Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K00819 Eucalyptus grandis HOM05D001891 ORTHO05D005832 1.1e-234 816.2 399 100.0
Eucgr.K00860 Eucalyptus grandis HOM05D001891 ORTHO05D005832 6.2e-198 694.1 437 81.5
Eucgr.K00822 Eucalyptus grandis HOM05D001891 ORTHO05D005832 1.6e-193 679.5 437 80.1
Eucgr.K00839 Eucalyptus grandis HOM05D001891 ORTHO05D005832 1.0e-176 623.6 399 78.9
PGR142G2396 Punica granatum HOM05D001891 ORTHO05D005832 2.6e-148 529.3 433 62.1
Cfa014439 Carpinus fangiana HOM05D001891 ORTHO05D005832 4.7e-145 518.5 436 60.3
Dinv39687 Davidia involucrata HOM05D001891 ORTHO05D005832 6.7e-144 514.6 439 60.4
CSS0020073 Camellia sinensis var. sinensis HOM05D001891 ORTHO05D005832 4.4e-143 511.9 434 61.3
MD09G1105100 Malus domestica HOM05D001891 ORTHO05D005832 3.7e-142 508.8 433 59.4
Haze_12897 Corylus avellana HOM05D001891 ORTHO05D005832 8.2e-142 507.7 443 58.5
Prupe.3G220400 Prunus persica HOM05D001891 ORTHO05D005832 7.0e-141 504.6 433 60.7
arahy.Tifrunner.gnm1.ann1.XAPR04 Arachis hypogaea HOM05D001891 ORTHO05D005832 5.9e-140 501.5 435 59.8
Thecc.02G162300 Theobroma cacao HOM05D001891 ORTHO05D005832 1.5e-138 496.9 434 58.5
CiPaw.03G162900 Carya illinoinensis HOM05D001891 ORTHO05D005832 1.9e-138 496.5 436 58.0
CsaV3_2G035180 Cucumis sativus L. HOM05D001891 ORTHO05D005832 3.2e-138 495.7 436 58.0
arahy.Tifrunner.gnm1.ann1.IG5XIH Arachis hypogaea HOM05D001891 ORTHO05D005832 7.2e-138 494.6 435 59.3
Eucgr.K00818 Eucalyptus grandis HOM05D001891 ORTHO05D005832 9.4e-138 494.2 425 65.6
Ciclev10015025m.g Citrus clementina HOM05D001891 ORTHO05D005832 2.1e-137 493.0 434 59.9
Nn1g03668 Nelumbo nucifera HOM05D001891 ORTHO05D005832 8.0e-137 491.1 435 58.6
vmacro12227 Vaccinium macrocarpon HOM05D001891 ORTHO05D005832 8.0e-137 491.1 436 58.0
RcHm_v2.0_Chr2g0160071 Rosa chinensis HOM05D001891 ORTHO05D005832 1.0e-136 490.7 432 58.8
Phvul.005G113700 Phaseolus vulgaris HOM05D001891 ORTHO05D005832 1.4e-136 490.3 435 58.4
TPR.G4158 Trifolium pratense HOM05D001891 ORTHO05D005832 1.2e-135 487.3 435 58.4
TAR624G1196 Trochodendron aralioides HOM05D001891 ORTHO05D005832 2.0e-135 486.5 436 58.7
Solyc07g052570.4 Solanum lycopersicum HOM05D001891 ORTHO05D005832 9.8e-135 484.2 435 57.7
FAN05G1073 Fragaria x ananassa HOM05D001891 ORTHO05D005832 1.3e-134 483.8 423 59.6
VMungo1080G1248 Vigna mungo HOM05D001891 ORTHO05D005832 2.2e-134 483.0 435 58.2
FAN09G1075 Fragaria x ananassa HOM05D001891 ORTHO05D005832 3.7e-134 482.3 433 58.0
Psat5g265280 Pisum sativum HOM05D001891 ORTHO05D005832 3.7e-134 482.3 435 57.5
