Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K02503 Eucalyptus grandis HOM05D006238 ORTHO05D007458 1.8e-60 236.9 262 100.0
CSS0008812 Camellia sinensis var. sinensis HOM05D006238 ORTHO05D007458 1.6e-45 187.2 262 87.8
Oeu038367.1 Olea europaea HOM05D006238 ORTHO05D007458 2.8e-45 186.4 262 88.2
PGR044G1626 Punica granatum HOM05D006238 ORTHO05D007458 3.6e-45 186.0 262 89.3
GSVIVG01007912001 Vitis vinifera HOM05D006238 ORTHO05D007458 3.6e-45 186.0 260 88.8
Cfa019307 Carpinus fangiana HOM05D006238 ORTHO05D007458 8.0e-45 184.9 262 88.2
Haze_07689 Corylus avellana HOM05D006238 ORTHO05D007458 8.0e-45 184.9 262 88.2
Potri.015G048800 Populus trichocarpa HOM05D006238 ORTHO05D007458 8.0e-45 184.9 262 85.5
Lj1g0017158 Lotus japonicus HOM05D006238 ORTHO05D007458 1.0e-44 184.5 262 83.2
Duzib205G0643 Durio zibethinus HOM05D006238 ORTHO05D007458 1.4e-44 184.1 262 87.0
Gohir.A09G243100 Gossypium hirsutum HOM05D006238 ORTHO05D007458 2.3e-44 183.3 262 87.8
Gohir.D09G243800 Gossypium hirsutum HOM05D006238 ORTHO05D007458 2.3e-44 183.3 262 87.8
Gorai.006G267600 Gossypium raimondii HOM05D006238 ORTHO05D007458 2.3e-44 183.3 262 87.8
Sed0022301 Sechium edule HOM05D006238 ORTHO05D007458 3.1e-44 183.0 262 88.9
arahy.Tifrunner.gnm1.ann1.G7J9WL Arachis hypogaea HOM05D006238 ORTHO05D007458 4.0e-44 182.6 260 86.9
arahy.Tifrunner.gnm1.ann1.XMW6VU Arachis hypogaea HOM05D006238 ORTHO05D007458 4.0e-44 182.6 260 81.2
Thecc.03G097700 Theobroma cacao HOM05D006238 ORTHO05D007458 4.0e-44 182.6 262 87.8
Actinidia35026 Actinidia chinensis HOM05D006238 ORTHO05D007458 8.9e-44 181.4 262 87.4
Migut.L00004 Erythranthe guttata HOM05D006238 ORTHO05D007458 8.9e-44 181.4 262 87.0
CANSAT80G2720 Cannabis sativa HOM05D006238 ORTHO05D007458 1.2e-43 181.0 262 88.5
Migut.I00441 Erythranthe guttata HOM05D006238 ORTHO05D007458 1.2e-43 181.0 262 86.6
CiPaw.11G050500 Carya illinoinensis HOM05D006238 ORTHO05D007458 1.5e-43 180.6 262 86.3
Medtr3g023830 Medicago truncatula HOM05D006238 ORTHO05D007458 4.4e-43 179.1 262 79.4
Glyma.06G201600 Glycine max HOM05D006238 ORTHO05D007458 9.8e-43 177.9 262 81.7
TPR.G12219 Trifolium pratense HOM05D006238 ORTHO05D007458 9.8e-43 177.9 262 79.8
TWI81G0503 Tripterygium wilfordii HOM05D006238 ORTHO05D007458 9.8e-43 177.9 262 85.1
MELO3C017212.2 Cucumis melo HOM05D006238 ORTHO05D007458 1.3e-42 177.6 262 87.8
CsaV3_1G002770 Cucumis sativus L. HOM05D006238 ORTHO05D007458 1.3e-42 177.6 262 87.8
QL10p018767 Quercus lobata HOM05D006238 ORTHO05D007458 1.3e-42 177.6 261 87.4
