Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 5.3e-179 631.3 432 100.0
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 5.6e-112 408.7 443 63.0
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 7.4e-112 408.3 444 65.1
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 3.8e-108 396.0 440 63.0
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 1.4e-107 394.0 444 57.4
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 2.3e-105 386.7 444 59.5
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 3.0e-105 386.3 441 59.4
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 5.1e-105 385.6 444 63.1
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 1.1e-104 384.4 448 56.2
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 1.5e-104 384.0 432 58.8
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 9.6e-104 381.3 444 56.5
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 8.2e-103 378.3 444 59.5
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 7.6e-101 371.7 439 60.8
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 7.6e-101 371.7 442 57.5
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 1.3e-100 370.9 441 65.8
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 1.7e-100 370.5 435 62.8
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 5.0e-100 369.0 444 55.2
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 5.0e-100 369.0 442 57.0
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 4.2e-99 365.9 440 56.4
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 7.1e-99 365.2 443 54.6
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 1.6e-98 364.0 434 56.5
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 2.7e-98 363.2 442 55.9
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 3.5e-98 362.8 443 57.8
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 7.9e-98 361.7 368 61.1
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 7.9e-98 361.7 439 56.3
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 1.0e-97 361.3 443 55.8
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 1.3e-97 360.9 432 58.8
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 1.8e-97 360.5 360 60.6
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 2.3e-97 360.1 447 64.9
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 6.7e-97 358.6 445 61.6
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 8.7e-97 358.2 437 56.1
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 1.1e-96 357.8 437 55.8
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 1.5e-96 357.5 442 60.4
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 1.9e-96 357.1 437 55.8
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 2.5e-96 356.7 446 54.7
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 2.5e-96 356.7 360 60.3
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 2.5e-96 356.7 438 56.4
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 2.5e-96 356.7 442 54.8
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 4.3e-96 355.9 360 60.3
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 5.7e-96 355.5 442 60.4
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 7.4e-96 355.1 442 57.7
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 9.7e-96 354.8 437 65.0
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 9.7e-96 354.8 442 60.9
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 1.3e-95 354.4 348 61.8
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 4.8e-95 352.4 447 57.3
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 4.8e-95 352.4 446 54.3
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 4.8e-95 352.4 442 53.8
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 8.2e-95 351.7 442 60.0
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 1.1e-94 351.3 445 53.5
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 1.4e-94 350.9 432 61.8
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 1.8e-94 350.5 445 53.5
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 4.1e-94 349.4 442 54.3
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 4.1e-94 349.4 439 55.6
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 4.1e-94 349.4 438 53.4
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 5.3e-94 349.0 444 54.1
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 2.6e-93 346.7 437 57.7
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 5.9e-93 345.5 433 58.2
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 5.9e-93 345.5 445 54.2
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 7.7e-93 345.1 437 57.2
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 1.0e-92 344.7 445 53.0
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 1.0e-92 344.7 449 57.9
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 1.0e-92 344.7 440 53.2
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 1.3e-92 344.4 444 61.5
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 1.7e-92 344.0 435 54.9
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 2.2e-92 343.6 445 52.8
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 2.9e-92 343.2 443 62.3
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 8.5e-92 341.7 441 53.1
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 1.1e-91 341.3 444 64.0
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 1.1e-91 341.3 442 53.6
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.4e-91 340.9 428 59.8
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 2.5e-91 340.1 440 52.0
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 2.5e-91 340.1 434 55.3
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 2.5e-91 340.1 432 53.2
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 2.5e-91 340.1 440 53.2
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 4.2e-91 339.3 441 52.8
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 5.5e-91 339.0 441 52.8
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 5.5e-91 339.0 441 52.6
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 5.5e-91 339.0 439 51.0
