Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K00825 Eucalyptus grandis HOM05D001891 ORTHO05D004048 1.5e-59 232.6 118 100.0
Eucgr.K00861 Eucalyptus grandis HOM05D001891 ORTHO05D004048 4.3e-46 188.0 118 83.9
GSVIVG01030625001 Vitis vinifera HOM05D001891 ORTHO05D004048 1.0e-39 166.8 118 71.2
Manes.12G078400 Manihot esculenta HOM05D001891 ORTHO05D004048 2.3e-39 165.6 118 70.3
CSS0024189 Camellia sinensis var. sinensis HOM05D001891 ORTHO05D004048 1.5e-38 162.9 118 68.6
Phvul.005G113600 Phaseolus vulgaris HOM05D001891 ORTHO05D004048 1.5e-38 162.9 118 69.5
Actinidia32079 Actinidia chinensis HOM05D001891 ORTHO05D004048 1.9e-38 162.5 118 68.6
Cfa014439 Carpinus fangiana HOM05D001891 ORTHO05D005832 1.9e-38 162.5 115 68.7
Haze_12898 Corylus avellana HOM05D001891 ORTHO05D004048 1.9e-38 162.5 118 66.9
VMungo1080G1612 Vigna mungo HOM05D001891 ORTHO05D004048 1.9e-38 162.5 118 68.6
arahy.Tifrunner.gnm1.ann1.6C63SS Arachis hypogaea HOM05D001891 ORTHO05D004048 2.5e-38 162.2 118 68.6
arahy.Tifrunner.gnm1.ann1.MDYX4P Arachis hypogaea HOM05D001891 ORTHO05D004048 2.5e-38 162.2 118 68.6
Ciclev10016204m.g Citrus clementina HOM05D001891 ORTHO05D004048 3.3e-38 161.8 118 68.6
Glyma.13G306700 Glycine max HOM05D001891 ORTHO05D004048 3.3e-38 161.8 118 68.6
Lalb_Chr01g0005561 Lupinus albus HOM05D001891 ORTHO05D004048 3.3e-38 161.8 118 69.5
ClCG02G008440 Citrullus lanatus HOM05D001891 ORTHO05D004048 4.3e-38 161.4 118 69.5
Aa31LG8G8420 Aethionema arabicum HOM05D001891 ORTHO05D004048 5.6e-38 161.0 118 69.5
AT3G21865 Arabidopsis thaliana HOM05D001891 ORTHO05D004048 5.6e-38 161.0 118 69.5
Duzib248G1135 Durio zibethinus HOM05D001891 ORTHO05D004048 5.6e-38 161.0 118 66.9
THA.LOC104808497 Tarenaya hassleriana HOM05D001891 ORTHO05D004048 5.6e-38 161.0 118 68.6
CsaV3_2G035190 Cucumis sativus L. HOM05D001891 ORTHO05D004048 7.3e-38 160.6 118 68.6
Duzib132G0769 Durio zibethinus HOM05D001891 ORTHO05D004048 7.3e-38 160.6 115 67.0
Nn1g06995 Nelumbo nucifera HOM05D001891 ORTHO05D004048 7.3e-38 160.6 115 69.6
TWI18G0897 Tripterygium wilfordii HOM05D001891 ORTHO05D004048 9.5e-38 160.2 118 66.9
CAN.G921.6 Capsicum annuum HOM05D001891 ORTHO05D004048 1.2e-37 159.8 118 68.6
MELO3C019235.2 Cucumis melo HOM05D001891 ORTHO05D004048 1.2e-37 159.8 118 68.6
Lalb_Chr03g0028901 Lupinus albus HOM05D001891 ORTHO05D004048 1.2e-37 159.8 118 69.5
Sabra07G0098300 Salix brachista HOM05D001891 ORTHO05D004048 1.2e-37 159.8 118 71.2
Thecc.02G162400 Theobroma cacao HOM05D001891 ORTHO05D004048 1.2e-37 159.8 118 66.1
TAR627G0099 Trochodendron aralioides HOM05D001891 ORTHO05D004048 1.2e-37 159.8 115 68.7