QL93p0191_0017 Quercus lobata HOM05D006238 ORTHO05D007458 1.3e-42 177.6 261 87.4
Glyma.04G164100 Glycine max HOM05D006238 ORTHO05D007458 1.7e-42 177.2 262 80.5
MSTRG.22972 Avicennia marina HOM05D006238 ORTHO05D007458 2.9e-42 176.4 262 87.0
ClCG06G015770 Citrullus lanatus HOM05D006238 ORTHO05D007458 6.4e-42 175.3 262 87.4
Ca_13804_v3 Cicer arietinum L. HOM05D006238 ORTHO05D007458 1.9e-41 173.7 262 80.5
Lalb_Chr08g0238951 Lupinus albus HOM05D006238 ORTHO05D007458 1.9e-41 173.7 262 81.3
Atru.chr9.382 Acer truncatum HOM05D006238 ORTHO05D007458 2.4e-41 173.3 263 86.7
Psat5g211960 Pisum sativum HOM05D006238 ORTHO05D007458 3.2e-41 172.9 262 85.9
COL.COLO4_22216 Corchorus olitorius HOM05D006238 ORTHO05D007458 4.1e-41 172.6 262 86.3
Aqoxy3G00445 Aquilegia oxysepala HOM05D006238 ORTHO05D007458 7.0e-41 171.8 262 85.5
Prupe.5G201600 Prunus persica HOM05D006238 ORTHO05D007458 7.0e-41 171.8 260 86.5
RcHm_v2.0_Chr7g0182671 Rosa chinensis HOM05D006238 ORTHO05D007458 7.0e-41 171.8 260 86.5
Ciclev10021749m.g Citrus clementina HOM05D006238 ORTHO05D007458 9.2e-41 171.4 260 85.4
FvH4_5g14250 Fragaria vesca HOM05D006238 ORTHO05D007458 1.2e-40 171.0 260 86.5
MD14G1209200 Malus domestica HOM05D006238 ORTHO05D007458 1.6e-40 170.6 262 85.9
Lsat_1_v5_gn_4_110280 Lactuca sativa HOM05D006238 ORTHO05D007458 2.0e-40 170.2 262 86.3
Solyc12g040320.2 Solanum lycopersicum HOM05D006238 ORTHO05D007458 7.8e-40 168.3 262 85.1
Hund02602 Selenicereus undatus HOM05D006238 ORTHO05D007458 1.3e-39 167.5 261 83.5
Sopen12g019730 Solanum pennellii HOM05D006238 ORTHO05D007458 3.0e-39 166.4 262 80.9
Gohir.D12G183800 Gossypium hirsutum HOM05D006238 ORTHO05D007458 3.9e-39 166.0 262 85.1
ECA232G0231 Erigeron canadensis HOM05D000954 ORTHO05D000822 8.6e-39 164.9 263 86.3
Gohir.A12G181100 Gossypium hirsutum HOM05D006238 ORTHO05D007458 8.6e-39 164.9 262 84.7
Nn4g23380 Nelumbo nucifera HOM05D006238 ORTHO05D007458 8.6e-39 164.9 262 40.8
EL10Ac5g11104 Beta vulgaris HOM05D006238 ORTHO05D007458 1.1e-38 164.5 261 83.9
HanXRQChr14g0439161 Helianthus annuus HOM05D006238 ORTHO05D007458 7.3e-38 161.8 262 84.7
THA.LOC104801299 Tarenaya hassleriana HOM05D006238 ORTHO05D007458 7.3e-38 161.8 261 84.7
ATR0064G078 Amborella trichopoda HOM05D006238 ORTHO05D007458 2.8e-37 159.8 261 82.8
PSO478G4259 Papaver somniferum HOM05D006238 ORTHO05D007458 3.6e-37 159.5 260 83.5
HanXRQChr02g0042551 Helianthus annuus HOM05D006238 ORTHO05D007458 8.0e-37 158.3 262 83.2
Sopen03g034410 Solanum pennellii HOM05D006238 ORTHO05D007458 8.0e-37 158.3 262 84.0