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 9.4e-91 338.2 430 59.1
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 1.2e-90 337.8 353 56.4
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 2.1e-90 337.0 442 53.6
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 2.1e-90 337.0 431 57.8
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 4.6e-90 335.9 444 51.8
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 6.1e-90 335.5 445 64.7
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 6.1e-90 335.5 444 53.2
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 1.4e-89 334.3 350 60.3
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 1.8e-89 334.0 441 62.1
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 1.8e-89 334.0 441 62.1
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 2.3e-89 333.6 438 51.6
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 3.9e-89 332.8 437 56.3
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 8.8e-89 331.6 440 65.2
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 2.0e-88 330.5 439 52.8
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 3.3e-88 329.7 465 51.6
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 3.3e-88 329.7 444 51.4
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 4.3e-88 329.3 443 50.6
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 5.7e-88 328.9 442 53.6
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 5.7e-88 328.9 442 55.0
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 9.7e-88 328.2 436 51.1
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 9.7e-88 328.2 446 50.7
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 9.7e-88 328.2 435 50.8
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 1.7e-87 327.4 442 51.8
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 1.8e-86 323.9 345 62.0
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 4.1e-86 322.8 442 54.8
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 3.4e-85 319.7 446 53.1
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 1.7e-84 317.4 441 50.1
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 4.2e-83 312.8 365 53.7
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 4.7e-82 309.3 443 49.7
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 6.1e-82 308.9 445 48.8
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 7.9e-82 308.5 453 54.5
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 1.8e-81 307.4 444 48.9
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.7e-79 300.8 440 52.5
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.8e-78 297.4 441 54.6
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 2.4e-78 297.0 335 57.0
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 2.4e-78 297.0 434 48.2
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 1.0e-76 291.6 399 52.6
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 2.2e-76 290.4 442 45.9
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 2.2e-76 290.4 342 60.2
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 3.8e-76 289.7 353 54.7
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 9.4e-75 285.0 363 54.3
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 9.7e-72 275.0 369 53.7
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 6.3e-71 272.3 352 53.1
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 3.1e-70 270.0 445 48.1
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 2.6e-69 266.9 357 48.7
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 1.5e-67 261.2 444 44.1
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 2.8e-63 246.9 374 47.9
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 1.8e-62 244.2 371 47.2
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 2.7e-61 240.4 426 43.7
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 1.4e-54 218.0 436 39.2
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 1.6e-50 204.5 223 56.1
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 2.1e-50 204.1 377 39.5
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 8.0e-50 202.2 249 56.6
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.0e-49 201.8 447 40.3
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 3.4e-48 196.8 291 49.1
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 1.2e-42 178.3 224 51.8
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 1.5e-40 171.4 437 42.8
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 9.2e-38 162.2 278 45.7
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 9.2e-38 162.2 278 45.7
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 1.7e-36 157.9 363 35.0
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 1.6e-34 151.4 256 41.0
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 5.8e-32 142.9 394 33.5
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 2.2e-31 141.0 300 37.3
Actinidia11233 Actinidia chinensis HOM05D004552 ORTHO05D005501 1.9e-30 137.9 342 38.9
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.4e-30 137.5 177 46.9
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 1.2e-29 135.2 251 40.2
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 1.0e-28 132.1 394 33.0
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 4.3e-27 126.7 111 59.5
VMungo0647G0506 Vigna mungo HOM05D004552 ORTHO05D005501 2.3e-25 120.9 115 55.7
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 2.4e-22 110.9 252 32.1
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 3.9e-20 103.6 182 39.6
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 3.3e-19 100.5 195 41.0
Lj3E543T1 Lonicera japonica HOM05D004552 ORTHO05D005501 1.9e-14 84.7 112 59.8
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 7.1e-14 82.8 152 52.6
AagrBONN_evm.TU.Sc2ySwM_344.2458 Anthoceros agrestis HOM05D004552 ORTHO05D005501 2.0e-08 64.7 213 24.9
MCO09G463 Micromonas commoda HOM05D004552 ORTHO05D005501 7.6e-08 62.8 118 35.6


User provided reference genes

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