Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K01871 Eucalyptus grandis HOM05D007197 ORTHO05D009064 1.1e-59 233.0 114 100.0
Eucgr.J02088 Eucalyptus grandis HOM05D007197 ORTHO05D009064 2.6e-24 115.5 91 68.1
QL01p033595 Quercus lobata HOM05D007197 ORTHO05D009064 5.8e-16 87.8 105 45.7
TAR636G0394 Trochodendron aralioides HOM05D007197 ORTHO05D009064 9.9e-16 87.0 105 43.8
GSVIVG01025047001 Vitis vinifera HOM05D007197 ORTHO05D009064 1.3e-15 86.7 109 44.0
Thecc.09G328900 Theobroma cacao HOM05D007197 ORTHO05D009064 1.7e-15 86.3 105 45.7
Duzib168G0795 Durio zibethinus HOM05D007197 ORTHO05D009064 3.8e-15 85.1 106 46.2
TWI79G0955 Tripterygium wilfordii HOM05D007197 ORTHO05D009064 4.9e-15 84.7 91 47.3
Atru.chr7.1106 Acer truncatum HOM05D007197 ORTHO05D009064 6.4e-15 84.3 109 42.2
Cpa.g.sc252.16 Carica papaya HOM05D007197 ORTHO05D009064 1.4e-14 83.2 91 47.3
Cfa011437 Carpinus fangiana HOM05D007197 ORTHO05D009064 1.9e-14 82.8 93 45.2
AUR62041290 Chenopodium quinoa HOM05D007197 ORTHO05D009064 2.4e-14 82.4 76 50.0
Gohir.A05G098300 Gossypium hirsutum HOM05D007197 ORTHO05D009064 2.4e-14 82.4 91 49.5
Gohir.D05G098400 Gossypium hirsutum HOM05D007197 ORTHO05D009064 2.4e-14 82.4 91 50.5
COL.COLO4_15236 Corchorus olitorius HOM05D007197 ORTHO05D009064 3.2e-14 82.0 105 41.0
Gorai.009G102000 Gossypium raimondii HOM05D007197 ORTHO05D009064 4.2e-14 81.6 91 49.5
Nn2g10506 Nelumbo nucifera HOM05D007197 ORTHO05D009064 4.2e-14 81.6 91 48.4
Nn2g16045 Nelumbo nucifera HOM05D007197 ORTHO05D009064 4.2e-14 81.6 91 48.4
CSS0011816 Camellia sinensis var. sinensis HOM05D007197 ORTHO05D009064 5.4e-14 81.3 70 57.1
Actinidia03776 Actinidia chinensis HOM05D007197 ORTHO05D009064 7.1e-14 80.9 105 43.8
Haze_24013 Corylus avellana HOM05D007197 ORTHO05D009064 9.3e-14 80.5 79 49.4
Haze_24019 Corylus avellana HOM05D007197 ORTHO05D009064 9.3e-14 80.5 79 49.4
Dinv32855 Davidia involucrata HOM05D007197 ORTHO05D009064 1.2e-13 80.1 70 57.1
Hma1.2p1_0846F.1_g227730 Hydrangea macrophylla HOM05D007197 ORTHO05D009064 1.2e-13 80.1 105 43.8
EL10Ac7g15954 Beta vulgaris HOM05D007197 ORTHO05D009064 1.6e-13 79.7 56 57.1
CiPaw.13G100300 Carya illinoinensis HOM05D007197 ORTHO05D009064 1.6e-13 79.7 69 56.5
vmacro14500 Vaccinium macrocarpon HOM05D007197 ORTHO05D009064 1.6e-13 79.7 91 49.5
Prupe.6G066800 Prunus persica HOM05D007197 ORTHO05D009064 3.5e-13 78.6 54 66.7
Prupe.6G086100 Prunus persica HOM05D007197 ORTHO05D009064 3.5e-13 78.6 54 66.7
RcHm_v2.0_Chr5g0062661 Rosa chinensis HOM05D007197 ORTHO05D009064 4.6e-13 78.2 67 53.7
Hma1.2p1_0846F.1_g227720 Hydrangea macrophylla HOM05D007197 ORTHO05D009064 6.0e-13 77.8 90 47.8
Rhsim01G0224100 Rhododendron simsii HOM05D007197 ORTHO05D009064 1.3e-12 76.6 105 41.9
MELO3C013672.2 Cucumis melo HOM05D007197 ORTHO05D009064 1.8e-12 76.3 71 53.5
FAN11G2804 Fragaria x ananassa HOM05D007197 ORTHO05D009064 1.8e-12 76.3 68 50.0
Aqoxy4G03051 Aquilegia oxysepala HOM05D007197 ORTHO05D009064 2.3e-12 75.9 105 41.0
AUR62034127 Chenopodium quinoa HOM05D007197 ORTHO05D009064 2.3e-12 75.9 62 56.5
Hund18943 Selenicereus undatus HOM05D007197 ORTHO05D009064 2.3e-12 75.9 70 54.3
FAN21G2562 Fragaria x ananassa HOM05D007197 ORTHO05D009064 3.0e-12 75.5 68 50.0
HanXRQChr11g0340311 Helianthus annuus HOM05D007197 ORTHO05D009064 3.9e-12 75.1 105 36.2
PSO206G0023 Papaver somniferum HOM05D007197 ORTHO05D009064 5.1e-12 74.7 91 41.8
PSO339G6612 Papaver somniferum HOM05D007197 ORTHO05D009064 5.1e-12 74.7 91 41.8
Medtr4g062540 Medicago truncatula HOM05D007197 ORTHO05D009064 8.7e-12 73.9 108 39.8
