Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K01200 Eucalyptus grandis HOM05D005636 ORTHO05D006912 4.6e-205 717.6 353 100.0
Ciclev10031950m.g Citrus clementina HOM05D005636 ORTHO05D006912 9.3e-113 411.0 309 67.6
MD17G1140200 Malus domestica HOM05D005636 ORTHO05D006912 2.6e-107 392.9 338 60.9
PGR142G4384 Punica granatum HOM05D005636 ORTHO05D006912 1.7e-106 390.2 369 60.2
Dinv31558 Davidia involucrata HOM05D005636 ORTHO05D006912 7.1e-105 384.8 317 60.9
Cpa.g.sc50.79 Carica papaya HOM05D005636 ORTHO05D006912 4.6e-104 382.1 306 62.7
FvH4_6g38130 Fragaria vesca HOM05D005636 ORTHO05D006912 7.9e-104 381.3 344 59.3
RcHm_v2.0_Chr2g0151351 Rosa chinensis HOM05D005636 ORTHO05D006912 7.9e-104 381.3 371 56.1
CSS0038062 Camellia sinensis var. sinensis HOM05D005636 ORTHO05D006912 3.0e-103 379.4 354 58.5
FAN14G2746 Fragaria x ananassa HOM05D005636 ORTHO05D006912 8.7e-103 377.9 340 59.1
Actinidia11200 Actinidia chinensis HOM05D005636 ORTHO05D006912 1.1e-102 377.5 314 62.7
FAN09G4115 Fragaria x ananassa HOM05D005636 ORTHO05D006912 1.1e-102 377.5 343 59.5
Thecc.01G161100 Theobroma cacao HOM05D005636 ORTHO05D006912 1.1e-102 377.5 359 57.4
Atru.chr1.3606 Acer truncatum HOM05D005636 ORTHO05D006912 2.5e-102 376.3 359 57.1
MD09G1152800 Malus domestica HOM05D005636 ORTHO05D006912 4.3e-102 375.6 354 58.2
MELO3C014464.2 Cucumis melo HOM05D005636 ORTHO05D006912 5.6e-102 375.2 254 68.1
FAN05G0596 Fragaria x ananassa HOM05D005636 ORTHO05D006912 7.4e-102 374.8 341 58.9
Potri.002G060600 Populus trichocarpa HOM05D005636 ORTHO05D006912 1.6e-101 373.6 291 63.2
CsaV3_6G038020 Cucumis sativus L. HOM05D005636 ORTHO05D006912 6.2e-101 371.7 355 55.2
Sabra02G0049100 Salix brachista HOM05D005636 ORTHO05D006912 8.2e-101 371.3 259 68.7
Sabra05G0153000 Salix brachista HOM05D005636 ORTHO05D006912 2.4e-100 369.8 226 75.7
COL.COLO4_33742 Corchorus olitorius HOM05D005636 ORTHO05D006912 4.0e-100 369.0 311 62.1
Prupe.3G171400 Prunus persica HOM05D005636 ORTHO05D006912 6.9e-100 368.2 330 59.7
GSVIVG01000791001 Vitis vinifera HOM05D005636 ORTHO05D006912 6.9e-100 368.2 226 77.0
Cc05_g09330 Coffea canephora HOM05D005636 ORTHO05D006912 9.0e-100 367.9 341 58.4
Nitab4.5_0001675g0040 Nicotiana tabacum HOM05D005636 ORTHO05D006912 1.5e-99 367.1 346 55.8
SalBow7G3906 Salvia bowleyana HOM05D005636 ORTHO05D006912 4.5e-99 365.5 352 56.8
Duzib187G1993 Durio zibethinus HOM05D005636 ORTHO05D006912 7.6e-99 364.8 315 60.6
Gohir.D04G036900 Gossypium hirsutum HOM05D005636 ORTHO05D006912 7.6e-99 364.8 326 58.6
HanXRQChr12g0369761 Helianthus annuus HOM05D005636 ORTHO05D006912 1.0e-98 364.4 240 70.8
Gohir.A05G378700 Gossypium hirsutum HOM05D005636 ORTHO05D006912 1.3e-98 364.0 326 58.3
Hma1.2p1_0722F.1_g208750 Hydrangea macrophylla HOM05D005636 ORTHO05D006912 1.3e-98 364.0 359 55.2
Gorai.012G041700 Gossypium raimondii HOM05D005636 ORTHO05D006912 1.7e-98 363.6 326 58.3
Cfa022913 Carpinus fangiana HOM05D005636 ORTHO05D006912 2.9e-98 362.8 221 77.8
