Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K02748 Eucalyptus grandis HOM05D004694 ORTHO05D006576 0.0e+00 1179.5 570 100.0
Thecc.03G124900 Theobroma cacao HOM05D004694 ORTHO05D006576 6.8e-307 1056.6 568 88.6
Rhsim12G0172800 Rhododendron simsii HOM05D004694 ORTHO05D006576 2.1e-300 1035.0 570 86.1
CiPaw.11G010700 Carya illinoinensis HOM05D004694 ORTHO05D006576 4.7e-300 1033.9 570 86.1
CSS0001791 Camellia sinensis var. sinensis HOM05D004694 ORTHO05D006576 3.1e-299 1031.2 570 86.0
Cfa018868 Carpinus fangiana HOM05D004694 ORTHO05D006576 3.1e-299 1031.2 570 86.0
MELO3C002350.2 Cucumis melo HOM05D004694 ORTHO05D006576 3.1e-299 1031.2 563 86.5
ClCG03G003600 Citrullus lanatus HOM05D004694 ORTHO05D006576 1.2e-298 1029.2 550 88.0
Duzib205G1411 Durio zibethinus HOM05D004694 ORTHO05D006576 1.5e-298 1028.9 568 86.4
CsaV3_1G009520 Cucumis sativus L. HOM05D004694 ORTHO05D006576 2.6e-298 1028.1 563 86.1
arahy.Tifrunner.gnm1.ann1.J1V7G3 Arachis hypogaea HOM05D004694 ORTHO05D006576 2.2e-297 1025.0 570 84.9
DCAR_016413 Daucus carota HOM05D004694 ORTHO05D006576 2.9e-297 1024.6 566 86.2
arahy.Tifrunner.gnm1.ann1.C9ULKZ Arachis hypogaea HOM05D004694 ORTHO05D006576 4.9e-297 1023.8 570 84.7
TAR622G1078 Trochodendron aralioides HOM05D004694 ORTHO05D006576 1.1e-296 1022.7 570 85.1
arahy.Tifrunner.gnm1.ann1.18QE6Y Arachis hypogaea HOM05D004694 ORTHO05D006576 1.9e-296 1021.9 570 84.7
vmacro16662 Vaccinium macrocarpon HOM05D004694 ORTHO05D006576 1.9e-296 1021.9 594 82.8
Ciclev10019499m.g Citrus clementina HOM05D004694 ORTHO05D006576 2.4e-296 1021.5 568 85.9
Nitab4.5_0001664g0050 Nicotiana tabacum HOM05D004694 ORTHO05D006576 3.2e-296 1021.1 556 86.7
Medtr8g028225 Medicago truncatula HOM05D004694 ORTHO05D006576 5.4e-296 1020.4 570 84.7
arahy.Tifrunner.gnm1.ann1.HVKI9W Arachis hypogaea HOM05D004694 ORTHO05D006576 9.2e-296 1019.6 570 84.6
Glyma.17G128000 Glycine max HOM05D004694 ORTHO05D006576 1.2e-295 1019.2 570 84.4
Gorai.001G060900 Gossypium raimondii HOM05D004694 ORTHO05D006576 1.6e-295 1018.8 569 85.4
TWI39G0550 Tripterygium wilfordii HOM05D004694 ORTHO05D006576 1.6e-295 1018.8 549 88.0
arahy.Tifrunner.gnm1.ann1.EW3HTN Arachis hypogaea HOM05D004694 ORTHO05D006576 2.1e-295 1018.5 570 84.6
Potri.015G092000 Populus trichocarpa HOM05D004694 ORTHO05D006576 2.7e-295 1018.1 565 85.8
THA.LOC104825008 Tarenaya hassleriana HOM05D004694 ORTHO05D006576 2.7e-295 1018.1 564 86.0
Gohir.A07G053000 Gossypium hirsutum HOM05D004694 ORTHO05D006576 4.6e-295 1017.3 569 85.2
Atru.chr9.1027_Atru.chr9.1028 Acer truncatum HOM05D004694 ORTHO05D006576 6.0e-295 1016.9 571 84.8
Dinv04852 Davidia involucrata HOM05D004694 ORTHO05D006576 6.0e-295 1016.9 572 85.1
CAN.G352.42 Capsicum annuum HOM05D004694 ORTHO05D006576 7.8e-295 1016.5 556 86.3
