Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K01689 Eucalyptus grandis HOM05D006173 ORTHO05D007685 1.1e-264 916.0 457 100.0
PGR142G0634 Punica granatum HOM05D006173 ORTHO05D007685 9.3e-198 693.7 457 74.8
Cfa019941 Carpinus fangiana HOM05D006173 ORTHO05D007685 2.3e-196 689.1 457 73.5
Atru.chr1.1516 Acer truncatum HOM05D006173 ORTHO05D007685 6.9e-193 677.6 457 73.3
CiPaw.10G124100 Carya illinoinensis HOM05D006173 ORTHO05D007685 1.2e-192 676.8 457 74.0
Potri.016G030400 Populus trichocarpa HOM05D006173 ORTHO05D007685 2.9e-191 672.2 457 68.3
Manes.10G077600 Manihot esculenta HOM05D006173 ORTHO05D007685 3.8e-191 671.8 455 71.2
Ciclev10011725m.g Citrus clementina HOM05D006173 ORTHO05D007685 4.9e-191 671.4 457 70.7
Prupe.7G021600 Prunus persica HOM05D006173 ORTHO05D007685 4.9e-191 671.4 457 73.3
TWI74G0774 Tripterygium wilfordii HOM05D006173 ORTHO05D007685 1.3e-188 663.3 459 72.3
Cpa.g.sc33.197 Carica papaya HOM05D006173 ORTHO05D007685 1.8e-188 662.9 460 69.1
Gorai.007G351000 Gossypium raimondii HOM05D006173 ORTHO05D007685 1.5e-187 659.8 453 70.0
Thecc.05G131000 Theobroma cacao HOM05D006173 ORTHO05D007685 2.5e-187 659.1 453 69.1
Gohir.D11G320800 Gossypium hirsutum HOM05D006173 ORTHO05D007685 5.6e-187 657.9 453 70.0
Gohir.A11G305400 Gossypium hirsutum HOM05D006173 ORTHO05D007685 3.7e-186 655.2 453 69.5
Glyma.19G125000 Glycine max HOM05D006173 ORTHO05D007685 5.3e-185 651.4 460 70.2
Dinv10196 Davidia involucrata HOM05D006173 ORTHO05D007685 1.2e-184 650.2 453 71.5
Sed0007984 Sechium edule HOM05D006173 ORTHO05D007685 7.1e-182 641.0 457 70.9
Glyma.03G120400 Glycine max HOM05D006173 ORTHO05D007685 9.3e-182 640.6 457 68.7
THA.LOC104814894 Tarenaya hassleriana HOM05D006173 ORTHO05D007685 2.3e-180 636.0 456 70.0
Haze_20298 Corylus avellana HOM05D006173 ORTHO05D007685 1.9e-179 632.9 476 65.3
Lj1g0020171 Lotus japonicus HOM05D006173 ORTHO05D007685 1.9e-179 632.9 460 67.0
Duzib106G1718 Durio zibethinus HOM05D006173 ORTHO05D007685 7.4e-179 630.9 453 67.1
Phvul.001G116600 Phaseolus vulgaris HOM05D006173 ORTHO05D007685 7.4e-179 630.9 459 67.8
Actinidia17973 Actinidia chinensis HOM05D006173 ORTHO05D007685 2.8e-178 629.0 457 67.0
FvH4_7g04320 Fragaria vesca HOM05D006173 ORTHO05D007685 2.8e-178 629.0 457 69.4
MELO3C009724.2 Cucumis melo HOM05D006173 ORTHO05D007685 8.2e-178 627.5 457 68.7
Hma1.2p1_0044F.1_g026020 Hydrangea macrophylla HOM05D006173 ORTHO05D007685 2.4e-177 625.9 468 65.2
CARHR167050 Cardamine hirsuta HOM05D006173 ORTHO05D007685 1.2e-176 623.6 459 69.7
Medtr7g088540 Medicago truncatula HOM05D006173 ORTHO05D007685 1.2e-176 623.6 459 66.4
AL5G38300 Arabidopsis lyrata HOM05D006173 ORTHO05D007685 1.7e-175 619.8 461 69.2
Sp5g05690 Schrenkiella parvula HOM05D006173 ORTHO05D007685 2.2e-175 619.4 459 68.8
