Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K00402 Eucalyptus grandis HOM05D005832 ORTHO05D007117 2.2e-116 422.5 249 100.0
Oeu055193.1 Olea europaea HOM05D005832 ORTHO05D007117 2.6e-77 292.7 262 70.2
Gorai.004G199200 Gossypium raimondii HOM05D005832 ORTHO05D007117 2.7e-66 256.1 211 76.3
CSS0000669 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 4.6e-66 255.4 368 52.7
CSS0046458 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 4.6e-66 255.4 368 52.7
PGR142G2159 Punica granatum HOM05D005832 ORTHO05D007117 1.7e-65 253.4 251 68.9
Dinv29254 Davidia involucrata HOM05D005832 ORTHO05D007117 1.5e-64 250.4 249 67.5
Prupe.2G314300 Prunus persica HOM05D005832 ORTHO05D007117 7.3e-64 248.1 251 67.3
GSVIVG01038586001 Vitis vinifera HOM05D005832 ORTHO05D007117 9.6e-64 247.7 237 71.3
Haze_00239 Corylus avellana HOM05D005832 ORTHO05D007117 2.1e-63 246.5 249 68.3
Haze_00242 Corylus avellana HOM05D005832 ORTHO05D007117 3.6e-63 245.7 249 68.3
Cfa016207 Carpinus fangiana HOM05D005832 ORTHO05D007117 6.2e-63 245.0 249 68.3
Thecc.03G202400 Theobroma cacao HOM05D005832 ORTHO05D007117 1.1e-62 244.2 250 68.4
Lj3A899T66 Lonicera japonica HOM05D005832 ORTHO05D007117 2.4e-62 243.0 190 71.1
CAN.G481.39 Capsicum annuum HOM05D005832 ORTHO05D007117 4.0e-62 242.3 249 65.9
Ciclev10021983m.g Citrus clementina HOM05D005832 ORTHO05D007117 5.3e-62 241.9 251 68.5
Oeu010700.1 Olea europaea HOM05D005832 ORTHO05D007117 2.6e-61 239.6 249 66.3
Potri.012G018100 Populus trichocarpa HOM05D005832 ORTHO05D007117 7.6e-61 238.0 249 65.5
Gorai.013G219100 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.3e-60 237.3 269 54.6
CiPaw.06G044600 Carya illinoinensis HOM05D005832 ORTHO05D007117 2.2e-60 236.5 249 65.1
PGSC0003DMG400018522 Solanum tuberosum HOM05D005832 ORTHO05D007117 3.8e-60 235.7 249 65.1
QL09p007826 Quercus lobata HOM05D005832 ORTHO05D007117 6.4e-60 235.0 248 65.3
Actinidia06134 Actinidia chinensis HOM05D005832 ORTHO05D007117 1.1e-59 234.2 249 65.1
Nn3g18931 Nelumbo nucifera HOM05D005832 ORTHO05D007117 1.9e-59 233.4 249 65.1
MSTRG.8527 Avicennia marina HOM05D005832 ORTHO05D007117 2.1e-58 229.9 251 64.1
Hma1.2p1_0591F.1_g185170 Hydrangea macrophylla HOM05D005832 ORTHO05D007117 2.1e-58 229.9 249 63.1
FvH4_7g32120 Fragaria vesca HOM05D005832 ORTHO05D007117 2.7e-58 229.6 250 65.2
FAN06G2446 Fragaria x ananassa HOM05D005832 ORTHO05D007117 2.7e-58 229.6 250 65.2
RcHm_v2.0_Chr1g0381721 Rosa chinensis HOM05D005832 ORTHO05D007117 2.7e-58 229.6 249 64.3
FAN10G0265 Fragaria x ananassa HOM05D005832 ORTHO05D007117 4.6e-58 228.8 250 65.2
Sabra12G0014400 Salix brachista HOM05D005832 ORTHO05D007117 4.6e-58 228.8 239 65.3
Duzib084G1042 Durio zibethinus HOM05D005832 ORTHO05D007117 1.3e-57 227.3 249 65.1
Gohir.A09G185500 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.8e-57 226.9 249 64.3