Gohir.D07G057400 Gossypium hirsutum HOM05D004694 ORTHO05D006576 1.0e-294 1016.1 569 85.4
FvH4_5g07710 Fragaria vesca HOM05D004694 ORTHO05D006576 1.7e-294 1015.4 571 84.4
Solyc03g111140.3 Solanum lycopersicum HOM05D004694 ORTHO05D006576 1.7e-294 1015.4 560 85.5
Lalb_Chr07g0183271 Lupinus albus HOM05D004694 ORTHO05D006576 2.3e-294 1015.0 570 83.5
TPR.G21293 Trifolium pratense HOM05D004694 ORTHO05D006576 3.0e-294 1014.6 570 83.7
Prupe.5G154600 Prunus persica HOM05D004694 ORTHO05D006576 5.1e-294 1013.8 573 84.5
Sopen03g030290 Solanum pennellii HOM05D004694 ORTHO05D006576 6.6e-294 1013.4 560 85.5
FAN18G1141 Fragaria x ananassa HOM05D004694 ORTHO05D006576 8.6e-294 1013.1 571 84.2
FAN04G1296 Fragaria x ananassa HOM05D004694 ORTHO05D006576 1.5e-293 1012.3 571 84.1
FAN08G1582 Fragaria x ananassa HOM05D004694 ORTHO05D006576 1.9e-293 1011.9 571 83.9
Nitab4.5_0003680g0030 Nicotiana tabacum HOM05D004694 ORTHO05D006576 3.3e-293 1011.1 556 86.0
Peaxi162Scf00089g00419 Petunia axillaris HOM05D004694 ORTHO05D006576 3.3e-293 1011.1 550 86.7
Lj4g0028142 Lotus japonicus HOM05D004694 ORTHO05D006576 5.6e-293 1010.4 571 84.8
Aqoxy3G01456 Aquilegia oxysepala HOM05D004694 ORTHO05D006576 7.3e-293 1010.0 570 84.2
Sed0009275 Sechium edule HOM05D004694 ORTHO05D006576 1.2e-292 1009.2 557 85.5
RcHm_v2.0_Chr7g0190721 Rosa chinensis HOM05D004694 ORTHO05D006576 1.6e-292 1008.8 573 83.6
Sopen03g030280 Solanum pennellii HOM05D004694 ORTHO05D006576 4.7e-292 1007.3 550 86.4
HanXRQChr05g0154041 Helianthus annuus HOM05D004694 ORTHO05D006576 8.1e-292 1006.5 550 87.1
Solyc03g111130.1 Solanum lycopersicum HOM05D004694 ORTHO05D006576 1.4e-291 1005.7 550 86.2
Lsat_1_v5_gn_5_13501 Lactuca sativa HOM05D004694 ORTHO05D006576 5.2e-291 1003.8 570 84.4
VMungo1215G0651 Vigna mungo HOM05D004694 ORTHO05D006576 5.2e-291 1003.8 551 86.0
PGR044G1202 Punica granatum HOM05D004694 ORTHO05D006576 1.2e-290 1002.7 572 84.6
PGSC0003DMG400015192 Solanum tuberosum HOM05D004694 ORTHO05D006576 1.2e-290 1002.7 560 84.8
AT5G03860 Arabidopsis thaliana HOM05D004694 ORTHO05D006576 1.5e-290 1002.3 549 86.2
AL6G13430 Arabidopsis lyrata HOM05D004694 ORTHO05D006576 3.4e-290 1001.1 549 85.8
ECA246G0215 Erigeron canadensis HOM05D004694 ORTHO05D006576 1.3e-289 999.2 570 83.0
MD06G1147700 Malus domestica HOM05D004694 ORTHO05D006576 1.7e-289 998.8 571 83.7
Hma1.2p1_0014F.1_g009775 Hydrangea macrophylla HOM05D004694 ORTHO05D006576 4.9e-289 997.3 569 83.7
Lj5C97G9 Lonicera japonica HOM05D004694 ORTHO05D006576 6.4e-289 996.9 596 80.9
Thhalv10015335m.g Eutrema salsugineum HOM05D004694 ORTHO05D006576 1.9e-288 995.3 549 85.2
BolC2t06123H Brassica oleracea HOM05D004694 ORTHO05D006576 7.1e-288 993.4 549 85.2
BraA02t04789Z Brassica rapa HOM05D004694 ORTHO05D006576 7.1e-288 993.4 549 85.4