Carub.0005s2364 Capsella rubella HOM05D006173 ORTHO05D007685 2.9e-175 619.0 461 69.0
Sabra16G0033900 Salix brachista HOM05D006173 ORTHO05D007685 3.8e-175 618.6 502 60.0
AT3G56900 Arabidopsis thaliana HOM05D006173 ORTHO05D007685 9.3e-174 614.0 461 68.5
Thhalv10005968m.g Eutrema salsugineum HOM05D006173 ORTHO05D007685 1.8e-172 609.8 459 65.6
CsaV3_3G039830 Cucumis sativus L. HOM05D006173 ORTHO05D007685 2.3e-172 609.4 457 65.6
EL10Ac3g07343 Beta vulgaris HOM05D006173 ORTHO05D007685 1.1e-171 607.1 457 64.3
BcaC07g40109 Brassica carinata HOM05D006173 ORTHO05D007685 1.5e-171 606.7 453 64.7
VMungo0331G1996 Vigna mungo HOM05D006173 ORTHO05D007685 2.5e-171 605.9 459 65.1
PSO541G4485 Papaver somniferum HOM05D006173 ORTHO05D007685 3.3e-171 605.5 451 65.0
arahy.Tifrunner.gnm1.ann1.NS6SL1 Arachis hypogaea HOM05D006173 ORTHO05D007685 1.6e-170 603.2 464 63.8
ClCG10G016510 Citrullus lanatus HOM05D006173 ORTHO05D007685 2.8e-170 602.4 497 61.4
BolC8t50833H Brassica oleracea HOM05D006173 ORTHO05D007685 1.8e-169 599.7 459 63.6
A09p49770 Brassica napus HOM05D006173 ORTHO05D007685 5.3e-169 598.2 459 63.6
BraA09t40430Z Brassica rapa HOM05D006173 ORTHO05D007685 5.3e-169 598.2 459 63.6
PGSC0003DMG400017881 Solanum tuberosum HOM05D006173 ORTHO05D007685 5.3e-169 598.2 457 65.2
MSTRG.10773 Avicennia marina HOM05D006173 ORTHO05D007685 6.9e-169 597.8 451 66.1
PSO675G1003 Papaver somniferum HOM05D006173 ORTHO05D007685 2.0e-168 596.3 451 64.5
C08p32150 Brassica napus HOM05D006173 ORTHO05D007685 4.5e-168 595.1 459 63.6
Migut.K00169 Erythranthe guttata HOM05D006173 ORTHO05D007685 7.7e-168 594.3 451 66.5
FAN10G0117 Fragaria x ananassa HOM05D006173 ORTHO05D007685 3.8e-167 592.0 468 63.2
Sopen08g011280 Solanum pennellii HOM05D006173 ORTHO05D007685 3.8e-167 592.0 457 64.6
Solyc08g016801.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 6.5e-167 591.3 457 64.6
BcaC07g40002 Brassica carinata HOM05D006173 ORTHO05D007685 2.5e-166 589.3 453 63.8
Oeu060754.2 Olea europaea HOM05D006173 ORTHO05D007685 1.0e-164 583.9 494 59.3
TPR.G27968 Trifolium pratense HOM05D006173 ORTHO05D007685 7.4e-163 577.8 419 68.5
Aa31LG10G11760 Aethionema arabicum HOM05D006173 ORTHO05D007685 4.8e-162 575.1 533 56.5
arahy.Tifrunner.gnm1.ann1.TSE1DU Arachis hypogaea HOM05D006173 ORTHO05D007685 8.5e-159 564.3 458 61.4
ECA247G0085 Erigeron canadensis HOM05D006173 ORTHO05D007685 1.1e-158 563.9 456 62.1
Cc06_g22820 Coffea canephora HOM05D006173 ORTHO05D007685 1.4e-158 563.5 479 58.2
FAN01G1644 Fragaria x ananassa HOM05D006173 ORTHO05D007685 9.4e-158 560.8 566 53.0
CSS0033436 Camellia sinensis var. sinensis HOM05D006173 ORTHO05D007685 1.6e-157 560.1 436 66.1
MD12G1112000 Malus domestica HOM05D006173 ORTHO05D007685 3.0e-156 555.8 534 54.7
Os12g0129400 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 1.7e-154 550.1 454 56.6