Lalb_Chr24g0393071 Lupinus albus HOM05D001891 ORTHO05D005832 6.3e-134 481.5 432 56.5
Duzib052G0092 Durio zibethinus HOM05D001891 ORTHO05D005832 8.3e-134 481.1 434 56.7
FAN02G0497 Fragaria x ananassa HOM05D001891 ORTHO05D005832 8.3e-134 481.1 433 57.5
Medtr2g088820 Medicago truncatula HOM05D001891 ORTHO05D005832 1.8e-133 479.9 435 56.8
THA.LOC104821752 Tarenaya hassleriana HOM05D001891 ORTHO05D005832 1.8e-133 479.9 432 58.3
Glyma.12G195700 Glycine max HOM05D001891 ORTHO05D005832 1.2e-132 477.2 435 58.9
PSO541G2722 Papaver somniferum HOM05D001891 ORTHO05D005832 1.2e-132 477.2 435 55.4
Nitab4.5_0001176g0150 Nicotiana tabacum HOM05D001891 ORTHO05D005832 2.7e-132 476.1 434 56.0
Oeu041941.2 Olea europaea HOM05D001891 ORTHO05D005832 4.5e-132 475.3 435 56.3
TWI18G0733 Tripterygium wilfordii HOM05D001891 ORTHO05D005832 7.7e-132 474.6 435 56.8
MELO3C019236.2 Cucumis melo HOM05D001891 ORTHO05D005832 1.0e-131 474.2 402 59.0
Lj3g0012140 Lotus japonicus HOM05D001891 ORTHO05D005832 1.0e-131 474.2 435 56.6
Sopen07g026180 Solanum pennellii HOM05D001891 ORTHO05D005832 1.0e-131 474.2 452 55.5
Potri.017G038700 Populus trichocarpa HOM05D001891 ORTHO05D005832 1.7e-131 473.4 423 57.2
CAN.G921.8 Capsicum annuum HOM05D001891 ORTHO05D005832 3.8e-131 472.2 434 56.0
Gorai.002G016300 Gossypium raimondii HOM05D001891 ORTHO05D005832 2.5e-130 469.5 435 56.3
Aqoxy4G02100 Aquilegia oxysepala HOM05D001891 ORTHO05D005832 3.2e-130 469.2 435 56.8
Manes.13G073100 Manihot esculenta HOM05D001891 ORTHO05D005832 3.2e-130 469.2 435 56.3
GSVIVG01030624001 Vitis vinifera HOM05D001891 ORTHO05D005832 4.2e-130 468.8 435 57.0
Gohir.A01G013300 Gossypium hirsutum HOM05D001891 ORTHO05D005832 7.2e-130 468.0 435 56.3
Migut.M00395 Erythranthe guttata HOM05D001891 ORTHO05D005832 1.6e-129 466.8 430 56.5
Gohir.D01G014600 Gossypium hirsutum HOM05D001891 ORTHO05D005832 1.0e-128 464.2 435 56.1
Carub.0003s2190 Capsella rubella HOM05D001891 ORTHO05D005832 1.4e-128 463.8 430 57.0
Peaxi162Scf00007g01229 Petunia axillaris HOM05D001891 ORTHO05D005832 1.8e-128 463.4 425 56.7
QL08p033823 Quercus lobata HOM05D001891 ORTHO05D005832 3.0e-128 462.6 510 50.2
Thhalv10020639m.g Eutrema salsugineum HOM05D001891 ORTHO05D005832 4.0e-128 462.2 430 56.5
Sp3g19820 Schrenkiella parvula HOM05D001891 ORTHO05D005832 4.0e-128 462.2 430 56.5
AL3G35970 Arabidopsis lyrata HOM05D001891 ORTHO05D005832 8.8e-128 461.1 430 56.5
CANSAT64G2761 Cannabis sativa HOM05D001891 ORTHO05D005832 8.8e-128 461.1 435 57.0
Cc05_g05050 Coffea canephora HOM05D001891 ORTHO05D005832 4.4e-127 458.8 437 55.6