Cc01_g12210 Coffea canephora HOM05D007197 ORTHO05D009064 1.1e-11 73.6 109 39.4
Hma1.2p1_0056F.1_g031656 Hydrangea macrophylla HOM05D007197 ORTHO05D009064 1.1e-11 73.6 55 63.6
Psat7g220240 Pisum sativum HOM05D007197 ORTHO05D009064 1.1e-11 73.6 105 36.2
CsaV3_6G022120 Cucumis sativus L. HOM05D007197 ORTHO05D009064 1.5e-11 73.2 71 50.7
Nn2g16043 Nelumbo nucifera HOM05D007197 ORTHO05D009064 1.5e-11 73.2 86 46.5
Ca_19199_v3 Cicer arietinum L. HOM05D007197 ORTHO05D009064 1.9e-11 72.8 103 40.8
MD11G1115100 Malus domestica HOM05D007197 ORTHO05D009064 5.6e-11 71.2 67 47.8
ClCG02G020670 Citrullus lanatus HOM05D007197 ORTHO05D009064 7.4e-11 70.9 56 60.7
ECA248G2344 Erigeron canadensis HOM05D007197 ORTHO05D009064 9.6e-11 70.5 103 35.9
ATR0033G040 Amborella trichopoda HOM05D007197 ORTHO05D009064 1.3e-10 70.1 105 39.0
CAN.G764.13 Capsicum annuum HOM05D007197 ORTHO05D009064 1.6e-10 69.7 81 44.4
TPR.G1052 Trifolium pratense HOM05D007197 ORTHO05D009064 1.6e-10 69.7 112 37.5
Nitab4.5_0000610g0220 Nicotiana tabacum HOM05D007197 ORTHO05D009064 2.1e-10 69.3 66 50.0
Sp1g06430 Schrenkiella parvula HOM05D007197 ORTHO05D009064 8.1e-10 67.4 92 39.1
Carub.0001s0710 Capsella rubella HOM05D007197 ORTHO05D009064 1.4e-09 66.6 92 38.0
Phvul.011G067900 Phaseolus vulgaris HOM05D007197 ORTHO05D009064 1.8e-09 66.2 74 44.6
VMungo1127G0131 Vigna mungo HOM05D007197 ORTHO05D009064 1.8e-09 66.2 70 44.3
Solyc11g073220.3 Solanum lycopersicum HOM05D007197 ORTHO05D009064 2.4e-09 65.9 81 42.0
Sopen11g030850 Solanum pennellii HOM05D007197 ORTHO05D009064 2.4e-09 65.9 81 42.0
PGSC0003DMG400015539 Solanum tuberosum HOM05D001223 ORTHO05D001058 2.4e-09 65.9 81 42.0
Thhalv10008243m.g Eutrema salsugineum HOM05D007197 ORTHO05D009064 3.1e-09 65.5 92 37.0
C08p03340 Brassica napus HOM05D007197 ORTHO05D009064 4.0e-09 65.1 92 37.0
BolC8t47130H Brassica oleracea HOM05D007197 ORTHO05D009064 4.0e-09 65.1 92 37.0
Glyma.11G143900 Glycine max HOM05D007197 ORTHO05D009064 4.0e-09 65.1 70 41.4
CARHR007550 Cardamine hirsuta HOM05D007197 ORTHO05D009064 5.3e-09 64.7 92 37.0
Lj3g0013433 Lotus japonicus HOM05D007197 ORTHO05D009064 5.3e-09 64.7 70 44.3
Nitab4.5_0003179g0070 Nicotiana tabacum HOM05D007197 ORTHO05D009064 6.9e-09 64.3 54 51.9
Oeu017383.1 Olea europaea HOM05D007197 ORTHO05D009064 9.0e-09 63.9 91 38.5
arahy.Tifrunner.gnm1.ann1.RPJA1V Arachis hypogaea HOM05D007197 ORTHO05D009064 1.2e-08 63.5 109 37.6
SGA_v2.0_scaffold257G45723 Striga asiatica HOM05D007197 ORTHO05D009064 1.5e-08 63.2 73 38.4
arahy.Tifrunner.gnm1.ann1.EBM8RS Arachis hypogaea HOM05D007197 ORTHO05D009064 2.6e-08 62.4 109 36.7
BcaB03g13374 Brassica carinata HOM05D007197 ORTHO05D009064 2.6e-08 62.4 89 37.1
DCAR_018914 Daucus carota HOM05D007197 ORTHO05D009064 9.9e-08 60.5 92 38.0
TPR.G6878 Trifolium pratense HOM05D000917 ORTHO05D000764 3.8e-07 58.5 66 42.4
Lalb_Chr19g0137651 Lupinus albus HOM05D007197 ORTHO05D009064 4.9e-07 58.2 104 37.5
Migut.N02658 Erythranthe guttata HOM05D007197 ORTHO05D009064 1.1e-06 57.0 73 37.0
Manes.11G135500 Manihot esculenta HOM05D007197 ORTHO05D009064 1.1e-06 57.0 39 59.0
A08p35470 Brassica napus HOM05D007197 ORTHO05D009064 4.2e-06 55.1 57 43.9
BraA08t35453Z Brassica rapa HOM05D007197 ORTHO05D009064 4.2e-06 55.1 57 43.9
FvH4_3g34810 Fragaria vesca HOM05D007197 ORTHO05D009064 4.2e-06 55.1 68 41.2
AT1G07745 Arabidopsis thaliana HOM05D007197 ORTHO05D009064 5.5e-06 54.7 92 32.6
Glyma.11G143700 Glycine max HOM05D007197 ORTHO05D009064 9.3e-06 53.9 50 44.0


User provided reference genes

Program Settings