Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K02653 Eucalyptus grandis HOM05D004216 ORTHO05D004926 0.0e+00 2551.5 1328 100.0
PGR044G2306 Punica granatum HOM05D004216 ORTHO05D004926 0.0e+00 1886.7 1353 73.7
CiPaw.15G126300 Carya illinoinensis HOM05D004216 ORTHO05D004926 0.0e+00 1739.9 1375 68.1
Ciclev10018514m.g Citrus clementina HOM05D004216 ORTHO05D004926 0.0e+00 1728.4 1381 66.5
Cfa019828 Carpinus fangiana HOM05D004216 ORTHO05D004926 0.0e+00 1726.5 1360 68.3
Potri.015G050800 Populus trichocarpa HOM05D004216 ORTHO05D004926 0.0e+00 1723.8 1401 64.8
Dinv38590 Davidia involucrata HOM05D004216 ORTHO05D004926 0.0e+00 1723.4 1263 70.5
Manes.05G119100 Manihot esculenta HOM05D004216 ORTHO05D004926 0.0e+00 1723.4 1389 65.3
Hma1.2p1_0595F.1_g186000 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 0.0e+00 1722.6 1364 68.6
Thecc.03G027900 Theobroma cacao HOM05D004216 ORTHO05D004926 0.0e+00 1719.5 1356 66.8
TWI81G0292 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 0.0e+00 1706.0 1388 64.8
QL10p022943 Quercus lobata HOM05D004216 ORTHO05D004926 0.0e+00 1705.3 1414 64.6
Lalb_Chr12g0197541 Lupinus albus HOM05D004216 ORTHO05D004926 0.0e+00 1694.9 1396 64.9
CSS0006085 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 0.0e+00 1693.3 1453 62.6
CSS0012337 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 0.0e+00 1693.3 1453 62.6
VMungo1215G1362 Vigna mungo HOM05D004216 ORTHO05D004926 0.0e+00 1686.8 1395 64.9
Lj4g0001448 Lotus japonicus HOM05D004216 ORTHO05D004926 0.0e+00 1682.5 1397 65.4
RcHm_v2.0_Chr7g0184581 Rosa chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1681.0 1490 62.6
Glyma.17G121600 Glycine max HOM05D004216 ORTHO05D004926 0.0e+00 1678.3 1396 64.3
FAN18G1390 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1670.6 1488 62.9
FvH4_5g12730 Fragaria vesca HOM05D004216 ORTHO05D004926 0.0e+00 1669.1 1488 62.8
Atru.chr9.749 Acer truncatum HOM05D004216 ORTHO05D004926 0.0e+00 1666.4 1462 63.5
Gorai.001G045800 Gossypium raimondii HOM05D004216 ORTHO05D004926 0.0e+00 1662.1 1359 65.8
Ca_02536_v3 Cicer arietinum L. HOM05D004216 ORTHO05D004926 0.0e+00 1659.0 1388 63.8
FAN13G0239 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1654.0 1488 62.2
FAN08G0408 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1650.6 1488 62.0
Phvul.003G177400 Phaseolus vulgaris HOM05D004216 ORTHO05D004926 0.0e+00 1647.9 1396 64.5
MELO3C002074.2 Cucumis melo HOM05D004216 ORTHO05D004926 0.0e+00 1640.2 1378 64.5
Nn4g23713 Nelumbo nucifera HOM05D004216 ORTHO05D004926 0.0e+00 1637.5 1357 64.9
arahy.Tifrunner.gnm1.ann1.868KN4 Arachis hypogaea HOM05D004216 ORTHO05D004926 0.0e+00 1635.5 1441 62.2
arahy.Tifrunner.gnm1.ann1.CB5LZE Arachis hypogaea HOM05D004216 ORTHO05D004926 0.0e+00 1633.2 1440 62.0
CsaV3_1G006480 Cucumis sativus L. HOM05D004216 ORTHO05D004926 0.0e+00 1632.1 1380 64.4
