Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K00106 Eucalyptus grandis HOM05D004953 ORTHO05D006193 0.0e+00 1853.6 948 100.0
COL.COLO4_34276 Corchorus olitorius HOM05D004953 ORTHO05D006193 0.0e+00 1237.2 955 65.9
Thecc.01G207300 Theobroma cacao HOM05D004953 ORTHO05D006193 0.0e+00 1230.3 954 65.9
Duzib133G0915 Durio zibethinus HOM05D004953 ORTHO05D006193 0.0e+00 1222.2 953 64.7
RcHm_v2.0_Chr6g0282191 Rosa chinensis HOM05D004953 ORTHO05D006193 0.0e+00 1221.1 951 65.6
FAN27G2958 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1217.6 949 65.4
MD05G1153500 Malus domestica HOM05D004953 ORTHO05D006193 0.0e+00 1217.6 952 65.3
FvH4_2g17460 Fragaria vesca HOM05D004953 ORTHO05D006193 0.0e+00 1214.5 949 65.4
FAN24G2388 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1214.5 949 65.4
VMungo1383G3652 Vigna mungo HOM05D004953 ORTHO05D006193 0.0e+00 1213.4 943 64.4
Manes.13G056300 Manihot esculenta HOM05D004953 ORTHO05D006193 0.0e+00 1208.7 949 64.5
Potri.014G175350 Populus trichocarpa HOM05D004953 ORTHO05D006193 0.0e+00 1206.4 960 64.5
FAN15G1962 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1204.9 948 64.9
Cpa.g.sc8.38 Carica papaya HOM05D004953 ORTHO05D006193 0.0e+00 1199.9 956 63.4
Prupe.8G186900 Prunus persica HOM05D004953 ORTHO05D006193 0.0e+00 1195.6 949 64.8
Lj1g0025378 Lotus japonicus HOM05D004953 ORTHO05D006193 0.0e+00 1195.3 944 63.7
Haze_03508 Corylus avellana HOM05D004953 ORTHO05D006193 0.0e+00 1188.3 948 64.3
Sabra14G0134100 Salix brachista HOM05D004953 ORTHO05D006193 0.0e+00 1188.3 957 64.1
Cfa010574 Carpinus fangiana HOM05D004953 ORTHO05D006193 0.0e+00 1184.1 948 64.1
Ca_08034_v3 Cicer arietinum L. HOM05D004953 ORTHO05D006193 0.0e+00 1179.9 944 62.2
Gorai.007G161300 Gossypium raimondii HOM05D004953 ORTHO05D006193 0.0e+00 1178.3 955 63.6
TWI36G1252 Tripterygium wilfordii HOM05D004953 ORTHO05D006193 0.0e+00 1177.5 960 62.7
Glyma.18G246600 Glycine max HOM05D004953 ORTHO05D006193 0.0e+00 1174.5 944 63.0
THA.LOC104819011 Tarenaya hassleriana HOM05D004953 ORTHO05D006193 0.0e+00 1173.7 952 61.7
CSS0012001 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 0.0e+00 1172.1 950 63.1
CiPaw.13G055800 Carya illinoinensis HOM05D004953 ORTHO05D006193 0.0e+00 1171.4 935 64.5
Dinv28790 Davidia involucrata HOM05D004953 ORTHO05D006193 0.0e+00 1171.4 948 62.4
CSS0005222 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 0.0e+00 1170.6 950 62.9
Medtr7g080880 Medicago truncatula HOM05D004953 ORTHO05D006193 0.0e+00 1170.2 943 62.0
Ciclev10018269m.g Citrus clementina HOM05D004953 ORTHO05D006193 0.0e+00 1168.7 945 63.9
Rhsim13G0055000 Rhododendron simsii HOM05D004953 ORTHO05D006193 0.0e+00 1157.5 945 61.5
CANSAT01G2219 Cannabis sativa HOM05D004953 ORTHO05D006193 0.0e+00 1151.3 952 61.7
TPR.G35843 Trifolium pratense HOM05D004953 ORTHO05D006193 0.0e+00 1147.9 952 62.1
QL09p045412 Quercus lobata HOM05D004953 ORTHO05D006193 0.0e+00 1145.6 987 61.5
Lj2C1111T4 Lonicera japonica HOM05D004953 ORTHO05D006193 0.0e+00 1135.6 945 61.7