Sopen03g022710 Solanum pennellii HOM05D005832 ORTHO05D007117 3.0e-57 226.1 249 63.5
MBI18_g01156_MAGBIO Magnolia biondii HOM05D005832 ORTHO05D007117 3.9e-57 225.7 241 65.6
TAR375G0053 Trochodendron aralioides HOM05D005832 ORTHO05D007117 3.9e-57 225.7 265 61.9
Peaxi162Scf00740g00233 Petunia axillaris HOM05D005832 ORTHO05D007117 6.7e-57 224.9 237 65.0
Solyc03g082890.3 Solanum lycopersicum HOM05D005832 ORTHO05D007117 6.7e-57 224.9 249 63.1
Manes.01G039700 Manihot esculenta HOM05D005832 ORTHO05D007117 8.7e-57 224.6 254 65.4
FAN10G0314 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.5e-56 223.8 253 64.4
TWI39G1154 Tripterygium wilfordii HOM05D005832 ORTHO05D007117 3.3e-56 222.6 249 61.8
Gohir.D07G112932 Gossypium hirsutum HOM05D005832 ORTHO05D007117 4.3e-56 222.2 211 60.7
Atru.chr12.2262 Acer truncatum HOM05D005832 ORTHO05D007117 5.6e-56 221.9 251 62.9
ClCG05G009090 Citrullus lanatus HOM05D005832 ORTHO05D007117 1.3e-55 220.7 249 63.1
CDE09G0779 Ceratophyllum demersum HOM05D005832 ORTHO05D007117 1.6e-55 220.3 229 66.4
MD07G1294700 Malus domestica HOM05D005832 ORTHO05D007117 4.8e-55 218.8 253 64.0
Nitab4.5_0007100g0060 Nicotiana tabacum HOM05D005832 ORTHO05D007117 1.4e-54 217.2 250 61.2
SGA_v2.0_scaffold125G33711 Striga asiatica HOM05D005832 ORTHO05D007117 3.1e-54 216.1 195 73.8
MELO3C019377.2 Cucumis melo HOM05D005832 ORTHO05D007117 6.9e-54 214.9 249 62.2
EL10Ac3g05248 Beta vulgaris HOM05D005832 ORTHO05D007117 9.0e-54 214.5 249 61.8
CsaV3_3G019700 Cucumis sativus L. HOM05D005832 ORTHO05D007117 9.0e-54 214.5 249 61.8
AUR62006065 Chenopodium quinoa HOM05D005832 ORTHO05D007117 1.2e-53 214.2 202 71.3
Cc02_g01260 Coffea canephora HOM05D005832 ORTHO05D007117 1.2e-53 214.2 245 64.1
Gohir.D12G019400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.5e-53 213.8 210 71.0
AUR62035562 Chenopodium quinoa HOM05D005832 ORTHO05D007117 2.0e-53 213.4 237 64.1
MD01G1223900 Malus domestica HOM05D005832 ORTHO05D007117 2.0e-53 213.4 245 63.3
ATR0680G157 Amborella trichopoda HOM05D005832 ORTHO05D007117 2.6e-53 213.0 195 71.3
SalBow2G0471 Salvia bowleyana HOM05D005832 ORTHO05D007117 3.4e-53 212.6 249 62.2
Gorai.008G019700 Gossypium raimondii HOM05D005832 ORTHO05D007117 4.5e-53 212.2 211 70.1
Gorai.006G202400 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.3e-52 210.7 251 62.2
COL.COLO4_16805 Corchorus olitorius HOM05D005832 ORTHO05D007117 3.8e-52 209.1 210 69.5
Gohir.A10G001400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.1e-51 207.6 158 71.5
Zm00001eb220820 Zea mays HOM05D005832 ORTHO05D007117 1.4e-51 207.2 220 67.7
Gohir.A05G409400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.9e-51 206.8 158 71.5
Gohir.D01G203700 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.9e-51 206.8 158 71.5
Os10g0502000 Oryza sativa ssp. japonica HOM05D005832 ORTHO05D007117 3.2e-51 206.1 238 64.7