BcaB05g21597 Brassica carinata HOM05D006238 ORTHO05D007458 1.1e-36 157.9 261 83.5
Sp6g35050 Schrenkiella parvula HOM05D006238 ORTHO05D007458 1.1e-36 157.9 261 83.9
BcaNung04721 Brassica carinata HOM05D006238 ORTHO05D007458 1.8e-36 157.1 262 82.4
C02p03310 Brassica napus HOM05D006238 ORTHO05D007458 1.8e-36 157.1 262 82.4
BolC2t06295H Brassica oleracea HOM05D006238 ORTHO05D007458 1.8e-36 157.1 262 82.4
PSO017G1619 Papaver somniferum HOM05D006238 ORTHO05D007458 1.8e-36 157.1 260 83.5
Thhalv10014418m.g Eutrema salsugineum HOM05D006238 ORTHO05D007458 3.1e-36 156.4 261 83.9
C03p03970 Brassica napus HOM05D006238 ORTHO05D007458 5.2e-36 155.6 261 83.9
BraA02t04934Z Brassica rapa HOM05D006238 ORTHO05D007458 5.2e-36 155.6 262 82.1
Solyc03g115410.3 Solanum lycopersicum HOM05D006238 ORTHO05D007458 5.2e-36 155.6 262 83.6
BcaB01g05644 Brassica carinata HOM05D006238 ORTHO05D007458 1.5e-35 154.1 261 83.5
BolC3t12934H Brassica oleracea HOM05D006238 ORTHO05D007458 1.5e-35 154.1 261 83.5
A03p03520 Brassica napus HOM05D006238 ORTHO05D007458 3.4e-35 152.9 261 83.1
BraA03t09702Z Brassica rapa HOM05D006238 ORTHO05D007458 3.4e-35 152.9 261 83.1
BcaB01g05688 Brassica carinata HOM05D006238 ORTHO05D007458 4.4e-35 152.5 261 83.1
BcaNung04724 Brassica carinata HOM05D006238 ORTHO05D007458 4.4e-35 152.5 261 83.5
CAN.G479.27 Capsicum annuum HOM05D006238 ORTHO05D007458 4.4e-35 152.5 262 82.8
BcaB01g05687 Brassica carinata HOM05D006238 ORTHO05D007458 5.8e-35 152.1 261 83.1
Aa31LG3G18600 Aethionema arabicum HOM05D006238 ORTHO05D007458 1.7e-34 150.6 284 58.5
Carub.0006s0680 Capsella rubella HOM05D006238 ORTHO05D007458 3.7e-34 149.4 261 82.0
AL6G18240 Arabidopsis lyrata HOM05D006238 ORTHO05D007458 4.9e-34 149.1 261 82.0
ECA247G0665 Erigeron canadensis HOM05D000006 ORTHO05D007458 6.4e-34 148.7 253 82.6
SGA_v2.0_scaffold28G11764 Striga asiatica HOM05D006238 ORTHO05D007458 1.4e-33 147.5 262 75.6
AT5G07910 Arabidopsis thaliana HOM05D006238 ORTHO05D007458 1.9e-33 147.1 261 81.6
CARHR205290 Cardamine hirsuta HOM05D006238 ORTHO05D007458 1.9e-33 147.1 261 81.6
MD06G1200000 Malus domestica HOM05D006238 ORTHO05D007458 7.8e-32 141.7 269 59.9
Nitab4.5_0001961g0050 Nicotiana tabacum HOM05D006238 ORTHO05D007458 6.6e-31 138.7 299 49.2
Lsat_1_v5_gn_1_13640 Lactuca sativa HOM05D006238 ORTHO05D007458 8.6e-31 138.3 261 80.8
Nitab4.5_0004284g0060 Nicotiana tabacum HOM05D006238 ORTHO05D007458 1.5e-30 137.5 262 59.9
HPP92_013436 Vanilla planifolia HOM05D001674 ORTHO05D008374 1.9e-30 137.1 262 80.2