Actinidia30510 Actinidia chinensis HOM05D001891 ORTHO05D004048 1.6e-37 159.5 115 67.0
Potri.007G121600 Populus trichocarpa HOM05D001891 ORTHO05D004048 1.6e-37 159.5 118 70.3
Actinidia12501 Actinidia chinensis HOM05D001891 ORTHO05D004048 2.1e-37 159.1 118 67.8
CiPaw.04G117900 Carya illinoinensis HOM05D001891 ORTHO05D004048 2.1e-37 159.1 118 68.6
CSS0049956 Camellia sinensis var. sinensis HOM05D001891 ORTHO05D004048 2.8e-37 158.7 118 65.3
Glyma.12G195800 Glycine max HOM05D001891 ORTHO05D004048 2.8e-37 158.7 118 67.8
Gohir.A03G163600 Gossypium hirsutum HOM05D001891 ORTHO05D004048 2.8e-37 158.7 118 66.9
Gohir.D02G187000 Gossypium hirsutum HOM05D001891 ORTHO05D004048 2.8e-37 158.7 118 66.9
Gorai.005G209300 Gossypium raimondii HOM05D001891 ORTHO05D004048 2.8e-37 158.7 118 66.9
Lj3g0010899 Lotus japonicus HOM05D001891 ORTHO05D004048 2.8e-37 158.7 116 69.8
Potri.017G038800 Populus trichocarpa HOM05D001891 ORTHO05D004048 2.8e-37 158.7 116 69.8
Cc05_g05140 Coffea canephora HOM05D001891 ORTHO05D004048 3.6e-37 158.3 118 67.8
BcaC05g28120 Brassica carinata HOM05D001891 ORTHO05D004048 4.7e-37 157.9 116 69.8
CAN.G80.19 Capsicum annuum HOM05D001891 ORTHO05D004048 4.7e-37 157.9 118 66.1
Migut.M00394 Erythranthe guttata HOM05D001891 ORTHO05D004048 4.7e-37 157.9 118 64.4
Prupe.3G220500 Prunus persica HOM05D001891 ORTHO05D004048 4.7e-37 157.9 118 66.9
Sabra17G0025800 Salix brachista HOM05D001891 ORTHO05D004048 4.7e-37 157.9 116 68.1
Sc12g0002390 Simmondsia chinensis HOM05D001891 ORTHO05D004048 4.7e-37 157.9 118 66.1
Lj3g0025447 Lotus japonicus HOM05D001891 ORTHO05D004048 6.2e-37 157.5 118 67.8
Sed0022558 Sechium edule HOM05D001891 ORTHO05D004048 6.2e-37 157.5 118 67.8
Solyc07g052600.3 Solanum lycopersicum HOM05D001891 ORTHO05D004048 6.2e-37 157.5 118 67.8
Sopen07g026210 Solanum pennellii HOM05D001891 ORTHO05D004048 6.2e-37 157.5 118 67.8
TAR629G3333 Trochodendron aralioides HOM05D001891 ORTHO05D004048 6.2e-37 157.5 115 68.7
CANSAT64G0421 Cannabis sativa HOM05D001891 ORTHO05D004048 8.1e-37 157.1 118 67.8
MD09G1105000 Malus domestica HOM05D001891 ORTHO05D004048 8.1e-37 157.1 118 66.1
BcaB04g19187 Brassica carinata HOM05D001891 ORTHO05D004048 1.1e-36 156.8 115 68.7
A05p26910 Brassica napus HOM05D001891 ORTHO05D004048 1.1e-36 156.8 116 69.0
BraA05t21571Z Brassica rapa HOM05D001891 ORTHO05D004048 1.1e-36 156.8 116 69.0
TWI75G1691 Tripterygium wilfordii HOM05D001891 ORTHO05D004048 1.1e-36 156.8 118 67.8
CARHR097820 Cardamine hirsuta HOM05D001891 ORTHO05D004048 1.4e-36 156.4 116 68.1
Thhalv10021287m.g Eutrema salsugineum HOM05D001891 ORTHO05D004048 1.4e-36 156.4 115 68.7