vmacro10134 Vaccinium macrocarpon HOM05D005832 ORTHO05D007117 4.2e-51 205.7 250 60.0
Migut.F01014 Erythranthe guttata HOM05D005832 ORTHO05D007117 7.1e-51 204.9 159 68.6
Sed0026931 Sechium edule HOM05D005832 ORTHO05D007117 9.3e-51 204.5 252 61.5
Gohir.D02G154600 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.2e-50 204.1 158 70.3
HanXRQChr08g0225151 Helianthus annuus HOM05D005832 ORTHO05D007117 2.1e-50 203.4 252 61.1
Gohir.D11G247000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.7e-50 203.0 153 71.2
Gorai.007G219400 Gossypium raimondii HOM05D005832 ORTHO05D007117 2.7e-50 203.0 249 61.0
Psat5g075600 Pisum sativum HOM05D005832 ORTHO05D007117 3.5e-50 202.6 254 60.6
CANSAT21G0464 Cannabis sativa HOM05D005832 ORTHO05D007117 4.6e-50 202.2 220 63.2
unitig_578.g16672 Utricularia gibba HOM05D005832 ORTHO05D007117 1.3e-49 200.7 195 70.8
Gohir.D03G118200 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.3e-49 199.9 158 69.0
PSO170G4678 Papaver somniferum HOM05D005832 ORTHO05D007117 2.3e-49 199.9 211 66.8
Sc25g0000950 Simmondsia chinensis HOM05D005832 ORTHO05D007117 2.3e-49 199.9 224 63.4
HPP92_013004 Vanilla planifolia HOM05D005832 ORTHO05D007117 2.3e-49 199.9 226 63.3
Lsat_1_v5_gn_9_63281 Lactuca sativa HOM05D005832 ORTHO05D007117 3.9e-49 199.1 199 69.3
Gohir.A11G163501 Gossypium hirsutum HOM05D005832 ORTHO05D007117 6.7e-49 198.4 253 53.4
Medtr3g491890 Medicago truncatula HOM05D005832 ORTHO05D007117 8.7e-49 198.0 254 59.1
PSO063G3297 Papaver somniferum HOM05D005832 ORTHO05D007117 8.7e-49 198.0 250 60.4
Gorai.008G174000 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.9e-48 196.8 249 61.0
Rhsim09G0206900 Rhododendron simsii HOM05D005832 ORTHO05D007117 4.3e-48 195.7 209 65.1
Aa31LG3G9660 Aethionema arabicum HOM05D005832 ORTHO05D007117 1.6e-47 193.7 230 61.7
arahy.Tifrunner.gnm1.ann1.26JPZN Arachis hypogaea HOM05D005832 ORTHO05D007117 1.6e-47 193.7 249 59.0
arahy.Tifrunner.gnm1.ann1.082NQD Arachis hypogaea HOM05D005832 ORTHO05D007117 2.8e-47 193.0 249 59.0
Ca_16726_v3 Cicer arietinum L. HOM05D005832 ORTHO05D007117 4.8e-47 192.2 255 57.6
Gohir.A13G227280 Gossypium hirsutum HOM05D005832 ORTHO05D007117 8.2e-47 191.4 137 73.7
Lj1g0002080 Lotus japonicus HOM05D005832 ORTHO05D007117 8.2e-47 191.4 246 59.8
ECA233G1427 Erigeron canadensis HOM05D005832 ORTHO05D007117 1.4e-46 190.7 248 59.7
Phvul.009G050400 Phaseolus vulgaris HOM05D005832 ORTHO05D007117 1.8e-46 190.3 220 62.7
TPR.G33655 Trifolium pratense HOM05D005832 ORTHO05D007117 1.8e-46 190.3 208 64.9
Gohir.D12G161000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.4e-46 189.9 249 53.8
Sp6g15630 Schrenkiella parvula HOM05D005832 ORTHO05D007117 9.0e-46 188.0 231 59.7
DCAR_020339 Daucus carota HOM05D005832 ORTHO05D007117 1.2e-45 187.6 211 64.9
Thhalv10014535m.g Eutrema salsugineum HOM05D005832 ORTHO05D007117 2.0e-45 186.8 230 60.0