PGSC0003DMG401024548 Solanum tuberosum HOM05D006238 ORTHO05D007458 4.3e-30 136.0 265 78.5
PSO339G0502 Papaver somniferum HOM05D006238 ORTHO05D007458 5.6e-30 135.6 262 81.3
PSO384G2798 Papaver somniferum HOM05D006238 ORTHO05D007458 5.6e-30 135.6 262 80.9
Cc04_g15060 Coffea canephora HOM05D006238 ORTHO05D007458 6.2e-29 132.1 234 87.6
Nitab4.5_0001410g0100 Nicotiana tabacum HOM05D006238 ORTHO05D007458 4.0e-28 129.4 269 79.9
FAN08G1023 Fragaria x ananassa HOM05D000113 ORTHO05D002571 5.2e-28 129.0 257 80.2
SalBow5G1318 Salvia bowleyana HOM05D006238 ORTHO05D007458 5.2e-28 129.0 337 66.2
DCAR_016594 Daucus carota HOM05D006238 ORTHO05D007458 2.0e-27 127.1 231 88.7
FAN13G1324 Fragaria x ananassa HOM05D000113 ORTHO05D002571 2.6e-27 126.7 253 82.2
Gorai.008G197100 Gossypium raimondii HOM05D006238 ORTHO05D007458 7.6e-27 125.2 258 80.2
Peaxi162Scf00106g00109 Petunia axillaris HOM05D006238 ORTHO05D007458 7.6e-27 125.2 287 73.5
Cpa.g.sc94.12 Carica papaya HOM05D006238 ORTHO05D007458 1.4e-25 120.9 65 87.7
Zm00001eb008470 Zea mays HOM05D006238 ORTHO05D007458 1.4e-25 120.9 268 73.1
Dinv38791 Davidia involucrata HOM05D006238 ORTHO05D007458 1.9e-25 120.6 64 90.6
Pp3c19_5770 Physcomitrium patens HOM05D006238 ORTHO05D007458 1.6e-24 117.5 262 74.4
Cpa.g.sc94.13 Carica papaya HOM05D006238 ORTHO05D007458 2.7e-24 116.7 75 76.0
AUR62008501 Chenopodium quinoa HOM05D006238 ORTHO05D007458 6.0e-24 115.5 76 73.7
Oeu062485.1 Olea europaea HOM05D006238 ORTHO05D007458 2.3e-23 113.6 226 85.4
Phvul.009G193701 Phaseolus vulgaris HOM05D006238 ORTHO05D007458 2.3e-23 113.6 63 87.3
Manes.06G087000 Manihot esculenta HOM05D006238 ORTHO05D007458 3.0e-23 113.2 63 87.3
Nitab4.5_0005160g0060 Nicotiana tabacum HOM05D006238 ORTHO05D007458 8.6e-23 111.7 66 80.3
Sabra15G0078500 Salix brachista HOM05D006238 ORTHO05D007458 1.5e-22 110.9 97 59.8
QL05p088277 Quercus lobata HOM05D003602 ORTHO05D007458 1.9e-22 110.5 66 81.8
AUR62021591 Chenopodium quinoa HOM05D006238 ORTHO05D007458 1.2e-21 107.8 86 65.1
Sc10g0009770 Simmondsia chinensis HOM05D006238 ORTHO05D007458 1.2e-21 107.8 73 67.1
PGSC0003DMG400005395 Solanum tuberosum HOM05D006238 ORTHO05D007458 1.2e-21 107.8 63 81.0
SMO364G0258 Selaginella moellendorffii HOM05D006238 ORTHO05D007458 1.1e-20 104.8 260 69.6
Os03g0212200 Oryza sativa ssp. japonica HOM05D006238 ORTHO05D007458 6.8e-20 102.1 75 62.7
Rhsim12G0152200 Rhododendron simsii HOM05D006238 ORTHO05D007458 8.9e-20 101.7 319 55.2
HPP92_027112 Vanilla planifolia HOM05D006238 ORTHO05D007458 2.6e-19 100.1 68 70.6