Lj1A756G86 Lonicera japonica HOM05D001891 ORTHO05D004048 1.4e-36 156.4 115 65.2
MD17G1092700 Malus domestica HOM05D001891 ORTHO05D004048 1.4e-36 156.4 118 66.1
MSTRG.12288 Avicennia marina HOM05D001891 ORTHO05D004048 1.8e-36 156.0 118 65.3
BcaB06g26288 Brassica carinata HOM05D001891 ORTHO05D004048 1.8e-36 156.0 118 66.9
C05p41520 Brassica napus HOM05D001891 ORTHO05D004048 1.8e-36 156.0 116 69.0
BolC5t32890H Brassica oleracea HOM05D001891 ORTHO05D004048 1.8e-36 156.0 116 69.0
CiPaw.03G163000 Carya illinoinensis HOM05D001891 ORTHO05D004048 1.8e-36 156.0 118 66.1
FvH4_6g43550 Fragaria vesca HOM05D001891 ORTHO05D004048 1.8e-36 156.0 118 66.1
Solyc12g005760.2 Solanum lycopersicum HOM05D001891 ORTHO05D004048 1.8e-36 156.0 116 67.2
BraA03t13403Z Brassica rapa HOM05D001891 ORTHO05D004048 2.3e-36 155.6 115 67.8
RcHm_v2.0_Chr2g0160081 Rosa chinensis HOM05D001891 ORTHO05D004048 2.3e-36 155.6 118 66.1
Sopen12g001680 Solanum pennellii HOM05D001891 ORTHO05D004048 3.1e-36 155.2 116 66.4
Lj8A122T60 Lonicera japonica HOM05D001891 ORTHO05D004048 4.0e-36 154.8 115 66.1
Ca_27743_v3 Cicer arietinum L. HOM05D001891 ORTHO05D004048 5.2e-36 154.5 118 66.9
BcaC01g03476 Brassica carinata HOM05D001891 ORTHO05D004048 6.8e-36 154.1 115 67.0
C03p52060 Brassica napus HOM05D001891 ORTHO05D004048 6.8e-36 154.1 115 67.0
BolC3t17487H Brassica oleracea HOM05D001891 ORTHO05D004048 6.8e-36 154.1 115 67.0
A03p42500 Brassica napus HOM05D001891 ORTHO05D004048 8.9e-36 153.7 115 67.0
C01p42350 Brassica napus HOM05D001891 ORTHO05D004048 8.9e-36 153.7 118 65.3
Nitab4.5_0005894g0030 Nicotiana tabacum HOM05D001891 ORTHO05D009433 8.9e-36 153.7 116 68.1
Oeu041959.1 Olea europaea HOM05D001891 ORTHO05D004048 8.9e-36 153.7 116 65.5
Rhsim04G0056600 Rhododendron simsii HOM05D001891 ORTHO05D004048 8.9e-36 153.7 118 64.4
TPR.G4167 Trifolium pratense HOM05D001891 ORTHO05D004048 8.9e-36 153.7 118 66.1
FAN09G3447 Fragaria x ananassa HOM05D001891 ORTHO05D004048 1.2e-35 153.3 118 65.3
A01p33120 Brassica napus HOM05D001891 ORTHO05D004048 1.5e-35 152.9 115 66.1
BraA01t03435Z Brassica rapa HOM05D001891 ORTHO05D004048 1.5e-35 152.9 115 66.1
Hma1.2p1_0613F.1_g189170 Hydrangea macrophylla HOM05D001891 ORTHO05D004048 1.5e-35 152.9 118 65.3
SalBow1G3276 Salvia bowleyana HOM05D001891 ORTHO05D004048 1.5e-35 152.9 118 66.1
Sed0013568 Sechium edule HOM05D001891 ORTHO05D004048 1.5e-35 152.9 118 64.4
BcaC09g49122 Brassica carinata HOM05D001891 ORTHO05D004048 2.0e-35 152.5 115 66.1
BolC1t04190H Brassica oleracea HOM05D001891 ORTHO05D004048 2.0e-35 152.5 115 66.1