Sp6g38870 Schrenkiella parvula HOM05D004694 ORTHO05D006576 1.6e-287 992.3 549 84.9
Carub.0006s0280 Capsella rubella HOM05D004694 ORTHO05D006576 3.0e-286 988.0 549 85.1
CANSAT11G0344 Cannabis sativa HOM05D004694 ORTHO05D006576 3.9e-286 987.6 566 82.3
C02p01580 Brassica napus HOM05D004694 ORTHO05D006576 5.1e-286 987.3 549 85.1
Sabra15G0113800 Salix brachista HOM05D004694 ORTHO05D006576 1.1e-285 986.1 547 85.4
CARHR209400 Cardamine hirsuta HOM05D004694 ORTHO05D006576 1.9e-285 985.3 549 84.5
arahy.Tifrunner.gnm1.ann1.U91AM5 Arachis hypogaea HOM05D004694 ORTHO05D006576 3.6e-284 981.1 573 81.7
PSO017G1181 Papaver somniferum HOM05D004694 ORTHO05D006576 4.7e-284 980.7 550 83.8
Migut.I00493 Erythranthe guttata HOM05D004694 ORTHO05D006576 6.2e-284 980.3 550 83.6
Aa31LG1G21410 Aethionema arabicum HOM05D004694 ORTHO05D006576 8.1e-284 979.9 549 84.3
Nn4g22401 Nelumbo nucifera HOM05D004694 ORTHO05D006576 1.1e-283 979.5 550 84.0
PSO478G2802 Papaver somniferum HOM05D004694 ORTHO05D006576 3.1e-283 978.0 550 83.5
PGSC0003DMG400015194 Solanum tuberosum HOM05D004694 ORTHO05D006576 5.8e-282 973.8 567 81.1
Sc14g0007560 Simmondsia chinensis HOM05D004694 ORTHO05D006576 1.3e-281 972.6 570 81.1
BcaB05g21798 Brassica carinata HOM05D004694 ORTHO05D006576 1.1e-280 969.5 557 82.9
Glyma.05G045900 Glycine max HOM05D004694 ORTHO05D006576 1.9e-280 968.8 543 83.4
Sopen03g030270 Solanum pennellii HOM05D004694 ORTHO05D006576 5.4e-280 967.2 567 80.6
VMungo1215G1303 Vigna mungo HOM05D004694 ORTHO05D006576 3.5e-279 964.5 545 83.7
EL10As4g23460 Beta vulgaris HOM05D004694 ORTHO05D006576 4.6e-279 964.1 570 79.5
SalBow5G3571 Salvia bowleyana HOM05D004694 ORTHO05D006576 3.9e-278 961.1 550 82.9
Glyma.17G128100 Glycine max HOM05D004694 ORTHO05D006576 5.6e-277 957.2 543 82.7
AUR62025866 Chenopodium quinoa HOM05D004694 ORTHO05D006576 7.3e-277 956.8 571 79.0
CAN.G352.43 Capsicum annuum HOM05D004694 ORTHO05D006576 9.6e-277 956.4 556 80.8
Phvul.003G209200 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 1.8e-275 952.2 567 80.1
AUR62029660 Chenopodium quinoa HOM05D004694 ORTHO05D006576 6.9e-275 950.3 571 78.5
Cpa.g.sc4.107 Carica papaya HOM05D004694 ORTHO05D006576 2.6e-274 948.3 570 79.6
Oeu044618.1 Olea europaea HOM05D004694 ORTHO05D006576 2.6e-274 948.3 520 86.5
unitig_21.g20324 Utricularia gibba HOM05D004694 ORTHO05D006576 2.2e-273 945.3 552 82.2
QL10p004544 Quercus lobata HOM05D004694 ORTHO05D006576 6.4e-273 943.7 518 87.1
SGA_v2.0_scaffold80G25701 Striga asiatica HOM05D004694 ORTHO05D006576 8.4e-273 943.3 555 81.8
CDE09G0730 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 1.7e-270 935.6 549 80.7
Haze_07250 Corylus avellana HOM05D004694 ORTHO05D006576 9.0e-267 923.3 570 79.1
FAN13G0009 Fragaria x ananassa HOM05D004694 ORTHO05D006576 7.6e-266 920.2 575 77.2