Rhsim06G0158100 Rhododendron simsii HOM05D001891 ORTHO05D005832 7.5e-127 458.0 437 56.5
AT3G21820 Arabidopsis thaliana HOM05D001891 ORTHO05D005832 1.7e-126 456.8 430 56.0
Aa31LG8G8410 Aethionema arabicum HOM05D001891 ORTHO05D005832 2.8e-126 456.1 430 57.0
A05p26920 Brassica napus HOM05D001891 ORTHO05D005832 4.9e-126 455.3 430 56.7
C05p41560 Brassica napus HOM05D001891 ORTHO05D005832 4.9e-126 455.3 430 56.5
BolC5t32893H Brassica oleracea HOM05D001891 ORTHO05D005832 4.9e-126 455.3 430 56.5
BraA05t21572Z Brassica rapa HOM05D001891 ORTHO05D005832 4.9e-126 455.3 430 56.7
Actinidia12502 Actinidia chinensis HOM05D001891 ORTHO05D005832 1.1e-125 454.1 456 53.9
EL10Ac7g17313 Beta vulgaris HOM05D001891 ORTHO05D005832 4.5e-124 448.7 434 56.2
BcaC05g28122 Brassica carinata HOM05D001891 ORTHO05D005832 4.5e-124 448.7 430 55.3
Ah.15g093450 Amaranthus hybridus HOM05D001891 ORTHO05D005832 1.0e-123 447.6 435 53.6
SalBow7G4184 Salvia bowleyana HOM05D001891 ORTHO05D005832 1.0e-123 447.6 436 54.4
FAN14G5299 Fragaria x ananassa HOM05D001891 ORTHO05D005832 4.2e-122 442.2 415 56.6
ECA238G0562 Erigeron canadensis HOM05D001891 ORTHO05D005832 1.2e-121 440.7 439 54.0
MBI18_g23508_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 1.2e-121 440.7 435 54.3
ClCG02G008450 Citrullus lanatus HOM05D001891 ORTHO05D005832 2.1e-121 439.9 410 56.6
unitig_26.g9659 Utricularia gibba HOM05D001891 ORTHO05D005832 4.7e-121 438.7 436 53.2
CARHR097810 Cardamine hirsuta HOM05D001891 ORTHO05D005832 1.4e-120 437.2 430 54.4
MBI18_g19140_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 1.4e-120 437.2 409 55.5
Zm00001eb069580 Zea mays HOM05D001891 ORTHO05D005832 4.0e-120 435.6 425 53.9
Sabra17G0025700 Salix brachista HOM05D001891 ORTHO05D005832 6.8e-120 434.9 416 55.8
COL.COLO4_12984 Corchorus olitorius HOM05D001891 ORTHO05D005832 8.9e-120 434.5 434 53.2
BcaB06g26287 Brassica carinata HOM05D001891 ORTHO05D005832 1.8e-117 426.8 430 52.8
Cpa.g.sc8.235 Carica papaya HOM05D001891 ORTHO05D005832 2.4e-117 426.4 419 54.2
Sed0014701 Sechium edule HOM05D001891 ORTHO05D005832 7.0e-117 424.9 372 57.8
HanXRQChr10g0297501 Helianthus annuus HOM05D001891 ORTHO05D005832 1.1e-114 417.5 436 51.8
Os04g0629100 Oryza sativa ssp. japonica HOM05D001891 ORTHO05D005832 9.5e-114 414.5 428 51.2
Hund01107 Selenicereus undatus HOM05D001891 ORTHO05D005832 2.7e-108 396.4 387 55.0
Atru.chr6.3148 Acer truncatum HOM05D001891 ORTHO05D005832 3.1e-104 382.9 359 55.2
Aqoxy4G02096 Aquilegia oxysepala HOM05D001891 ORTHO05D005832 3.4e-103 379.4 325 58.8
