Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K03378 Eucalyptus grandis HOM05D007833 ORTHO05D009855 2.7e-29 131.3 68 100.0
Potri.005G208100 Populus trichocarpa HOM05D007833 ORTHO05D009855 3.2e-14 81.3 56 75.0
Haze_04727 Corylus avellana HOM05D001305 ORTHO05D007147 1.2e-13 79.3 56 78.6
MBI04_g33966_MAGBIO Magnolia biondii HOM05D007833 ORTHO05D009855 3.6e-13 77.8 52 73.1
FAN20G1309 Fragaria x ananassa HOM05D007833 ORTHO05D009855 4.7e-13 77.4 46 82.6
MD11G1287600 Malus domestica HOM05D007833 ORTHO05D009855 8.0e-13 76.6 51 78.4
RcHm_v2.0_Chr6g0291241 Rosa chinensis HOM05D007833 ORTHO05D009855 1.4e-12 75.9 52 73.1
Cfa006126 Carpinus fangiana HOM05D007833 ORTHO05D009855 1.8e-12 75.5 68 67.6
FvH4_2g23750 Fragaria vesca HOM05D007833 ORTHO05D009855 1.8e-12 75.5 46 80.4
FAN24G2170 Fragaria x ananassa HOM05D007833 ORTHO05D009855 1.8e-12 75.5 46 80.4
CANSAT25G0416 Cannabis sativa HOM05D007833 ORTHO05D009855 3.0e-12 74.7 44 84.1
Atru.chr5.1399 Acer truncatum HOM05D007833 ORTHO05D009855 8.8e-12 73.2 47 78.7
Nitab4.5_0008797g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 8.8e-12 73.2 54 75.9
Prupe.8G242800 Prunus persica HOM05D007833 ORTHO05D009855 1.5e-11 72.4 51 74.5
Sed0020364 Sechium edule HOM05D007833 ORTHO05D009855 1.5e-11 72.4 50 74.0
CiPaw.07G092800 Carya illinoinensis HOM05D007833 ORTHO05D009855 2.0e-11 72.0 47 76.6
CsaV3_6G037060 Cucumis sativus L. HOM05D007833 ORTHO05D009855 2.0e-11 72.0 43 81.4
Manes.01G208800 Manihot esculenta HOM05D007833 ORTHO05D009855 2.6e-11 71.6 64 60.9
Nitab4.5_0000759g0080 Nicotiana tabacum HOM05D007833 ORTHO05D009855 2.6e-11 71.6 47 78.7
Thecc.01G281600 Theobroma cacao HOM05D007833 ORTHO05D009855 2.6e-11 71.6 83 55.4
TAR365G0564 Trochodendron aralioides HOM05D007833 ORTHO05D009855 3.4e-11 71.2 66 63.6
ClCG07G000180 Citrullus lanatus HOM05D007833 ORTHO05D009855 4.4e-11 70.9 69 60.9
Gorai.004G081500 Gossypium raimondii HOM05D007833 ORTHO05D009855 4.4e-11 70.9 78 56.4
QL12p022146 Quercus lobata HOM05D007833 ORTHO05D009855 4.4e-11 70.9 67 64.2
COL.COLO4_09117 Corchorus olitorius HOM05D003232 ORTHO05D003584 5.7e-11 70.5 77 57.1
Gohir.A08G068400 Gossypium hirsutum HOM05D007833 ORTHO05D009855 5.7e-11 70.5 49 73.5
Gohir.D08G076800 Gossypium hirsutum HOM05D007833 ORTHO05D009855 7.5e-11 70.1 78 56.4
Potri.002G054700 Populus trichocarpa HOM05D007833 ORTHO05D009855 1.3e-10 69.3 64 60.9
Duzib138G0003 Durio zibethinus HOM05D007833 ORTHO05D009855 1.7e-10 68.9 42 78.6
Solyc06g084300.1 Solanum lycopersicum HOM05D007833 ORTHO05D009855 1.7e-10 68.9 42 81.0
Duzib133G1414 Durio zibethinus HOM05D007833 ORTHO05D009855 2.2e-10 68.6 83 53.0
PGSC0003DMG400001195 Solanum tuberosum HOM05D007833 ORTHO05D009855 2.2e-10 68.6 55 65.5
Cc01_g19620 Coffea canephora HOM05D007833 ORTHO05D009855 3.7e-10 67.8 65 63.1
Phvul.001G149800 Phaseolus vulgaris HOM05D007833 ORTHO05D009855 3.7e-10 67.8 55 69.1
Sopen06g035690 Solanum pennellii HOM05D007833 ORTHO05D009855 3.7e-10 67.8 47 72.3
PGSC0003DMG400020049 Solanum tuberosum HOM05D007833 ORTHO05D009855 3.7e-10 67.8 56 67.9
arahy.Tifrunner.gnm1.ann1.1H9ESI Arachis hypogaea HOM05D007833 ORTHO05D009855 4.8e-10 67.4 59 67.8
AUR62036454 Chenopodium quinoa HOM05D007833 ORTHO05D009855 4.8e-10 67.4 53 69.8
MD03G1267100 Malus domestica HOM05D007833 ORTHO05D009855 4.8e-10 67.4 69 63.8
Nn1g02183 Nelumbo nucifera HOM05D007833 ORTHO05D009855 4.8e-10 67.4 42 78.6
BcaC06g33387 Brassica carinata HOM05D007833 ORTHO05D009855 6.3e-10 67.0 56 62.5
C07p46950 Brassica napus HOM05D000938 ORTHO05D001451 6.3e-10 67.0 56 62.5
BolC7t45211H Brassica oleracea HOM05D000938 ORTHO05D001451 6.3e-10 67.0 56 62.5