Glyma.05G013400 Glycine max HOM05D004216 ORTHO05D004926 0.0e+00 1627.5 1399 62.4
FAN18G2177 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1625.5 1488 61.8
Sed0006394 Sechium edule HOM05D004216 ORTHO05D004926 0.0e+00 1622.4 1392 63.8
CANSAT80G0956 Cannabis sativa HOM05D004216 ORTHO05D004926 0.0e+00 1618.6 1549 59.1
Cc04_g07550 Coffea canephora HOM05D004216 ORTHO05D004926 0.0e+00 1612.0 1284 65.3
ClCG04G011280 Citrullus lanatus HOM05D004216 ORTHO05D004926 0.0e+00 1609.0 1377 63.8
TPR.G26791 Trifolium pratense HOM05D004216 ORTHO05D004926 0.0e+00 1601.3 1355 63.5
Aqoxy3G03901 Aquilegia oxysepala HOM05D004216 ORTHO05D004926 0.0e+00 1576.6 1382 61.4
HanXRQChr05g0153841 Helianthus annuus HOM05D004216 ORTHO05D004926 0.0e+00 1572.4 1234 65.6
Nitab4.5_0001599g0210 Nicotiana tabacum HOM05D004216 ORTHO05D004926 0.0e+00 1564.3 1348 61.1
Lsat_1_v5_gn_5_25060 Lactuca sativa HOM05D004216 ORTHO05D004926 0.0e+00 1562.0 1287 64.0
FAN04G0815 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1554.3 1240 65.6
Nitab4.5_0000410g0130 Nicotiana tabacum HOM05D004216 ORTHO05D004926 0.0e+00 1553.5 1348 60.9
Actinidia31032 Actinidia chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1548.9 1373 61.4
Oeu004769.3 Olea europaea HOM05D004216 ORTHO05D004926 0.0e+00 1539.2 1315 61.8
Hund02527 Selenicereus undatus HOM05D004216 ORTHO05D004926 0.0e+00 1535.4 1248 63.7
Duzib205G0916 Durio zibethinus HOM05D004216 ORTHO05D004926 0.0e+00 1530.4 1359 62.8
CAN.G438.113 Capsicum annuum HOM05D004216 ORTHO05D004926 0.0e+00 1528.1 1346 60.0
Sc10g0009590 Simmondsia chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1526.5 1179 65.7
PSO478G4514 Papaver somniferum HOM05D004216 ORTHO05D004926 0.0e+00 1521.9 1237 64.4
Migut.J01004 Erythranthe guttata HOM05D004216 ORTHO05D004926 0.0e+00 1515.0 1332 60.1
PSO017G0533 Papaver somniferum HOM05D004216 ORTHO05D004926 0.0e+00 1513.0 1237 64.3
Sopen03g038630 Solanum pennellii HOM05D004216 ORTHO05D004926 0.0e+00 1508.0 1340 60.1
GSVIVG01008230001 Vitis vinifera HOM05D004216 ORTHO05D004926 0.0e+00 1499.2 1223 63.7
AUR62032188 Chenopodium quinoa HOM05D004216 ORTHO05D004926 0.0e+00 1496.5 1404 57.6
AUR62036947 Chenopodium quinoa HOM05D004216 ORTHO05D004926 0.0e+00 1484.9 1417 56.7
SalBow3G4568 Salvia bowleyana HOM05D004216 ORTHO05D004926 0.0e+00 1483.4 1336 58.2
ATR0564G329 Amborella trichopoda HOM05D004216 ORTHO05D004926 0.0e+00 1480.3 1192 64.4
Carub.0002s2073 Capsella rubella HOM05D004216 ORTHO05D004926 0.0e+00 1471.4 1431 56.8
THA.LOC104812129 Tarenaya hassleriana HOM05D004216 ORTHO05D004926 0.0e+00 1466.4 1412 58.9
AL2G33790 Arabidopsis lyrata HOM05D004216 ORTHO05D004926 0.0e+00 1465.3 1434 57.2
Solyc03g119780.4 Solanum lycopersicum HOM05D004216 ORTHO05D004926 0.0e+00 1463.4 1045 69.7
AT1G73960 Arabidopsis thaliana HOM05D004216 ORTHO05D004926 0.0e+00 1460.3 1426 57.7
MSTRG.5865 Avicennia marina HOM05D004216 ORTHO05D004926 0.0e+00 1460.3 1292 60.0