Zm00001eb405260 Zea mays HOM05D006173 ORTHO05D007685 2.2e-154 549.7 457 57.3
Os11g0132700 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 8.2e-154 547.7 454 55.7
Peaxi162Scf00937g00117 Petunia axillaris HOM05D006173 ORTHO05D007685 2.6e-152 542.7 436 61.5
Lsat_1_v5_gn_9_32341 Lactuca sativa HOM05D006173 ORTHO05D007685 1.7e-151 540.0 456 60.3
FAN06G1001 Fragaria x ananassa HOM05D006173 ORTHO05D007685 7.2e-150 534.6 478 57.9
SEGI_22413 Sequoiadendron giganteum HOM05D006173 ORTHO05D007685 5.2e-148 528.5 465 57.0
AUR62020996 Chenopodium quinoa HOM05D006173 ORTHO05D007685 8.2e-146 521.2 442 60.0
HanXRQChr14g0457301 Helianthus annuus HOM05D006173 ORTHO05D007685 1.2e-144 517.3 453 58.3
TAR623G0939 Trochodendron aralioides HOM05D006173 ORTHO05D007685 6.1e-141 505.0 408 63.2
Hund19061 Selenicereus undatus HOM05D006173 ORTHO05D007685 6.3e-138 495.0 436 56.4
CDE02G3082 Ceratophyllum demersum HOM05D006173 ORTHO05D007685 1.8e-137 493.4 458 57.4
Aqoxy3G01734 Aquilegia oxysepala HOM05D006173 ORTHO05D007685 1.4e-132 477.2 333 67.0
vmacro07758 Vaccinium macrocarpon HOM05D006173 ORTHO05D007685 3.0e-132 476.1 488 53.9
Sc19g0007880 Simmondsia chinensis HOM05D006173 ORTHO05D007685 5.2e-132 475.3 412 57.8
Psat3g082320 Pisum sativum HOM05D006173 ORTHO05D007685 6.6e-127 458.4 362 66.6
SalBow1G0987 Salvia bowleyana HOM05D006173 ORTHO05D007685 2.8e-125 453.0 469 51.6
Mapoly0010s0124 Marchantia polymorpha HOM05D006173 ORTHO05D007685 2.3e-119 433.3 484 45.9
AUR62018437 Chenopodium quinoa HOM05D006173 ORTHO05D007685 2.0e-115 420.2 416 53.1
SGA_v2.0_scaffold106G30556 Striga asiatica HOM05D006173 ORTHO05D007685 5.4e-113 412.1 470 47.9
RhsimUnG0020600 Rhododendron simsii HOM05D006173 ORTHO05D007685 9.5e-110 401.4 456 50.0
SMO116G0186 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 2.0e-107 393.7 466 44.0
SMO133G0039 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 2.6e-107 393.3 466 44.0
Ca_08352_v3 Cicer arietinum L. HOM05D006173 ORTHO05D007685 2.4e-105 386.7 307 63.5
MBI19_g25019_MAGBIO Magnolia biondii HOM05D006173 ORTHO05D007685 2.7e-104 383.3 397 52.9
Pp3c11_18220 Physcomitrium patens HOM05D006173 ORTHO05D007685 1.1e-102 377.9 466 41.6
VMungo1383G1641 Vigna mungo HOM05D006173 ORTHO05D007685 2.5e-102 376.7 417 51.6
GSVIVG01025850001 Vitis vinifera HOM05D006173 ORTHO05D007685 2.0e-99 367.1 210 79.5
Solyc08g016808.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 2.2e-98 363.6 343 58.0
MD14G1101100 Malus domestica HOM05D006173 ORTHO05D007685 4.4e-91 339.3 214 73.8
Lalb_Chr22g0358001 Lupinus albus HOM05D006173 ORTHO05D007685 5.4e-89 332.4 201 77.1
Nitab4.5_0000211g0120 Nicotiana tabacum HOM05D006173 ORTHO05D007685 1.5e-86 324.3 271 60.1
RcHm_v2.0_Chr1g0329271 Rosa chinensis HOM05D006173 ORTHO05D007685 1.5e-86 324.3 201 74.1