Thhalv10005371m.g Eutrema salsugineum HOM05D004953 ORTHO05D006193 0.0e+00 1134.8 953 59.8
AT5G48390 Arabidopsis thaliana HOM05D004953 ORTHO05D006193 0.0e+00 1127.9 950 59.5
AL8G21200 Arabidopsis lyrata HOM05D004953 ORTHO05D006193 0.0e+00 1125.5 951 59.6
vmacro02841 Vaccinium macrocarpon HOM05D004953 ORTHO05D006193 0.0e+00 1122.5 968 60.0
Cc01_g15850 Coffea canephora HOM05D004953 ORTHO05D006193 0.0e+00 1120.9 948 59.8
Atru.BG.40.p Acer truncatum HOM05D004953 ORTHO05D006193 0.0e+00 1118.6 939 62.7
Oeu013420.1 Olea europaea HOM05D004953 ORTHO05D006193 0.0e+00 1116.7 952 58.9
C07p39140 Brassica napus HOM05D004953 ORTHO05D006193 0.0e+00 1114.0 947 59.0
BolC7t44434H Brassica oleracea HOM05D004953 ORTHO05D006193 0.0e+00 1114.0 947 59.0
CARHR183800 Cardamine hirsuta HOM05D004953 ORTHO05D006193 0.0e+00 1112.8 950 59.1
A06p39200 Brassica napus HOM05D004953 ORTHO05D006193 0.0e+00 1112.4 947 59.1
MELO3C008751.2 Cucumis melo HOM05D004953 ORTHO05D006193 0.0e+00 1110.5 929 60.5
Nn1g09452 Nelumbo nucifera HOM05D004953 ORTHO05D006193 0.0e+00 1107.8 948 58.9
Sp2g18750 Schrenkiella parvula HOM05D004953 ORTHO05D006193 0.0e+00 1104.0 955 58.5
SHI10219 Sapria himalayana HOM05D004953 ORTHO05D006193 0.0e+00 1102.8 968 58.6
Carub.0008s0798 Capsella rubella HOM05D004953 ORTHO05D006193 0.0e+00 1101.7 944 58.9
Migut.D00772 Erythranthe guttata HOM05D004953 ORTHO05D006193 0.0e+00 1100.1 947 58.6
CsaV3_2G009520 Cucumis sativus L. HOM05D004953 ORTHO05D006193 0.0e+00 1097.4 927 60.3
Psat3g100880 Pisum sativum HOM05D004953 ORTHO05D006193 0.0e+00 1092.8 944 59.6
arahy.Tifrunner.gnm1.ann1.57Z9Z9 Arachis hypogaea HOM05D004953 ORTHO05D006193 0.0e+00 1092.0 1004 56.9
Sed0024263 Sechium edule HOM05D004953 ORTHO05D006193 0.0e+00 1085.1 950 58.2
Hund02809 Selenicereus undatus HOM05D004953 ORTHO05D006193 7.8e-311 1070.5 948 56.8
Aa31LG11G3580 Aethionema arabicum HOM05D004953 ORTHO05D006193 1.3e-310 1069.7 965 57.2
EL10Ac5g10584 Beta vulgaris HOM05D004953 ORTHO05D006193 1.7e-310 1069.3 952 56.0
Peaxi162Scf02239g00020 Petunia axillaris HOM05D004953 ORTHO05D006193 1.7e-310 1069.3 947 56.8
Gohir.A11G144000 Gossypium hirsutum HOM05D004953 ORTHO05D006193 2.4e-309 1065.4 825 64.8
Nitab4.5_0008926g0010 Nicotiana tabacum HOM05D004953 ORTHO05D006193 3.2e-309 1065.1 946 57.2
SalBow3G1227 Salvia bowleyana HOM05D004953 ORTHO05D006193 5.4e-309 1064.3 952 56.8
CAN.G1468.3 Capsicum annuum HOM05D004953 ORTHO05D006193 2.1e-308 1062.4 946 57.3
ClCG11G010960 Citrullus lanatus HOM05D004953 ORTHO05D006193 6.0e-308 1060.8 956 58.8
PGSC0003DMG400021911 Solanum tuberosum HOM05D004953 ORTHO05D006193 6.0e-308 1060.8 949 57.1
Nitab4.5_0000038g0380 Nicotiana tabacum HOM05D004953 ORTHO05D006193 4.3e-306 1054.7 947 57.2
Solyc09g042760.2 Solanum lycopersicum HOM05D004953 ORTHO05D006193 1.6e-305 1052.7 943 57.2
Sc17g0001570 Simmondsia chinensis HOM05D004953 ORTHO05D006193 6.2e-305 1050.8 948 56.0
Lsat_1_v5_gn_8_98501 Lactuca sativa HOM05D004953 ORTHO05D006193 4.0e-304 1048.1 954 56.0