Lj6g0012077 Lotus japonicus HOM05D005636 ORTHO05D006912 4.9e-98 362.1 281 64.4
Phvul.005G057920 Phaseolus vulgaris HOM05D005636 ORTHO05D006912 4.9e-98 362.1 333 55.6
Medtr1g046360 Medicago truncatula HOM05D005636 ORTHO05D006912 8.4e-98 361.3 279 63.4
CARHR169230 Cardamine hirsuta HOM05D005636 ORTHO05D006912 1.1e-97 360.9 346 55.8
Glyma.20G056400 Glycine max HOM05D005636 ORTHO05D006912 1.1e-97 360.9 294 60.9
Lsat_1_v5_gn_8_32020 Lactuca sativa HOM05D005636 ORTHO05D006912 1.1e-97 360.9 255 69.4
Phvul.002G231100 Phaseolus vulgaris HOM05D005636 ORTHO05D006912 1.1e-97 360.9 333 56.2
Potri.005G201100 Populus trichocarpa HOM05D005636 ORTHO05D006912 1.1e-97 360.9 226 73.9
TPR.G37891 Trifolium pratense HOM05D005636 ORTHO05D006912 2.5e-97 359.8 303 61.1
Medtr3g079530 Medicago truncatula HOM05D005636 ORTHO05D006912 4.2e-97 359.0 279 63.4
Manes.02G084000 Manihot esculenta HOM05D005636 ORTHO05D006912 9.3e-97 357.8 352 53.4
Sopen07g029330 Solanum pennellii HOM05D005636 ORTHO05D006912 9.3e-97 357.8 306 61.1
Carub.0005s2561 Capsella rubella HOM05D005636 ORTHO05D006912 1.2e-96 357.5 353 55.2
Solyc07g055980.3 Solanum lycopersicum HOM05D005636 ORTHO05D006912 1.2e-96 357.5 226 73.9
Sed0000049 Sechium edule HOM05D005636 ORTHO05D006912 2.7e-96 356.3 276 62.7
PGSC0003DMG400017343 Solanum tuberosum HOM05D005636 ORTHO05D006912 2.7e-96 356.3 306 60.8
THA.LOC104802275 Tarenaya hassleriana HOM05D005636 ORTHO05D006912 2.7e-96 356.3 262 67.2
Rhsim06G0118100 Rhododendron simsii HOM05D005636 ORTHO05D006912 6.0e-96 355.1 384 52.3
CiPaw.03G189200 Carya illinoinensis HOM05D005636 ORTHO05D006912 7.9e-96 354.8 226 76.1
Ca_16256_v3 Cicer arietinum L. HOM05D005636 ORTHO05D006912 1.0e-95 354.4 356 54.2
PGSC0003DMG400007795 Solanum tuberosum HOM05D005636 ORTHO05D006912 1.0e-95 354.4 228 72.8
Lalb_Chr17g0335961 Lupinus albus HOM05D005636 ORTHO05D006912 1.3e-95 354.0 233 72.1
Psat5g112320 Pisum sativum HOM05D005636 ORTHO05D006912 1.3e-95 354.0 278 63.7
ECA233G1750 Erigeron canadensis HOM05D005636 ORTHO05D006912 3.0e-95 352.8 221 73.8
BcaC08g44944 Brassica carinata HOM05D005636 ORTHO05D006912 3.9e-95 352.4 226 73.5
ClCG09G022370 Citrullus lanatus HOM05D005636 ORTHO05D006912 3.9e-95 352.4 297 59.3
Solyc12g011020.2 Solanum lycopersicum HOM05D005636 ORTHO05D006912 3.9e-95 352.4 226 72.1
AL5G40630 Arabidopsis lyrata HOM05D005636 ORTHO05D006912 5.1e-95 352.1 346 55.5
Thhalv10006084m.g Eutrema salsugineum HOM05D005636 ORTHO05D006912 5.1e-95 352.1 346 54.9
CAN.G585.52 Capsicum annuum HOM05D005636 ORTHO05D006912 6.7e-95 351.7 253 67.2
Peaxi162Scf00807g00219 Petunia axillaris HOM05D005636 ORTHO05D006912 6.7e-95 351.7 298 59.1
Oeu020065.1 Olea europaea HOM05D005636 ORTHO05D006912 1.5e-94 350.5 354 54.8
Sp5g04030 Schrenkiella parvula HOM05D005636 ORTHO05D006912 1.9e-94 350.1 348 55.5
Aa31LG10G13390 Aethionema arabicum HOM05D005636 ORTHO05D006912 2.5e-94 349.7 354 54.5
Lalb_Chr04g0257641 Lupinus albus HOM05D005636 ORTHO05D006912 3.3e-94 349.4 222 73.9