CDE10G0764 Ceratophyllum demersum HOM05D000773 ORTHO05D000588 2.9e-18 96.7 76 60.5
Hund26925 Selenicereus undatus HOM05D006238 ORTHO05D007458 1.1e-17 94.7 66 69.7
AagrBONN_evm.TU.Sc2ySwM_228.2402 Anthoceros agrestis HOM05D006238 ORTHO05D007458 1.4e-17 94.4 63 66.7
Dinv10691 Davidia involucrata HOM05D000773 ORTHO05D000588 5.4e-17 92.4 207 88.9
Lj5A105G57 Lonicera japonica HOM05D006238 ORTHO05D007458 1.0e-15 88.2 51 82.4
vmacro16511 Vaccinium macrocarpon HOM05D006238 ORTHO05D007458 3.6e-13 79.7 339 50.7
Hund26924 Selenicereus undatus HOM05D006238 ORTHO05D007458 1.2e-11 74.7 66 57.6
Peaxi162Scf00201g00133 Petunia axillaris HOM05D006238 ORTHO05D007458 2.0e-11 73.9 73 56.2
Mapoly0043s0125 Marchantia polymorpha HOM05D006395 ORTHO05D007894 5.8e-11 72.4 249 50.2
CBR_g18689 Chara braunii HOM05D006238 ORTHO05D007458 6.4e-10 68.9 59 49.2
MCO07G688 Micromonas commoda HOM05D006238 ORTHO05D007458 9.3e-09 65.1 270 38.5
Hund05040 Selenicereus undatus HOM05D006395 ORTHO05D007894 9.3e-09 65.1 61 49.2
Nitab4.5_0000967g0070 Nicotiana tabacum HOM05D006395 ORTHO05D007894 1.6e-08 64.3 61 45.9
Solyc06g007250.4 Solanum lycopersicum HOM05D006395 ORTHO05D007894 1.6e-08 64.3 61 47.5
Sopen06g002210 Solanum pennellii HOM05D006395 ORTHO05D007894 1.6e-08 64.3 61 47.5
Peaxi162Scf00053g02113 Petunia axillaris HOM05D006395 ORTHO05D007894 2.1e-08 63.9 61 47.5
Cre12.g503600 Chlamydomonas reinhardtii HOM05D006238 ORTHO05D007458 2.7e-08 63.5 61 47.5
Nitab4.5_0001941g0070 Nicotiana tabacum HOM05D006395 ORTHO05D007894 2.7e-08 63.5 61 45.9
PGSC0003DMG400020546 Solanum tuberosum HOM05D006395 ORTHO05D007894 2.7e-08 63.5 61 47.5
Rhsim13G0066200 Rhododendron simsii HOM05D006395 ORTHO05D007894 4.6e-08 62.8 61 49.2
SMO198G0061 Selaginella moellendorffii HOM05D006395 ORTHO05D007894 4.6e-08 62.8 61 45.9
AagrBONN_evm.TU.Sc2ySwM_228.749 Anthoceros agrestis HOM05D006395 ORTHO05D007894 6.0e-08 62.4 66 42.4
Lj2C1089G4 Lonicera japonica HOM05D006395 ORTHO05D007894 6.0e-08 62.4 69 44.9
Lj9A530T24 Lonicera japonica HOM05D006395 ORTHO05D007894 6.0e-08 62.4 69 44.9
PGR102G2618 Punica granatum HOM05D006395 ORTHO05D007894 6.0e-08 62.4 61 45.9
QL93p0869_0056 Quercus lobata HOM05D000176 ORTHO05D000106 1.3e-07 61.2 31 93.5
Sc06g0008170 Simmondsia chinensis HOM05D006395 ORTHO05D007894 1.7e-07 60.8 68 38.2
Prupe.6G052000 Prunus persica HOM05D006395 ORTHO05D007894 2.3e-07 60.5 62 43.5
vmacro02938 Vaccinium macrocarpon HOM05D006395 ORTHO05D007894 2.3e-07 60.5 61 45.9
ATR0174G031 Amborella trichopoda HOM05D006395 ORTHO05D007894 3.0e-07 60.1 70 41.4