VMungo1309G1177 Vigna mungo HOM05D005832 ORTHO05D007117 2.0e-45 186.8 222 61.7
Glyma.04G233500 Glycine max HOM05D005832 ORTHO05D007117 2.6e-45 186.4 247 58.3
Ah.13g070460 Amaranthus hybridus HOM05D005832 ORTHO05D007117 4.5e-45 185.7 126 75.4
Glyma.06G131300 Glycine max HOM05D005832 ORTHO05D007117 2.2e-44 183.3 222 62.2
SEGI_24850 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 2.2e-44 183.3 197 64.0
CARHR266630 Cardamine hirsuta HOM05D005832 ORTHO05D007117 2.9e-44 183.0 230 58.7
BcaC04g20449 Brassica carinata HOM05D005832 ORTHO05D007117 1.1e-43 181.0 218 61.0
BolC9t57215H Brassica oleracea HOM05D005832 ORTHO05D007117 1.1e-43 181.0 218 61.0
C09p43330 Brassica napus HOM05D005832 ORTHO05D007117 2.5e-43 179.9 218 61.0
Lalb_Chr08g0240071 Lupinus albus HOM05D005832 ORTHO05D007117 7.1e-43 178.3 194 66.0
Carub.0008s1366 Capsella rubella HOM05D005832 ORTHO05D007117 9.3e-43 177.9 229 58.5
AT5G53490 Arabidopsis thaliana HOM05D005832 ORTHO05D007117 1.2e-42 177.6 224 58.5
BcaB08g35713 Brassica carinata HOM05D005832 ORTHO05D007117 2.7e-42 176.4 253 56.5
A10p10930 Brassica napus HOM05D005832 ORTHO05D007117 7.9e-42 174.9 255 56.9
BraA10t43184Z Brassica rapa HOM05D005832 ORTHO05D007117 1.0e-41 174.5 196 63.8
Gohir.D09G180400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.8e-41 173.7 249 56.2
THA.LOC104799961 Tarenaya hassleriana HOM05D005832 ORTHO05D007117 9.7e-40 167.9 232 57.3
Aqoxy6G02259 Aquilegia oxysepala HOM05D005832 ORTHO05D007117 2.4e-38 163.3 256 52.3
FAN01G1435 Fragaria x ananassa HOM05D005832 ORTHO05D007117 4.1e-38 162.5 168 69.6
FAN03G0720 Fragaria x ananassa HOM05D005832 ORTHO05D007117 6.9e-38 161.8 169 68.0
Duzib205G0233 Durio zibethinus HOM05D005832 ORTHO05D007117 5.9e-37 158.7 251 55.4
Pp3c23_22190 Physcomitrium patens HOM05D005832 ORTHO05D007117 2.2e-36 156.8 211 53.6
AL8G28210 Arabidopsis lyrata HOM05D005832 ORTHO05D007117 3.8e-36 156.0 177 64.4
Gorai.004G257600 Gossypium raimondii HOM05D005832 ORTHO05D007117 6.5e-36 155.2 81 93.8
AagrBONN_evm.TU.Sc2ySwM_228.2510 Anthoceros agrestis HOM05D005832 ORTHO05D007117 7.2e-35 151.8 108 69.4
CBR_g40818 Chara braunii HOM05D005832 ORTHO05D007117 3.6e-34 149.4 111 67.6
SMO111G0094 Selaginella moellendorffii HOM05D005832 ORTHO05D007117 3.4e-29 132.9 78 80.8
Mapoly0014s0126 Marchantia polymorpha HOM05D005832 ORTHO05D007117 1.1e-27 127.9 255 42.0
SEGI_05976 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 4.5e-21 105.9 66 74.2
Cre09.g404000 Chlamydomonas reinhardtii HOM05D005832 ORTHO05D007117 7.4e-16 88.6 238 34.5
Actinidia18663 Actinidia chinensis HOM05D005832 ORTHO05D007117 3.8e-12 76.3 127 56.7
Cpa.g.sc3.109 Carica papaya HOM05D005832 ORTHO05D007117 1.0e-09 68.2 81 51.9
FAN01G3091 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.3e-07 61.2 98 46.9


User provided reference genes

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