AUR62028642 Chenopodium quinoa HOM05D004953 ORTHO05D006193 1.2e-303 1046.6 950 55.2
GSVIVG01001528001 Vitis vinifera HOM05D004953 ORTHO05D006193 2.0e-303 1045.8 864 62.4
HanXRQChr12g0363951 Helianthus annuus HOM05D004953 ORTHO05D006193 2.9e-302 1042.0 957 55.9
Sopen09g015810 Solanum pennellii HOM05D004953 ORTHO05D006193 2.7e-300 1035.4 943 56.6
SGA_v2.0_scaffold8G04488 Striga asiatica HOM05D004953 ORTHO05D006193 6.6e-299 1030.8 948 56.3
Phvul.008G050500 Phaseolus vulgaris HOM05D004953 ORTHO05D006193 2.5e-298 1028.9 817 63.6
AUR62008065 Chenopodium quinoa HOM05D004953 ORTHO05D006193 3.1e-296 1021.9 949 54.4
MBI10_g23576_MAGBIO Magnolia biondii HOM05D004953 ORTHO05D006193 8.7e-291 1003.8 951 55.3
Aqoxy2G04177 Aquilegia oxysepala HOM05D004953 ORTHO05D006193 3.1e-288 995.3 922 56.3
PSO478G1281 Papaver somniferum HOM05D004953 ORTHO05D006193 1.5e-287 993.0 949 55.6
ECA236G0268 Erigeron canadensis HOM05D004953 ORTHO05D006193 4.9e-286 988.0 949 54.4
Aa31LG11G8930 Aethionema arabicum HOM05D004953 ORTHO05D006193 2.5e-285 985.7 951 54.7
PSO017G6601 Papaver somniferum HOM05D004953 ORTHO05D006193 2.5e-285 985.7 949 55.3
TAR365G0304 Trochodendron aralioides HOM05D004953 ORTHO05D006193 1.3e-283 979.9 771 64.5
unitig_52.g16794 Utricularia gibba HOM05D004953 ORTHO05D006193 2.4e-272 942.6 950 51.6
Sed0015090 Sechium edule HOM05D004953 ORTHO05D006193 8.8e-267 924.1 947 52.8
Gohir.D11G150400 Gossypium hirsutum HOM05D004953 ORTHO05D006193 7.4e-266 921.0 749 64.2
BcaC06g30800 Brassica carinata HOM05D004953 ORTHO05D006193 2.7e-260 902.5 821 54.9
DCAR_004775 Daucus carota HOM05D004953 ORTHO05D006193 5.3e-248 861.7 688 62.9
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 5.4e-232 808.5 698 60.3
HPP92_001916 Vanilla planifolia HOM05D004953 ORTHO05D006193 5.6e-229 798.5 953 46.4
CDE07G1537 Ceratophyllum demersum HOM05D004953 ORTHO05D006193 4.9e-217 758.8 948 44.4
ATR0743G003 Amborella trichopoda HOM05D004953 ORTHO05D006193 3.5e-199 699.5 973 41.1
Ah.11g050790 Amaranthus hybridus HOM05D004953 ORTHO05D006193 7.8e-199 698.4 668 55.1
Os01g0890900 Oryza sativa ssp. japonica HOM05D004953 ORTHO05D006193 2.5e-189 666.8 878 42.7
Lalb_Chr03g0040541 Lupinus albus HOM05D004953 ORTHO05D006193 4.5e-178 629.4 486 62.6
SEGI_29467 Sequoiadendron giganteum HOM05D004953 ORTHO05D006193 1.2e-175 621.3 898 39.2
Glyma.09G246350 Glycine max HOM05D004953 ORTHO05D006193 9.7e-149 531.9 421 62.0
Lalb_Chr03g0040531 Lupinus albus HOM05D004953 ORTHO05D006193 1.2e-146 525.0 473 58.4
SMO201G0221 Selaginella moellendorffii HOM05D004953 ORTHO05D006193 3.2e-144 516.9 878 35.6
Zm00001eb145140 Zea mays HOM05D004953 ORTHO05D006193 1.2e-143 515.0 755 41.5
Mapoly0032s0035 Marchantia polymorpha HOM05D004953 ORTHO05D006193 2.0e-133 481.1 949 33.8
Pp3c2_410 Physcomitrium patens HOM05D004953 ORTHO05D006193 7.2e-128 462.6 883 33.7
Actinidia33395 Actinidia chinensis HOM05D004953 ORTHO05D006193 2.3e-126 457.6 399 57.9
CANSAT01G2868 Cannabis sativa HOM05D004953 ORTHO05D006193 4.4e-125 453.4 462 55.4