CAN.G241.20 Capsicum annuum HOM05D006395 ORTHO05D007894 3.9e-07 59.7 57 47.4
PRCOL_00001761 Prasinoderma coloniale HOM05D006238 ORTHO05D007458 3.9e-07 59.7 64 39.1
Duzib150G1550 Durio zibethinus HOM05D006395 ORTHO05D007894 6.6e-07 58.9 57 47.4
Ca_14986_v3 Cicer arietinum L. HOM05D006395 ORTHO05D007894 8.7e-07 58.5 61 42.6
Dinv28676 Davidia involucrata HOM05D006395 ORTHO05D007894 8.7e-07 58.5 68 41.2
SGA_v2.0_scaffold20G09294 Striga asiatica HOM05D006395 ORTHO05D007894 8.7e-07 58.5 62 48.4
Zm00001eb046860 Zea mays HOM05D006395 ORTHO05D007894 8.7e-07 58.5 63 42.9
Cpa.g.sc2.390 Carica papaya HOM05D006395 ORTHO05D007894 1.1e-06 58.2 61 42.6
Ah.11g047980 Amaranthus hybridus HOM05D006238 ORTHO05D007458 1.5e-06 57.8 70 45.7
Cc01_g14640 Coffea canephora HOM05D006395 ORTHO05D007894 1.5e-06 57.8 61 44.3
Cc03_g12880 Coffea canephora HOM05D006395 ORTHO05D007894 1.5e-06 57.8 61 44.3
TAR357G0003 Trochodendron aralioides HOM05D006395 ORTHO05D007894 1.5e-06 57.8 61 47.5
CBR_g52452 Chara braunii HOM05D006395 ORTHO05D007458 1.9e-06 57.4 64 39.1
CAN.G241.12 Capsicum annuum HOM05D006395 ORTHO05D007894 3.3e-06 56.6 55 45.5
Gohir.A03G027300 Gossypium hirsutum HOM05D006395 ORTHO05D007894 3.3e-06 56.6 60 43.3
Gohir.D03G141400 Gossypium hirsutum HOM05D006395 ORTHO05D007894 3.3e-06 56.6 60 43.3
Gorai.003G148100 Gossypium raimondii HOM05D006395 ORTHO05D007894 3.3e-06 56.6 60 43.3
SEGI_13349 Sequoiadendron giganteum HOM05D006395 ORTHO05D007894 3.3e-06 56.6 61 44.3
AL4G24880 Arabidopsis lyrata HOM05D006395 ORTHO05D007894 4.3e-06 56.2 60 41.7
Cfa011744 Carpinus fangiana HOM05D006395 ORTHO05D007894 4.3e-06 56.2 61 42.6
Sabra16G0174100 Salix brachista HOM05D006395 ORTHO05D007894 4.3e-06 56.2 61 41.0
Actinidia23216 Actinidia chinensis HOM05D006395 ORTHO05D007894 5.6e-06 55.8 68 39.7
Actinidia27062 Actinidia chinensis HOM05D006395 ORTHO05D007894 5.6e-06 55.8 68 39.7
AT2G30105 Arabidopsis thaliana HOM05D006395 ORTHO05D007894 5.6e-06 55.8 61 41.0
Haze_24385 Corylus avellana HOM05D006395 ORTHO05D007894 5.6e-06 55.8 61 42.6
Eucgr.B02227 Eucalyptus grandis HOM05D006395 ORTHO05D007894 5.6e-06 55.8 61 42.6
QL01p039673 Quercus lobata HOM05D006395 ORTHO05D007894 7.3e-06 55.5 61 42.6
VMungo0540G1476 Vigna mungo HOM05D006395 ORTHO05D007894 7.3e-06 55.5 61 41.0
DCAR_018217 Daucus carota HOM05D006395 ORTHO05D007894 9.6e-06 55.1 61 41.0
MBI15_g36485_MAGBIO Magnolia biondii HOM05D006395 ORTHO05D007894 9.6e-06 55.1 62 45.2


User provided reference genes

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