EL10Ac5g11246 Beta vulgaris HOM05D004216 ORTHO05D004926 0.0e+00 1456.8 1294 59.4
CARHR067070 Cardamine hirsuta HOM05D004216 ORTHO05D004926 0.0e+00 1455.3 1431 56.2
Thhalv10018013m.g Eutrema salsugineum HOM05D004216 ORTHO05D004926 0.0e+00 1450.3 1288 59.1
Gohir.A07G038666 Gossypium hirsutum HOM05D004216 ORTHO05D004926 0.0e+00 1449.1 1340 61.0
Aa31LG4G4250 Aethionema arabicum HOM05D004216 ORTHO05D004926 0.0e+00 1429.8 1432 56.1
Sp5g29160 Schrenkiella parvula HOM05D004216 ORTHO05D004926 0.0e+00 1429.8 1432 55.6
BolC6t39842H Brassica oleracea HOM05D004216 ORTHO05D004926 0.0e+00 1428.7 1285 59.1
C06p48070 Brassica napus HOM05D004216 ORTHO05D004926 0.0e+00 1426.8 1286 59.0
A07p39800 Brassica napus HOM05D004216 ORTHO05D004926 0.0e+00 1422.1 1285 58.8
BraA07t31527Z Brassica rapa HOM05D004216 ORTHO05D004926 0.0e+00 1413.3 1446 54.4
Prupe.5G217000 Prunus persica HOM05D004216 ORTHO05D004926 0.0e+00 1411.0 1278 62.7
Psat4g043600 Pisum sativum HOM05D004216 ORTHO05D004926 0.0e+00 1394.8 1221 62.2
ECA246G5151 Erigeron canadensis HOM05D004216 ORTHO05D004926 0.0e+00 1393.3 1196 61.6
SGA_v2.0_scaffold13G06699 Striga asiatica HOM05D004216 ORTHO05D004926 0.0e+00 1384.8 1294 58.2
HPP92_023478 Vanilla planifolia HOM05D004216 ORTHO05D004926 0.0e+00 1379.0 1176 59.9
Ah.11g047140 Amaranthus hybridus HOM05D004216 ORTHO05D004926 0.0e+00 1362.4 1198 59.8
Peaxi162Scf00015g00072 Petunia axillaris HOM05D004216 ORTHO05D004926 0.0e+00 1353.6 1543 50.7
CDE05G2534 Ceratophyllum demersum HOM05D004216 ORTHO05D004926 0.0e+00 1350.9 1176 59.5
DCAR_001432 Daucus carota HOM05D004216 ORTHO05D004926 0.0e+00 1350.5 1282 56.3
MD06G1211000 Malus domestica HOM05D004216 ORTHO05D004926 0.0e+00 1303.5 1248 60.0
Zm00001eb312360 Zea mays HOM05D004216 ORTHO05D004926 0.0e+00 1277.3 1228 54.6
TAR371G0728 Trochodendron aralioides HOM05D004216 ORTHO05D004926 0.0e+00 1261.5 1056 65.6
Rhsim08G0138000 Rhododendron simsii HOM05D004216 ORTHO05D004926 0.0e+00 1214.1 857 70.7
Hma1.2p1_0595F.1_g186010 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 0.0e+00 1184.9 766 76.9
unitig_578.g15823 Utricularia gibba HOM05D004216 ORTHO05D004926 0.0e+00 1176.0 1292 50.8
SEGI_21625 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 0.0e+00 1162.9 1062 58.9
Gohir.A07G038732 Gossypium hirsutum HOM05D004216 ORTHO05D004926 0.0e+00 1139.8 765 72.7
Sabra15G0075800 Salix brachista HOM05D004216 ORTHO05D004926 0.0e+00 1139.0 858 67.2
Mapoly0014s0115 Marchantia polymorpha HOM05D004216 ORTHO05D004926 0.0e+00 1078.5 1028 54.5
Pp3c18_6100 Physcomitrium patens HOM05D004216 ORTHO05D004926 2.1e-295 1019.6 1167 48.4
Pp3c21_15920 Physcomitrium patens HOM05D004216 ORTHO05D004926 9.7e-288 994.2 1153 47.3
Lj9A432G69 Lonicera japonica HOM05D004216 ORTHO05D004926 1.7e-276 956.8 837 61.6
SMO367G1244 Selaginella moellendorffii HOM05D004216 ORTHO05D004926 1.7e-260 903.7 997 50.7