Actinidia33396 Actinidia chinensis HOM05D004953 ORTHO05D006193 5.2e-118 429.9 437 52.6
Actinidia23342 Actinidia chinensis HOM05D004953 ORTHO05D006193 2.8e-87 327.8 437 43.7
Actinidia12854 Actinidia chinensis HOM05D004953 ORTHO05D006193 2.3e-81 308.1 259 59.5
FAN15G1853 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.5e-72 278.1 189 68.3
FAN24G3373 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.8e-47 194.9 342 38.3
FvH4_2g09600 Fragaria vesca HOM05D004953 ORTHO05D006193 8.2e-47 193.4 336 38.4
TPR.G1778 Trifolium pratense HOM05D004953 ORTHO05D019267 6.1e-42 177.2 463 31.1
FAN11G3683 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.5e-40 171.8 352 33.2
Actinidia23343 Actinidia chinensis HOM05D004953 ORTHO05D006193 7.2e-35 153.7 155 51.6
FvH4_3g38850 Fragaria vesca HOM05D004953 ORTHO05D006193 5.7e-32 144.1 122 63.1
FvH4_4g15200 Fragaria vesca HOM05D004953 ORTHO05D006193 5.3e-30 137.5 134 51.5
Actinidia29995 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.1e-24 119.8 254 33.9
FvH4_6g36680 Fragaria vesca HOM05D004953 ORTHO05D006193 4.8e-23 114.4 99 52.5
FAN14G2335 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.2e-21 109.8 135 46.7
FvH4_4g10312 Fragaria vesca HOM05D004953 ORTHO05D006193 2.9e-20 105.1 72 62.5
FAN14G2572 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.9e-20 105.1 72 62.5
FvH4_6g27414 Fragaria vesca HOM05D004953 ORTHO05D006193 3.8e-20 104.8 72 62.5
FvH4_7g13151 Fragaria vesca HOM05D004953 ORTHO05D006193 1.9e-19 102.4 69 69.6
FvH4_6g36881 Fragaria vesca HOM05D004953 ORTHO05D006193 3.2e-19 101.7 72 61.1
FvH4_2g12761 Fragaria vesca HOM05D004953 ORTHO05D006193 5.5e-19 100.9 72 58.3
TAR365G0721 Trochodendron aralioides HOM05D004953 ORTHO05D006193 1.2e-18 99.8 141 41.8
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 5.7e-16 90.9 144 38.9
FvH4_4g15182 Fragaria vesca HOM05D004953 ORTHO05D006193 3.5e-13 81.6 46 80.4
CSS0012475 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 5.0e-12 77.8 61 55.7
FvH4_7g08382 Fragaria vesca HOM05D004953 ORTHO05D006193 6.5e-12 77.4 55 54.5
FAN14G1126 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.5e-11 75.5 55 52.7
CSS0023073 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 4.2e-11 74.7 61 54.1
FAN09G3899 Fragaria x ananassa HOM05D004953 ORTHO05D006193 5.5e-11 74.3 55 52.7
CSS0036997 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 2.7e-10 72.0 67 52.2
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 2.7e-10 72.0 206 31.1
FAN14G1607 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.4e-09 69.7 64 65.6
CSS0040358 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 5.2e-09 67.8 67 50.7
SMO203G0202 Selaginella moellendorffii HOM05D003498 ORTHO05D006193 2.0e-08 65.9 60 51.7
SMO203G0177 Selaginella moellendorffii HOM05D004953 ORTHO05D006193 9.8e-08 63.5 171 29.2
FAN24G1763 Fragaria x ananassa HOM05D004953 ORTHO05D006193 5.4e-06 57.8 38 65.8


User provided reference genes

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