TAR627G0895 Trochodendron aralioides HOM05D005636 ORTHO05D006912 9.6e-94 347.8 315 57.1
BraA07t30084Z Brassica rapa HOM05D005636 ORTHO05D006912 1.6e-93 347.1 357 54.9
HanXRQChr13g0387431 Helianthus annuus HOM05D005636 ORTHO05D006912 1.6e-93 347.1 322 56.5
Nitab4.5_0006934g0010 Nicotiana tabacum HOM05D005636 ORTHO05D006912 1.6e-93 347.1 299 59.9
C06p25760 Brassica napus HOM05D005636 ORTHO05D006912 2.8e-93 346.3 355 54.6
BolC6t37738H Brassica oleracea HOM05D005636 ORTHO05D006912 2.8e-93 346.3 355 54.6
A07p24370 Brassica napus HOM05D005636 ORTHO05D006912 3.7e-93 345.9 355 55.2
BcaB02g07496 Brassica carinata HOM05D005636 ORTHO05D006912 4.8e-93 345.5 353 53.8
SGA_v2.0_scaffold130G34360 Striga asiatica HOM05D005636 ORTHO05D006912 8.2e-93 344.7 295 59.7
Sopen12g006380 Solanum pennellii HOM05D005636 ORTHO05D006912 1.1e-92 344.4 295 60.0
Nitab4.5_0005557g0010 Nicotiana tabacum HOM05D005636 ORTHO05D006912 1.8e-92 343.6 346 53.5
AT3G58830 Arabidopsis thaliana HOM05D005636 ORTHO05D006912 4.1e-92 342.4 357 53.2
THA.LOC104803221 Tarenaya hassleriana HOM05D005636 ORTHO05D006912 4.1e-92 342.4 355 52.4
CAN.G164.23 Capsicum annuum HOM05D005636 ORTHO05D006912 5.3e-92 342.0 287 60.3
Oeu040028.1 Olea europaea HOM05D005636 ORTHO05D006912 9.0e-92 341.3 344 54.4
SalBow7G1748 Salvia bowleyana HOM05D005636 ORTHO05D006912 7.6e-91 338.2 221 70.6
VMungo0540G1884 Vigna mungo HOM05D005636 ORTHO05D006912 1.7e-90 337.0 308 58.4
Peaxi162Scf00111g00031 Petunia axillaris HOM05D005636 ORTHO05D006912 3.8e-90 335.9 226 70.8
arahy.Tifrunner.gnm1.ann1.59ND6F Arachis hypogaea HOM05D005636 ORTHO05D006912 8.5e-90 334.7 258 63.2
Nn6g34386 Nelumbo nucifera HOM05D005636 ORTHO05D006912 2.7e-88 329.7 338 52.1
Migut.M00513 Erythranthe guttata HOM05D005636 ORTHO05D006912 4.6e-88 328.9 359 51.5
QL08p044016 Quercus lobata HOM05D005636 ORTHO05D006912 8.7e-87 324.7 304 56.2
vmacro12452 Vaccinium macrocarpon HOM05D005636 ORTHO05D006912 1.5e-86 323.9 292 57.9
MSTRG.6754 Avicennia marina HOM05D005636 ORTHO05D006912 2.5e-86 323.2 326 56.1
VMungo0540G1461 Vigna mungo HOM05D005636 ORTHO05D006912 1.1e-84 317.8 327 52.3
PSO675G1578 Papaver somniferum HOM05D005636 ORTHO05D006912 1.2e-83 314.3 277 53.8
BcaC08g44945 Brassica carinata HOM05D005636 ORTHO05D006912 3.8e-82 309.3 355 51.0
PSO541G3223 Papaver somniferum HOM05D005636 ORTHO05D006912 6.5e-82 308.5 226 60.2
Nitab4.5_0000446g0070 Nicotiana tabacum HOM05D005636 ORTHO05D006912 3.2e-81 306.2 298 54.4
TWI59G0166 Tripterygium wilfordii HOM05D005636 ORTHO05D006912 3.2e-81 306.2 336 51.2
Hma1.2p1_0888F.1_g232810 Hydrangea macrophylla HOM05D005636 ORTHO05D006912 7.2e-81 305.1 328 51.5
Aqoxy1G01878 Aquilegia oxysepala HOM05D005636 ORTHO05D006912 1.4e-79 300.8 277 52.7
unitig_0.g2024 Utricularia gibba HOM05D005636 ORTHO05D006912 1.3e-77 294.3 276 52.9
ATR0763G116 Amborella trichopoda HOM05D005636 ORTHO05D006912 3.1e-76 289.7 217 61.8
CAN.G732.7 Capsicum annuum HOM05D005636 ORTHO05D006912 5.3e-76 288.9 199 69.3