Nitab4.5_0003840g0020 Nicotiana tabacum HOM05D006173 ORTHO05D007685 3.3e-86 323.2 263 58.9
QL07p014498 Quercus lobata HOM05D006173 ORTHO05D007685 8.1e-85 318.5 173 83.2
ATR0307G134 Amborella trichopoda HOM05D006173 ORTHO05D007685 5.4e-81 305.8 200 69.0
Lalb_Chr22g0357991 Lupinus albus HOM05D006173 ORTHO05D007685 3.7e-77 293.1 240 60.4
RcHm_v2.0_Chr1g0329281 Rosa chinensis HOM05D006173 ORTHO05D007685 2.4e-76 290.4 237 60.8
FAN03G1994 Fragaria x ananassa HOM05D006173 ORTHO05D007685 3.8e-74 283.1 245 58.8
HPP92_002170 Vanilla planifolia HOM05D006173 ORTHO05D007685 1.4e-73 281.2 169 72.2
SMO069G0001 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 1.6e-72 277.7 228 55.3
Lj1A24G66 Lonicera japonica HOM05D006173 ORTHO05D007685 7.4e-70 268.9 151 80.8
MD14G1101000 Malus domestica HOM05D006173 ORTHO05D007685 2.6e-67 260.4 255 54.1
Lj1A24G67 Lonicera japonica HOM05D006173 ORTHO05D007685 7.6e-67 258.8 269 52.4
ATR0307G100 Amborella trichopoda HOM05D006173 ORTHO05D007685 6.0e-64 249.2 240 50.8
CANSAT64G0701 Cannabis sativa HOM05D006173 ORTHO05D007685 6.3e-61 239.2 138 77.5
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 3.4e-59 233.4 221 52.0
unitig_46.g18486 Utricularia gibba HOM05D006173 ORTHO05D007685 4.2e-57 226.5 184 58.2
Solyc08g036600.3 Solanum lycopersicum HOM05D006173 ORTHO05D007685 3.6e-56 223.4 217 51.2
GSVIVG01025851001 Vitis vinifera HOM05D006173 ORTHO05D007685 3.7e-53 213.4 186 58.6
QL07p014493 Quercus lobata HOM05D006173 ORTHO05D007685 1.5e-51 208.0 193 54.9
DCAR_020632 Daucus carota HOM05D002466 ORTHO05D002668 3.2e-49 200.3 159 62.3
CBR_g54315 Chara braunii HOM05D006173 ORTHO05D007685 4.7e-48 196.4 338 35.8
SGA_v2.0_scaffold106G30559 Striga asiatica HOM05D000268 ORTHO05D000261 1.5e-38 164.9 263 39.9
Nitab4.5_0000275g0010 Nicotiana tabacum HOM05D006173 ORTHO05D007685 2.6e-38 164.1 88 77.3
TAR623G0990 Trochodendron aralioides HOM05D006173 ORTHO05D007685 1.1e-36 158.7 97 75.3
PRCOL_00002577 Prasinoderma coloniale HOM05D006173 ORTHO05D007685 1.3e-34 151.8 276 32.6
Nitab4.5_0000211g0140 Nicotiana tabacum HOM05D006173 ORTHO05D007685 2.6e-30 137.5 85 72.9
Nitab4.5_0003840g0030 Nicotiana tabacum HOM05D006173 ORTHO05D007685 3.8e-26 123.6 70 74.3
Lj2A730T36 Lonicera japonica HOM05D006173 ORTHO05D007685 9.4e-25 119.0 248 35.9
MCO12G281 Micromonas commoda HOM05D006173 ORTHO05D007685 1.6e-19 101.7 218 33.5
Cre10.g466300 Chlamydomonas reinhardtii HOM05D006173 ORTHO05D007685 2.6e-14 84.3 353 28.9
Lj2A730T35 Lonicera japonica HOM05D006173 ORTHO05D007685 1.4e-12 78.6 50 76.0
Lsat_1_v5_gn_4_93961 Lactuca sativa HOM05D006173 ORTHO05D007685 4.1e-12 77.0 51 72.5
Os12g0131300 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 4.5e-11 73.6 50 62.0
Psat7g244360 Pisum sativum HOM05D000821 ORTHO05D000931 5.2e-07 60.1 43 60.5


User provided reference genes

Program Settings