PGR044G2487 Punica granatum HOM05D007833 ORTHO05D009855 8.3e-10 66.6 42 81.0
Ca_08575_v3 Cicer arietinum L. HOM05D007833 ORTHO05D009855 1.1e-09 66.2 56 66.1
TWI59G0429 Tripterygium wilfordii HOM05D007833 ORTHO05D009855 1.1e-09 66.2 51 70.6
BcaC06g32911 Brassica carinata HOM05D007833 ORTHO05D009855 1.4e-09 65.9 70 54.3
CSS0012022 Camellia sinensis var. sinensis HOM05D007833 ORTHO05D009855 1.4e-09 65.9 57 66.7
ECA247G0823 Erigeron canadensis HOM05D007833 ORTHO05D009855 1.8e-09 65.5 75 56.0
A03p48860 Brassica napus HOM05D000938 ORTHO05D001451 2.4e-09 65.1 56 60.7
BraA03t13987Z Brassica rapa HOM05D000938 ORTHO05D001451 2.4e-09 65.1 56 60.7
AUR62017101 Chenopodium quinoa HOM05D007833 ORTHO05D009855 2.4e-09 65.1 47 68.1
Potri.017G127350 Populus trichocarpa HOM05D007833 ORTHO05D009855 2.4e-09 65.1 44 75.0
Ciclev10023167m.g Citrus clementina HOM05D007833 ORTHO05D009855 3.1e-09 64.7 42 76.2
Sp5g09880 Schrenkiella parvula HOM05D007833 ORTHO05D009855 3.1e-09 64.7 56 60.7
Hma1.2p1_0628F.1_g192040 Hydrangea macrophylla HOM05D007833 ORTHO05D009855 4.1e-09 64.3 62 59.7
Actinidia00743 Actinidia chinensis HOM05D002055 ORTHO05D002120 5.4e-09 63.9 60 61.7
CARHR162190 Cardamine hirsuta HOM05D007833 ORTHO05D009855 5.4e-09 63.9 49 63.3
Nitab4.5_0001028g0100 Nicotiana tabacum HOM05D007833 ORTHO05D009855 5.4e-09 63.9 55 61.8
CAN.G1682.20 Capsicum annuum HOM05D007833 ORTHO05D009855 7.0e-09 63.5 65 56.9
Glyma.19G154700 Glycine max HOM05D007833 ORTHO05D009855 7.0e-09 63.5 55 69.1
AL5G33070 Arabidopsis lyrata HOM05D007833 ORTHO05D009855 9.1e-09 63.2 56 64.3
AT3G52420 Arabidopsis thaliana HOM05D007833 ORTHO05D009855 9.1e-09 63.2 56 62.5
Ah.04g166580 Amaranthus hybridus HOM05D007833 ORTHO05D009855 1.2e-08 62.8 54 63.0
EL10Ac7g17570 Beta vulgaris HOM05D007833 ORTHO05D009855 1.6e-08 62.4 61 60.7
Carub.0005s1877 Capsella rubella HOM05D007833 ORTHO05D009855 1.6e-08 62.4 55 60.0
Lj1g0020293 Lotus japonicus HOM05D007833 ORTHO05D009855 1.6e-08 62.4 47 68.1
Psat3g064960 Pisum sativum HOM05D007833 ORTHO05D009855 1.6e-08 62.4 47 70.2
Lsat_1_v5_gn_9_4081 Lactuca sativa HOM05D007833 ORTHO05D009855 2.0e-08 62.0 55 63.6
Aqoxy6G00608 Aquilegia oxysepala HOM05D007833 ORTHO05D009855 3.5e-08 61.2 47 68.1
Oeu028084.1 Olea europaea HOM05D007833 ORTHO05D009855 4.5e-08 60.8 62 51.6
Nn4g26217 Nelumbo nucifera HOM05D007833 ORTHO05D009855 5.9e-08 60.5 42 69.0
Rhsim13G0023900 Rhododendron simsii HOM05D007833 ORTHO05D009855 5.9e-08 60.5 61 59.0
TPR.G26603 Trifolium pratense HOM05D007833 ORTHO05D009855 5.9e-08 60.5 47 68.1
Glyma.17G209300 Glycine max HOM05D007833 ORTHO05D009855 7.7e-08 60.1 55 65.5
Peaxi162Scf00783g00321 Petunia axillaris HOM05D007833 ORTHO05D009855 1.0e-07 59.7 48 66.7
Medtr7g094710 Medicago truncatula HOM05D007833 ORTHO05D009855 2.3e-07 58.5 66 56.1
Cpa.g.sc52.17 Carica papaya HOM05D007833 ORTHO05D009855 2.9e-07 58.2 42 69.0
Sc24g0003060 Simmondsia chinensis HOM05D007833 ORTHO05D009855 3.8e-07 57.8 55 58.2
Glyma.03G152200 Glycine max HOM05D007833 ORTHO05D009855 5.0e-07 57.4 63 57.1
Dinv11245 Davidia involucrata HOM05D003232 ORTHO05D003584 6.6e-07 57.0 66 54.5
Thhalv10010886m.g Eutrema salsugineum HOM05D007833 ORTHO05D009855 6.6e-07 57.0 45 64.4
Nitab4.5_0014943g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 1.5e-06 55.8 55 58.2
vmacro02562 Vaccinium macrocarpon HOM05D007833 ORTHO05D009855 3.3e-06 54.7 42 64.3
Migut.N02161 Erythranthe guttata HOM05D007833 ORTHO05D009855 7.2e-06 53.5 54 59.3
THA.LOC109116323 Tarenaya hassleriana HOM05D007833 ORTHO05D009855 7.2e-06 53.5 41 65.9


User provided reference genes

Program Settings