Mapoly0057s0093 Marchantia polymorpha HOM05D001891 ORTHO05D005832 7.1e-101 371.7 434 46.5
FvH4_6g43540 Fragaria vesca HOM05D001891 ORTHO05D005832 2.1e-100 370.2 303 61.4
Lj8A122T61 Lonicera japonica HOM05D001891 ORTHO05D005832 6.6e-99 365.2 310 61.0
Pp3c13_21910 Physcomitrium patens HOM05D001891 ORTHO05D005832 1.1e-90 337.8 430 44.7
ATR0804G013 Amborella trichopoda HOM05D001891 ORTHO05D005832 1.2e-89 334.3 358 49.7
SGA_v2.0_scaffold70G23419 Striga asiatica HOM05D001891 ORTHO05D005832 4.7e-89 332.4 435 43.4
CDE01G0775 Ceratophyllum demersum HOM05D001891 ORTHO05D005832 3.4e-87 326.2 436 41.7
HPP92_009396 Vanilla planifolia HOM05D001891 ORTHO05D005832 7.6e-87 325.1 363 48.5
Eucgr.K00824 Eucalyptus grandis HOM05D001891 ORTHO05D005832 8.4e-86 321.6 366 53.8
SMO347G0022 Selaginella moellendorffii HOM05D001891 ORTHO05D005832 3.4e-79 299.7 441 41.0
DCAR_012956 Daucus carota HOM05D001891 ORTHO05D005832 3.9e-75 286.2 219 65.3
Glyma.13G306800 Glycine max HOM05D001891 ORTHO05D005832 2.8e-73 280.0 273 53.5
Psat6g077080 Pisum sativum HOM05D001891 ORTHO05D005832 4.8e-73 279.3 309 51.1
Psat6g077120 Pisum sativum HOM05D001891 ORTHO05D005832 4.8e-73 279.3 309 51.1
AL3G35980 Arabidopsis lyrata HOM05D001891 ORTHO05D005832 5.5e-69 265.8 283 51.6
MBI18_g07895_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 5.3e-64 249.2 296 47.0
Sc12g0002380 Simmondsia chinensis HOM05D001891 ORTHO05D005832 1.9e-58 230.7 258 48.8
AUR62040522 Chenopodium quinoa HOM05D001891 ORTHO05D005832 4.3e-58 229.6 260 47.7
HPP92_009391 Vanilla planifolia HOM05D001891 ORTHO05D005832 4.8e-57 226.1 300 45.0
MBI18_g41217_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 1.4e-56 224.6 178 64.0
PGSC0003DMG400026174 Solanum tuberosum HOM05D001891 ORTHO05D005832 1.4e-56 224.6 156 68.6
MCO06G294 Micromonas commoda HOM05D001891 ORTHO05D005832 2.0e-55 220.7 439 33.7
SMO167G0005 Selaginella moellendorffii HOM05D001891 ORTHO05D005832 2.9e-54 216.9 303 43.2
Cre01.g041100 Chlamydomonas reinhardtii HOM05D001891 ORTHO05D005832 6.1e-52 209.1 508 32.3
Eucgr.K00821 Eucalyptus grandis HOM05D001891 ORTHO05D005832 6.7e-51 205.7 141 75.2
Psat0s4720g0040 Pisum sativum HOM05D001891 ORTHO05D005832 1.5e-47 194.5 151 60.9
DCAR_012957 Daucus carota HOM05D001891 ORTHO05D005832 2.2e-46 190.7 184 53.3
Nitab4.5_0005894g0040 Nicotiana tabacum HOM05D001891 ORTHO05D005832 5.5e-45 186.0 303 39.6
Atru.chr8.690 Acer truncatum HOM05D001891 ORTHO05D005832 1.4e-43 181.4 124 70.2
SEGI_20287 Sequoiadendron giganteum HOM05D001891 ORTHO05D005832 3.3e-42 176.8 162 53.1