AUR62037141 Chenopodium quinoa HOM05D001891 ORTHO05D004048 2.0e-35 152.5 118 64.4
Aa31LG9G2160 Aethionema arabicum HOM05D001891 ORTHO05D004048 2.6e-35 152.1 118 66.1
THA.LOC104802537 Tarenaya hassleriana HOM05D001891 ORTHO05D004048 2.6e-35 152.1 119 66.4
vmacro12228 Vaccinium macrocarpon HOM05D001891 ORTHO05D004048 2.6e-35 152.1 118 63.6
BcaC09g49129 Brassica carinata HOM05D001891 ORTHO05D004048 3.4e-35 151.8 115 67.0
unitig_578.g16774 Utricularia gibba HOM05D001891 ORTHO05D004048 3.4e-35 151.8 117 64.1
Medtr2g088850 Medicago truncatula HOM05D001891 ORTHO05D004048 4.4e-35 151.4 116 64.7
Zm00001eb431430 Zea mays HOM05D001891 ORTHO05D004048 4.4e-35 151.4 117 63.2
Carub.0003s2193 Capsella rubella HOM05D001891 ORTHO05D004048 7.6e-35 150.6 118 64.4
Gohir.A12G134800 Gossypium hirsutum HOM05D001891 ORTHO05D004048 9.9e-35 150.2 115 64.3
Os04g0629000 Oryza sativa ssp. japonica HOM05D001891 ORTHO05D004048 1.3e-34 149.8 117 62.4
unitig_21.g20003 Utricularia gibba HOM05D001891 ORTHO05D004048 1.3e-34 149.8 117 63.2
Zm00001eb069570 Zea mays HOM05D001891 ORTHO05D004048 1.3e-34 149.8 117 62.4
Sp3g19830 Schrenkiella parvula HOM05D001891 ORTHO05D004048 1.7e-34 149.4 115 66.1
Dinv39686 Davidia involucrata HOM05D001891 ORTHO05D004048 2.9e-34 148.7 115 66.1
Gohir.D12G138400 Gossypium hirsutum HOM05D001891 ORTHO05D004048 2.9e-34 148.7 115 63.5
Gorai.008G149900 Gossypium raimondii HOM05D001891 ORTHO05D004048 2.9e-34 148.7 115 63.5
DCAR_019211 Daucus carota HOM05D001891 ORTHO05D004048 3.8e-34 148.3 118 61.9
AL3G36020 Arabidopsis lyrata HOM05D001891 ORTHO05D004048 4.9e-34 147.9 138 58.7
Psat5g265320 Pisum sativum HOM05D001891 ORTHO05D004048 4.9e-34 147.9 116 64.7
FAN14G5299 Fragaria x ananassa HOM05D001891 ORTHO05D005832 6.4e-34 147.5 112 66.1
arahy.Tifrunner.gnm1.ann1.CI1LQF Arachis hypogaea HOM05D001891 ORTHO05D004048 1.1e-33 146.7 109 67.9
arahy.Tifrunner.gnm1.ann1.NX9XDZ Arachis hypogaea HOM05D001891 ORTHO05D004048 1.1e-33 146.7 109 67.9
ClCG02G001770 Citrullus lanatus HOM05D001891 ORTHO05D004048 2.4e-33 145.6 114 64.0
BcaC09g49125 Brassica carinata HOM05D001891 ORTHO05D004048 3.2e-33 145.2 115 66.1
BcaC09g49127 Brassica carinata HOM05D001891 ORTHO05D004048 3.2e-33 145.2 115 66.1
Aqoxy4G02095 Aquilegia oxysepala HOM05D001891 ORTHO05D004048 4.1e-33 144.8 142 54.2
Sed0020603 Sechium edule HOM05D001891 ORTHO05D004048 4.1e-33 144.8 114 63.2
SGA_v2.0_scaffold70G23420 Striga asiatica HOM05D001891 ORTHO05D004048 4.1e-33 144.8 132 57.6
MSTRG.14154 Avicennia marina HOM05D001891 ORTHO05D004048 5.4e-33 144.4 118 62.7
MELO3C018802.2 Cucumis melo HOM05D001891 ORTHO05D004048 5.4e-33 144.4 114 64.0