Actinidia08860 Actinidia chinensis HOM05D004694 ORTHO05D006576 8.4e-265 916.8 570 78.9
Ca_23552_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 5.4e-264 914.1 570 78.1
Cc04_g10080 Coffea canephora HOM05D004694 ORTHO05D006576 1.0e-257 893.3 570 76.5
ATR0824G173 Amborella trichopoda HOM05D004694 ORTHO05D006576 1.3e-257 892.9 544 77.0
Zm00001eb079170 Zea mays HOM05D004694 ORTHO05D006576 1.3e-257 892.9 546 77.8
HPP92_023361 Vanilla planifolia HOM05D004694 ORTHO05D006576 2.5e-256 888.6 549 76.9
Ah.11g044960 Amaranthus hybridus HOM05D004694 ORTHO05D006576 4.2e-256 887.9 545 75.4
MSTRG.9318 Avicennia marina HOM05D004694 ORTHO05D006576 8.7e-254 880.2 494 83.4
SalBow1G3673 Salvia bowleyana HOM05D004694 ORTHO05D006576 4.3e-253 877.9 540 77.2
SalBow1G5430 Salvia bowleyana HOM05D004694 ORTHO05D006576 5.7e-253 877.5 540 77.2
Os04g0486950 Oryza sativa ssp. japonica HOM05D004694 ORTHO05D006576 9.0e-251 870.2 562 75.6
MBI11_g05409_MAGBIO Magnolia biondii HOM05D004694 ORTHO05D006576 6.5e-249 864.0 558 77.6
GSVIVG01008494001 Vitis vinifera HOM05D004694 ORTHO05D006576 7.9e-247 857.1 559 75.7
Dinv11097 Davidia involucrata HOM05D004694 ORTHO05D006576 2.4e-243 845.5 455 89.5
COL.COLO4_28061 Corchorus olitorius HOM05D004694 ORTHO05D006576 6.9e-243 844.0 568 74.3
SEGI_27575 Sequoiadendron giganteum HOM05D004694 ORTHO05D006576 1.7e-241 839.3 548 72.6
CDE08G1017 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 7.7e-234 813.9 503 76.7
SMO367G0555 Selaginella moellendorffii HOM05D004694 ORTHO05D006576 8.5e-233 810.4 549 71.6
Pp3c20_22510 Physcomitrium patens HOM05D004694 ORTHO05D006576 3.9e-230 801.6 554 69.1
Manes.14G054100 Manihot esculenta HOM05D004694 ORTHO05D006576 7.4e-229 797.3 424 89.4
QL10p004639 Quercus lobata HOM05D004694 ORTHO05D006576 1.6e-226 789.6 423 88.9
Mapoly0154s0035 Marchantia polymorpha HOM05D004694 ORTHO05D006576 4.0e-222 775.0 536 68.5
AagrBONN_evm.TU.Sc2ySwM_117.2387 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.3e-217 760.0 532 69.2
CBR_g26132 Chara braunii HOM05D004694 ORTHO05D006576 3.6e-215 751.9 536 67.4
AagrBONN_evm.TU.Sc2ySwM_228.3843 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.6e-210 736.5 537 66.3
TAR374G0737 Trochodendron aralioides HOM05D004694 ORTHO05D002940 3.6e-207 725.3 612 63.2
SalBow1G1465 Salvia bowleyana HOM05D004694 ORTHO05D006576 6.1e-207 724.5 542 67.3
SalBow1G5822 Salvia bowleyana HOM05D004694 ORTHO05D006576 6.1e-207 724.5 542 67.3
Phvul.003G209101 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 7.8e-170 601.3 334 85.3
Actinidia36796 Actinidia chinensis HOM05D004694 ORTHO05D006576 1.1e-168 597.4 570 57.9
Psat4g158240 Pisum sativum HOM05D004694 ORTHO05D006576 2.5e-168 596.3 330 85.8