arahy.Tifrunner.gnm1.ann1.R1IBZY Arachis hypogaea HOM05D001891 ORTHO05D005832 3.7e-33 146.7 107 65.4
arahy.Tifrunner.gnm1.ann1.2VZW82 Arachis hypogaea HOM05D001891 ORTHO05D005832 4.8e-33 146.4 126 56.3
arahy.Tifrunner.gnm1.ann1.62D34N Arachis hypogaea HOM05D001891 ORTHO05D005832 1.6e-28 131.3 105 60.0
arahy.Tifrunner.gnm1.ann1.I3MG1X Arachis hypogaea HOM05D001891 ORTHO05D005832 7.5e-26 122.5 105 59.0
AL5G18570 Arabidopsis lyrata HOM05D001891 ORTHO05D005832 9.7e-26 122.1 176 38.1
arahy.Tifrunner.gnm1.ann1.LNA654 Arachis hypogaea HOM05D001891 ORTHO05D005832 2.4e-24 117.5 71 70.4
arahy.Tifrunner.gnm1.ann1.I8ZYWJ Arachis hypogaea HOM05D001891 ORTHO05D005832 7.0e-24 115.9 75 68.0
MBI18_g10800_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 2.9e-22 110.5 171 40.9
MBI18_g17390_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 2.5e-21 107.5 133 42.9
Psat1g072160 Pisum sativum HOM05D002713 ORTHO05D008299 3.2e-21 107.1 121 47.9
arahy.Tifrunner.gnm1.ann1.F9GSXH Arachis hypogaea HOM05D003886 ORTHO05D019782 9.8e-18 95.5 115 46.1
ATR0008G001 Amborella trichopoda HOM05D001891 ORTHO05D005832 1.1e-16 92.0 119 44.5
Glyma.13G037950 Glycine max HOM05D001891 ORTHO05D005832 4.1e-16 90.1 145 37.9
Actinidia32078 Actinidia chinensis HOM05D001891 ORTHO05D005832 1.1e-13 82.0 75 54.7
SEGI_29039 Sequoiadendron giganteum HOM05D001891 ORTHO05D005832 5.5e-13 79.7 138 32.6
arahy.Tifrunner.gnm1.ann1.TRUR1F Arachis hypogaea HOM05D001891 ORTHO05D005832 8.0e-12 75.9 42 78.6
MBI02_g41952_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.7e-09 68.2 62 51.6
MBI18_g41692_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 2.8e-09 67.4 80 43.8
PRCOL_00001357 Prasinoderma coloniale HOM05D001891 ORTHO05D005832 2.8e-09 67.4 160 29.4
arahy.Tifrunner.gnm1.ann1.6T7UPN Arachis hypogaea HOM05D003636 ORTHO05D005832 2.4e-08 64.3 80 43.8
MBI01_g06556_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 5.4e-08 63.2 76 43.4
arahy.Tifrunner.gnm1.ann1.Q3H55W Arachis hypogaea HOM05D003444 ORTHO05D003963 2.0e-07 61.2 44 61.4
AL7G32320 Arabidopsis lyrata HOM05D001891 ORTHO05D005832 3.5e-07 60.5 61 49.2
arahy.Tifrunner.gnm1.ann1.WYE7TV Arachis hypogaea HOM05D003444 ORTHO05D003963 2.3e-06 57.8 44 56.8
arahy.Tifrunner.gnm1.ann1.FTMH30 Arachis hypogaea HOM05D001891 ORTHO05D005832 3.8e-06 57.0 54 53.7
arahy.Tifrunner.gnm1.ann1.J663RV Arachis hypogaea HOM05D002828 ORTHO05D003457 3.8e-06 57.0 44 59.1


User provided reference genes

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