Ah.01g014600 Amaranthus hybridus HOM05D001891 ORTHO05D004048 7.1e-33 144.1 118 63.6
Nitab4.5_0001176g0130 Nicotiana tabacum HOM05D001891 ORTHO05D009433 1.2e-32 143.3 111 66.7
PGR142G0845 Punica granatum HOM05D001891 ORTHO05D004048 2.1e-32 142.5 118 61.9
Aqoxy4G02099 Aquilegia oxysepala HOM05D001891 ORTHO05D004048 2.7e-32 142.1 117 60.7
SalBow7G2009 Salvia bowleyana HOM05D001891 ORTHO05D004048 2.7e-32 142.1 114 64.0
SGA_v2.0_scaffold49G18333 Striga asiatica HOM05D001891 ORTHO05D004048 4.6e-32 141.4 125 58.4
EL10Ac9g20654 Beta vulgaris HOM05D001891 ORTHO05D004048 6.0e-32 141.0 148 52.7
Lsat_1_v5_gn_3_43721 Lactuca sativa HOM05D001891 ORTHO05D004048 1.0e-31 140.2 118 59.3
Lsat_1_v5_gn_4_69321 Lactuca sativa HOM05D001891 ORTHO05D004048 1.0e-31 140.2 115 61.7
HanXRQChr10g0297471 Helianthus annuus HOM05D001891 ORTHO05D004048 1.7e-31 139.4 115 61.7
HanXRQChr15g0479201 Helianthus annuus HOM05D001891 ORTHO05D004048 1.7e-31 139.4 114 62.3
Lsat_1_v5_gn_8_129400 Lactuca sativa HOM05D001891 ORTHO05D004048 1.7e-31 139.4 114 62.3
DCAR_012959 Daucus carota HOM05D001891 ORTHO05D004048 3.0e-31 138.7 118 58.5
PSO541G4560 Papaver somniferum HOM05D001891 ORTHO05D004048 8.6e-31 137.1 115 58.3
PSO675G1171 Papaver somniferum HOM05D001891 ORTHO05D004048 8.6e-31 137.1 115 58.3
Oeu052538.1 Olea europaea HOM05D001891 ORTHO05D004048 1.1e-30 136.7 109 60.6
ATR0618G228 Amborella trichopoda HOM05D001891 ORTHO05D004048 1.9e-30 136.0 114 60.5
ECA233G3416 Erigeron canadensis HOM05D000014 ORTHO05D000093 1.9e-30 136.0 114 60.5
HanXRQChr17g0560941 Helianthus annuus HOM05D001891 ORTHO05D004048 2.5e-30 135.6 114 58.8
Nitab4.5_0006207g0030 Nicotiana tabacum HOM05D001891 ORTHO05D004048 2.5e-30 135.6 123 59.3
Nitab4.5_0000631g0040 Nicotiana tabacum HOM05D001891 ORTHO05D004048 3.6e-29 131.7 111 61.3
TAR629G0018 Trochodendron aralioides HOM05D001891 ORTHO05D004048 6.2e-29 131.0 114 56.1
Atru.chr6.3149 Acer truncatum HOM05D001891 ORTHO05D004048 1.4e-28 129.8 97 68.0
Cpa.g.sc8.236 Carica papaya HOM05D001891 ORTHO05D004048 1.4e-28 129.8 95 70.5
MBI06_g15670_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D004048 3.1e-28 128.6 117 54.7
HPP92_004139 Vanilla planifolia HOM05D001891 ORTHO05D004048 6.9e-28 127.5 115 55.7
Hund01141 Selenicereus undatus HOM05D001891 ORTHO05D004048 1.5e-27 126.3 132 53.8
SEGI_12996 Sequoiadendron giganteum HOM05D001891 ORTHO05D004048 2.0e-27 125.9 115 56.5
CDE07G1567 Ceratophyllum demersum HOM05D001891 ORTHO05D004048 5.8e-27 124.4 117 54.7
Oeu011080.1 Olea europaea HOM05D001891 ORTHO05D004048 1.7e-26 122.9 69 82.6