arahy.Tifrunner.gnm1.ann1.SX4PQT Arachis hypogaea HOM05D004694 ORTHO05D006576 1.2e-149 534.3 292 86.3
Cre03.g144807 Chlamydomonas reinhardtii HOM05D004694 ORTHO05D006576 1.3e-145 520.8 547 50.6
HPP92_023371 Vanilla planifolia HOM05D004694 ORTHO05D006576 1.3e-135 487.6 309 77.0
Ca_23555_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 1.1e-134 484.6 324 72.5
Hund10205 Selenicereus undatus HOM05D004694 ORTHO05D006576 1.3e-127 461.1 354 67.2
Potri.012G094532 Populus trichocarpa HOM05D004694 ORTHO05D006576 5.0e-100 369.4 199 87.4
SalBow1G0618 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.5e-91 341.3 504 43.5
BcaB01g05780 Brassica carinata HOM05D004694 ORTHO05D006576 2.6e-72 277.3 188 67.6
AagrBONN_evm.TU.Sc2ySwM_344.4962 Anthoceros agrestis HOM05D004694 ORTHO05D006576 7.8e-69 265.8 339 44.2
Duzib068G0556 Durio zibethinus HOM05D004694 ORTHO05D006576 7.1e-62 242.7 139 82.7
PGSC0003DMG402015193 Solanum tuberosum HOM05D004694 ORTHO05D016782 9.2e-62 242.3 133 87.2
arahy.Tifrunner.gnm1.ann1.0V01Q6 Arachis hypogaea HOM05D004694 ORTHO05D006576 6.6e-52 209.5 132 73.5
BcaC08g44622 Brassica carinata HOM05D004694 ORTHO05D016782 1.2e-50 205.3 129 74.4
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 2.8e-50 204.1 130 73.8
Ca_29801_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 1.1e-49 202.2 132 72.0
A03p11210 Brassica napus HOM05D004694 ORTHO05D016782 3.4e-48 197.2 127 72.4
C06p36560 Brassica napus HOM05D004694 ORTHO05D016782 3.4e-48 197.2 127 72.4
VMungo1383G1618 Vigna mungo HOM05D004694 ORTHO05D046692 1.3e-47 195.3 109 77.1
SalBow1G0228 Salvia bowleyana HOM05D004694 ORTHO05D006576 4.6e-45 186.8 119 74.8
C06p20980 Brassica napus HOM05D004694 ORTHO05D016782 1.7e-44 184.9 120 70.8
BolC6t37284H Brassica oleracea HOM05D004694 ORTHO05D016782 1.7e-44 184.9 120 70.8
A09p39550 Brassica napus HOM05D004694 ORTHO05D016782 1.9e-43 181.4 119 70.6
BraA01t01659Z Brassica rapa HOM05D004694 ORTHO05D016782 1.9e-43 181.4 119 70.6
Glyma.05G045851 Glycine max HOM05D004694 ORTHO05D046692 5.8e-40 169.9 95 78.9
PGSC0003DMG401015193 Solanum tuberosum HOM05D004694 ORTHO05D006576 5.6e-35 153.3 76 89.5
Ca_03499_v3 Cicer arietinum L. HOM05D004694 ORTHO05D016782 1.6e-29 135.2 79 81.0
SalBow1G3079 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.5e-24 118.6 86 67.4
MD14G1161700 Malus domestica HOM05D004694 ORTHO05D248771 2.6e-24 117.9 189 42.3
Ca_28596_v3 Cicer arietinum L. HOM05D004694 ORTHO05D148954 5.8e-24 116.7 118 47.5
AUR62040389 Chenopodium quinoa HOM05D003382 ORTHO05D003930 1.1e-22 112.5 121 47.1
Glyma.19G088650 Glycine max HOM05D004694 ORTHO05D213888 1.2e-21 109.0 60 80.0
MD14G1161800 Malus domestica HOM05D004694 ORTHO05D016782 1.7e-15 88.6 63 66.7


User provided reference genes

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