Sc14g0000770 Simmondsia chinensis HOM05D005636 ORTHO05D006912 1.4e-73 280.8 215 60.0
CDE08G0457 Ceratophyllum demersum HOM05D005636 ORTHO05D006912 4.7e-72 275.8 213 59.6
SGA_v2.0_scaffold70G23671 Striga asiatica HOM05D005636 ORTHO05D006912 1.4e-71 274.2 248 54.8
SEGI_36348 Sequoiadendron giganteum HOM05D005636 ORTHO05D006912 8.8e-71 271.6 305 49.2
EL10Ac8g19235 Beta vulgaris HOM05D005636 ORTHO05D006912 1.7e-69 267.3 218 60.6
arahy.Tifrunner.gnm1.ann1.LGDT7B Arachis hypogaea HOM05D005636 ORTHO05D006912 3.7e-69 266.2 165 75.2
AUR62033992 Chenopodium quinoa HOM05D005636 ORTHO05D006912 4.1e-68 262.7 213 56.8
Ah.04g158730 Amaranthus hybridus HOM05D005636 ORTHO05D006912 4.5e-67 259.2 197 59.9
AagrBONN_evm.TU.Sc2ySwM_228.4819 Anthoceros agrestis HOM05D005636 ORTHO05D006912 7.7e-67 258.5 257 49.8
AUR62027489 Chenopodium quinoa HOM05D005636 ORTHO05D006912 1.7e-66 257.3 213 56.3
Os01g0796500 Oryza sativa ssp. japonica HOM05D005636 ORTHO05D006912 6.5e-66 255.4 221 55.2
Haze_13492 Corylus avellana HOM05D005636 ORTHO05D006912 4.2e-65 252.7 218 59.2
Mapoly0095s0041 Marchantia polymorpha HOM05D005636 ORTHO05D006912 2.7e-64 250.0 227 51.1
Actinidia32519 Actinidia chinensis HOM05D005636 ORTHO05D006912 3.6e-64 249.6 234 56.0
MSTRG.14295 Avicennia marina HOM05D005636 ORTHO05D006912 3.6e-64 249.6 151 72.2
Pp3c4_17380 Physcomitrium patens HOM05D005636 ORTHO05D006912 3.6e-64 249.6 211 54.0
SMO367G0867 Selaginella moellendorffii HOM05D005636 ORTHO05D006912 8.0e-64 248.4 216 54.2
CANSAT64G2722 Cannabis sativa HOM05D005636 ORTHO05D006912 6.7e-63 245.4 155 75.5
HPP92_010206 Vanilla planifolia HOM05D002349 ORTHO05D002464 5.3e-60 235.7 189 59.8
CBR_g66789 Chara braunii HOM05D005636 ORTHO05D006912 1.6e-51 207.6 182 52.2
Lj1A625T29 Lonicera japonica HOM05D005636 ORTHO05D006912 1.7e-50 204.1 181 56.9
Cre04.g219900 Chlamydomonas reinhardtii HOM05D005636 ORTHO05D006912 9.5e-49 198.4 206 45.6
DCAR_009796 Daucus carota HOM05D005636 ORTHO05D006912 3.3e-41 173.3 330 34.5
RcHm_v2.0_Chr2g0151251 Rosa chinensis HOM05D005636 ORTHO05D006912 5.2e-39 166.0 99 79.8
MCO16G670 Micromonas commoda HOM05D005636 ORTHO05D006912 1.8e-36 157.5 164 45.7
PRCOL_00003225 Prasinoderma coloniale HOM05D005636 ORTHO05D006912 3.0e-34 150.2 219 37.4
AagrBONN_evm.TU.Sc2ySwM_344.2384 Anthoceros agrestis HOM05D005636 ORTHO05D006912 5.2e-31 139.4 121 52.9
Zm00001eb150880 Zea mays HOM05D005636 ORTHO05D006912 1.1e-23 115.2 102 53.9
CAN.G44.13 Capsicum annuum HOM05D005636 ORTHO05D006912 3.1e-23 113.6 68 77.9
AagrBONN_evm.TU.Sc2ySwM_344.2381 Anthoceros agrestis HOM05D005636 ORTHO05D006912 2.7e-19 100.5 82 56.1
CAN.G1530.4 Capsicum annuum HOM05D005636 ORTHO05D017742 2.3e-18 97.4 58 77.6
VMungo0720G3119 Vigna mungo HOM05D000196 ORTHO05D001288 4.7e-08 63.2 38 76.3
A04p02350 Brassica napus HOM05D005636 ORTHO05D006912 6.2e-08 62.8 58 56.9
Cfa023890 Carpinus fangiana HOM05D005636 ORTHO05D123467 8.1e-08 62.4 108 36.1


User provided reference genes

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