COL.COLO4_22716 Corchorus olitorius HOM05D004216 ORTHO05D004926 2.2e-239 833.6 939 55.3
vmacro17679 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 8.6e-228 795.0 481 79.8
AagrBONN_evm.TU.Sc2ySwM_117.3880 Anthoceros agrestis HOM05D004216 ORTHO05D004926 2.3e-220 770.4 810 50.9
Gohir.D07G042740 Gossypium hirsutum HOM05D004216 ORTHO05D004926 3.7e-215 753.1 733 61.3
Haze_18610 Corylus avellana HOM05D004216 ORTHO05D004926 6.4e-199 699.1 719 60.6
Haze_18611 Corylus avellana HOM05D004216 ORTHO05D004926 1.4e-198 698.0 719 60.1
COL.COLO4_22715 Corchorus olitorius HOM05D004216 ORTHO05D004926 1.6e-189 667.9 484 69.4
HPP92_023454 Vanilla planifolia HOM05D004216 ORTHO05D004926 5.1e-188 662.9 807 46.1
SEGI_35421 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 4.8e-154 550.1 498 55.4
Lj9P432G41 Lonicera japonica HOM05D004216 ORTHO05D004926 3.2e-150 537.3 369 72.1
Cpa.g.sc1020.1 Carica papaya HOM05D004216 ORTHO05D004926 5.3e-145 520.0 310 78.7
Cpa.g.sc13.49 Carica papaya HOM05D004216 ORTHO05D004926 1.3e-122 445.7 494 53.0
Os09g0410125 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 9.8e-115 419.5 324 64.2
TAR371G0173 Trochodendron aralioides HOM05D004216 ORTHO05D004926 4.6e-104 384.0 290 65.5
Gohir.D07G042820 Gossypium hirsutum HOM05D004216 ORTHO05D004926 2.6e-99 368.2 235 74.9
vmacro17678 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 3.1e-92 344.7 641 43.8
MD06G1210800 Malus domestica HOM05D004216 ORTHO05D004926 4.2e-89 334.3 226 73.0
Rhsim08G0137900 Rhododendron simsii HOM05D004216 ORTHO05D004926 7.1e-89 333.6 512 44.3
Medtr1014s0010 Medicago truncatula HOM05D004216 ORTHO05D004926 2.7e-88 331.6 206 77.7
Haze_18609 Corylus avellana HOM05D004216 ORTHO05D004926 3.6e-77 294.7 208 71.2
Cfa022283 Carpinus fangiana HOM05D004216 ORTHO05D004926 6.9e-68 263.8 1043 25.2
Gohir.D07G042780 Gossypium hirsutum HOM05D004216 ORTHO05D004926 1.0e-63 250.0 172 70.9
Cre13.g583500 Chlamydomonas reinhardtii HOM05D004216 ORTHO05D004926 1.5e-62 246.1 657 28.8
PRCOL_00003918 Prasinoderma coloniale HOM05D004216 ORTHO05D004926 4.6e-56 224.6 895 25.1
Medtr7g029065 Medicago truncatula HOM05D004216 ORTHO05D004926 6.1e-56 224.2 411 45.3
Cpa.g.sc1020.2 Carica papaya HOM05D004216 ORTHO05D004926 5.1e-55 221.1 152 72.4
Gohir.D07G042860 Gossypium hirsutum HOM05D004216 ORTHO05D004926 2.5e-54 218.8 172 65.7
Cpa.g.sc13.56 Carica papaya HOM05D004216 ORTHO05D004926 2.6e-51 208.8 143 69.2
arahy.Tifrunner.gnm1.ann1.1HJL67 Arachis hypogaea HOM05D004216 ORTHO05D004926 2.1e-48 199.1 138 70.3
Medtr1091s0010 Medicago truncatula HOM05D004216 ORTHO05D004926 1.1e-46 193.4 115 80.0
SHI18928 Sapria himalayana HOM05D004216 ORTHO05D004926 2.0e-43 182.6 139 64.7
Cpa.g.sc13.54 Carica papaya HOM05D004216 ORTHO05D004926 5.0e-42 177.9 104 81.7
Actinidia39807 Actinidia chinensis HOM05D004216 ORTHO05D004926 1.1e-41 176.8 232 45.7