QL03p043045 Quercus lobata HOM05D001891 ORTHO05D004048 2.2e-26 122.5 115 53.0
Lalb_Chr14g0375711 Lupinus albus HOM05D001891 ORTHO05D004048 2.9e-26 122.1 105 56.2
CDE04G1330 Ceratophyllum demersum HOM05D001891 ORTHO05D004048 8.4e-26 120.6 117 53.8
COL.COLO4_12984 Corchorus olitorius HOM05D001891 ORTHO05D005832 8.4e-26 120.6 76 75.0
Actinidia00164 Actinidia chinensis HOM05D001891 ORTHO05D004048 1.9e-25 119.4 115 50.4
Migut.H01220 Erythranthe guttata HOM05D001891 ORTHO05D004048 1.9e-25 119.4 73 74.0
FAN02G0497 Fragaria x ananassa HOM05D001891 ORTHO05D005832 3.2e-25 118.6 66 81.8
Peaxi162Scf00007g01230 Petunia axillaris HOM05D001891 ORTHO05D004048 4.2e-25 118.2 81 72.8
HPP92_009055 Vanilla planifolia HOM05D001891 ORTHO05D004048 3.5e-24 115.2 118 51.7
Mapoly0037s0074 Marchantia polymorpha HOM05D001891 ORTHO05D004048 6.0e-24 114.4 115 52.2
PSO063G3135 Papaver somniferum HOM05D001891 ORTHO05D004048 6.0e-24 114.4 113 47.8
Lj3A852T54 Lonicera japonica HOM05D001891 ORTHO05D004048 1.1e-22 110.2 70 72.9
QL08p033836 Quercus lobata HOM05D001891 ORTHO05D004048 1.1e-22 110.2 86 61.6
Dinv02385 Davidia involucrata HOM05D001891 ORTHO05D004048 3.3e-22 108.6 79 62.0
Zm00001eb066610 Zea mays HOM05D001891 ORTHO05D004048 3.3e-22 108.6 114 50.0
Os04g0672800 Oryza sativa ssp. japonica HOM05D001891 ORTHO05D004048 5.6e-22 107.8 114 52.6
vmacro09324 Vaccinium macrocarpon HOM05D001891 ORTHO05D004048 5.6e-22 107.8 75 66.7
Atru.chr8.691 Acer truncatum HOM05D001891 ORTHO05D004048 1.3e-21 106.7 86 62.8
Sabra11G0073000 Salix brachista HOM05D001891 ORTHO05D004048 4.8e-21 104.8 87 64.4
Ah.01g003690 Amaranthus hybridus HOM05D001891 ORTHO05D004048 1.8e-20 102.8 89 59.6
Pp3c3_16800 Physcomitrium patens HOM05D001891 ORTHO05D004048 2.0e-19 99.4 112 46.4
Pp3c3_16810 Physcomitrium patens HOM05D001891 ORTHO05D004048 2.0e-19 99.4 112 46.4
MBI03_g22259_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D004048 4.9e-18 94.7 61 70.5
AagrBONN_evm.TU.Sc2ySwM_362.2694 Anthoceros agrestis HOM05D001891 ORTHO05D004048 1.9e-17 92.8 66 63.6
SMO356G0403 Selaginella moellendorffii HOM05D001891 ORTHO05D004048 3.5e-16 88.6 114 41.2
SEGI_18250 Sequoiadendron giganteum HOM05D001891 ORTHO05D004048 1.0e-15 87.0 88 51.1
Sabra08G0110200 Salix brachista HOM05D001891 ORTHO05D004048 1.1e-14 83.6 160 35.0
Duzib052G0734 Durio zibethinus HOM05D001891 ORTHO05D004048 7.9e-08 60.8 139 33.1
Dinv18531 Davidia involucrata HOM05D001891 ORTHO05D004048 6.7e-07 57.8 33 84.8
AUR62025059 Chenopodium quinoa HOM05D001891 ORTHO05D004048 1.5e-06 56.6 35 71.4


User provided reference genes

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