Haze_18607 Corylus avellana HOM05D004216 ORTHO05D004926 6.7e-39 167.5 126 65.9
Duzib084G0462 Durio zibethinus HOM05D004216 ORTHO05D004926 2.6e-38 165.6 154 55.2
TAR629G2837 Trochodendron aralioides HOM05D004216 ORTHO05D004926 1.8e-31 142.9 157 52.2
SHI18930 Sapria himalayana HOM05D004216 ORTHO05D004926 2.3e-31 142.5 111 60.4
PGSC0003DMG400005622 Solanum tuberosum HOM05D004216 ORTHO05D004926 4.0e-31 141.7 405 31.4
arahy.Tifrunner.gnm1.ann1.269HHI Arachis hypogaea HOM05D004216 ORTHO05D004926 2.6e-30 139.0 122 64.8
arahy.Tifrunner.gnm1.ann1.CPL525 Arachis hypogaea HOM05D004216 ORTHO05D004926 1.7e-29 136.3 327 32.7
Medtr0268s0020 Medicago truncatula HOM05D004216 ORTHO05D004926 1.7e-29 136.3 76 77.6
Zm00001eb099360 Zea mays HOM05D004216 ORTHO05D004926 3.1e-28 132.1 102 61.8
MCO16G579 Micromonas commoda HOM05D004216 ORTHO05D004926 2.0e-27 129.4 705 23.7
arahy.Tifrunner.gnm1.ann1.1842CP Arachis hypogaea HOM05D004216 ORTHO05D004926 1.9e-25 122.9 156 48.1
SHI18919 Sapria himalayana HOM05D004216 ORTHO05D004926 4.2e-25 121.7 234 41.5
Lj9A432T73 Lonicera japonica HOM05D004216 ORTHO05D004926 5.5e-25 121.3 89 66.3
SalBow8G1216 Salvia bowleyana HOM05D004216 ORTHO05D004926 3.0e-23 115.5 80 68.8
SHI18921 Sapria himalayana HOM05D004216 ORTHO05D004926 4.0e-23 115.2 110 56.4
arahy.Tifrunner.gnm1.ann1.FN32SY Arachis hypogaea HOM05D004216 ORTHO05D004926 8.8e-23 114.0 75 77.3
Lsat_1_v5_gn_3_22081 Lactuca sativa HOM05D001700 ORTHO05D013746 8.8e-23 114.0 78 73.1
Lj6g0001849 Lotus japonicus HOM05D004216 ORTHO05D004926 2.0e-22 112.8 81 63.0
Os09g0409950 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 7.5e-22 110.9 149 42.3
Lsat_1_v5_gn_4_30120 Lactuca sativa HOM05D004216 ORTHO05D004926 2.5e-17 95.9 88 54.5
SHI18924 Sapria himalayana HOM05D004216 ORTHO05D004926 3.6e-16 92.0 61 68.9
MD14G1221600 Malus domestica HOM05D004216 ORTHO05D004926 2.3e-15 89.4 61 65.6
Medtr4g113360 Medicago truncatula HOM05D004216 ORTHO05D004926 3.0e-15 89.0 126 42.1
Medtr4g113495 Medicago truncatula HOM05D004216 ORTHO05D004926 2.0e-14 86.3 94 48.9
Lsat_1_v5_gn_4_156821 Lactuca sativa HOM05D001700 ORTHO05D013746 2.8e-13 82.4 53 75.5
MD14G1221500 Malus domestica HOM05D004216 ORTHO05D004926 2.8e-13 82.4 70 60.0
SHI18929 Sapria himalayana HOM05D004216 ORTHO05D004926 6.3e-13 81.3 54 57.4
DCAR_023664 Daucus carota HOM05D000415 ORTHO05D006649 2.4e-12 79.3 64 57.8
arahy.Tifrunner.gnm1.ann1.9R3CPH Arachis hypogaea HOM05D004216 ORTHO05D004926 3.5e-11 75.5 73 52.1
SHI18925 Sapria himalayana HOM05D000023 ORTHO05D000014 3.5e-11 75.5 85 52.9
TWI60G0758 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 8.6e-10 70.9 87 47.1
SHI18927 Sapria himalayana HOM05D004216 ORTHO05D004926 1.4e-07 63.5 64 51.6
Zm00001eb099350 Zea mays HOM05D004216 ORTHO05D004926 1.8e-07 63.2 47 61.7


User provided reference genes

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