Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J01630 Eucalyptus grandis HOM05D004769 ORTHO05D005605 1.4e-159 566.6 386 100.0
Thecc.04G060900 Theobroma cacao HOM05D004769 ORTHO05D005605 1.3e-115 420.6 395 78.2
CiPaw.03G077600 Carya illinoinensis HOM05D004769 ORTHO05D005605 7.0e-114 414.8 394 75.6
PGR042G1215 Punica granatum HOM05D004769 ORTHO05D005605 7.0e-114 414.8 387 76.0
Cpa.g.sc178.7 Carica papaya HOM05D004769 ORTHO05D005605 5.6e-111 405.2 403 74.9
TWI74G1557 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 5.6e-111 405.2 391 70.6
TWI77G0470 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 7.3e-111 404.8 388 78.4
Prupe.1G069400 Prunus persica HOM05D004769 ORTHO05D005605 9.5e-111 404.4 410 68.0
Atru.chr1.1954 Acer truncatum HOM05D004769 ORTHO05D005605 2.1e-110 403.3 389 72.2
Dinv19070 Davidia involucrata HOM05D004769 ORTHO05D005605 2.1e-110 403.3 389 72.0
Cfa007768 Carpinus fangiana HOM05D004769 ORTHO05D005605 2.8e-110 402.9 389 79.7
MD16G1242400 Malus domestica HOM05D004769 ORTHO05D005605 1.1e-109 401.0 388 72.4
GSVIVG01026312001 Vitis vinifera HOM05D004769 ORTHO05D005605 1.1e-109 401.0 389 68.6
Medtr5g077180 Medicago truncatula HOM05D004769 ORTHO05D005605 2.3e-109 399.8 386 77.2
Haze_14305 Corylus avellana HOM05D004769 ORTHO05D005605 1.5e-108 397.1 386 73.6
MD13G1237000 Malus domestica HOM05D004769 ORTHO05D005605 2.0e-108 396.7 398 69.1
Lalb_Chr17g0345901 Lupinus albus HOM05D004769 ORTHO05D005605 5.8e-108 395.2 396 75.3
Hma1.2p1_0158F.1_g069800 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 1.7e-107 393.7 392 64.8
TPR.G9995 Trifolium pratense HOM05D004769 ORTHO05D005605 1.1e-106 391.0 386 74.9
Actinidia35715 Actinidia chinensis HOM05D004769 ORTHO05D005605 2.4e-106 389.8 390 69.2
TAR375G0174 Trochodendron aralioides HOM05D004769 ORTHO05D005605 3.2e-106 389.4 387 64.1
Ca_05772_v3 Cicer arietinum L. HOM05D004769 ORTHO05D005605 4.1e-106 389.0 386 59.6
Sc11g0004750 Simmondsia chinensis HOM05D004769 ORTHO05D005605 2.0e-105 386.7 390 72.3
Potri.004G075700 Populus trichocarpa HOM05D004769 ORTHO05D005605 1.3e-104 384.0 388 68.8
RcHm_v2.0_Chr4g0398571 Rosa chinensis HOM05D004769 ORTHO05D005605 3.9e-104 382.5 408 63.7
Phvul.008G239200 Phaseolus vulgaris HOM05D004769 ORTHO05D005605 5.0e-104 382.1 387 79.1
CANSAT78G2338 Cannabis sativa HOM05D004769 ORTHO05D005605 1.9e-103 380.2 397 73.3
Gorai.004G064700 Gossypium raimondii HOM05D004769 ORTHO05D005605 3.3e-103 379.4 388 76.0
QL02p060102 Quercus lobata HOM05D004769 ORTHO05D005605 3.3e-103 379.4 472 63.6
VMungo0647G0921 Vigna mungo HOM05D004769 ORTHO05D005605 3.3e-103 379.4 397 73.8
FvH4_4g06670 Fragaria vesca HOM05D004769 ORTHO05D005605 4.3e-103 379.0 387 69.0
Nn1g02020 Nelumbo nucifera HOM05D004769 ORTHO05D005605 4.3e-103 379.0 410 70.5
Potri.017G144121 Populus trichocarpa HOM05D004769 ORTHO05D005605 4.3e-103 379.0 388 72.2
Glyma.14G211600 Glycine max HOM05D004769 ORTHO05D005605 5.6e-103 378.6 392 77.6
Gohir.D08G062500 Gossypium hirsutum HOM05D004769 ORTHO05D005605 5.6e-103 378.6 388 76.0
Sabra04G0050400 Salix brachista HOM05D004769 ORTHO05D005605 7.3e-103 378.3 395 68.1
MBI04_g35346_MAGBIO Magnolia biondii HOM05D004769 ORTHO05D005605 3.6e-102 375.9 388 75.5
COL.COLO4_05842 Corchorus olitorius HOM05D004769 ORTHO05D005605 4.7e-102 375.6 388 58.8
Gohir.A08G052900 Gossypium hirsutum HOM05D004769 ORTHO05D005605 6.2e-102 375.2 388 76.5
ECA233G3826 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.3e-101 373.2 391 61.9
Cc07_g12960 Coffea canephora HOM05D004769 ORTHO05D005605 3.1e-101 372.9 389 67.4
Aqoxy5G00268 Aquilegia oxysepala HOM05D004769 ORTHO05D005605 6.8e-101 371.7 387 67.7
Hma1.2p1_0034F.1_g021310 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 2.9e-99 366.3 359 77.2
Nitab4.5_0000574g0160 Nicotiana tabacum HOM05D004769 ORTHO05D005605 4.9e-99 365.5 391 74.7
AUR62017457 Chenopodium quinoa HOM05D004769 ORTHO05D005605 6.4e-99 365.2 387 59.9
Glyma.02G241900 Glycine max HOM05D004769 ORTHO05D005605 6.4e-99 365.2 435 66.7
MSTRG.3686 Avicennia marina HOM05D004769 ORTHO05D005605 1.1e-98 364.4 389 70.2
PSO017G5633 Papaver somniferum HOM05D004769 ORTHO05D005605 1.4e-98 364.0 393 69.7
ClCG01G008650 Citrullus lanatus HOM05D004769 ORTHO05D005605 3.2e-98 362.8 392 72.2
FAN22G0974 Fragaria x ananassa HOM05D004769 ORTHO05D005605 2.7e-97 359.8 375 70.1
Lsat_1_v5_gn_8_18601 Lactuca sativa HOM05D004769 ORTHO05D005605 3.5e-97 359.4 391 65.0
Peaxi162Scf00442g00627 Petunia axillaris HOM05D004769 ORTHO05D005605 3.5e-97 359.4 390 72.3
FAN07G0829 Fragaria x ananassa HOM05D004769 ORTHO05D005605 4.6e-97 359.0 369 71.5
Lj4A255T24 Lonicera japonica HOM05D004769 ORTHO05D005605 4.6e-97 359.0 392 62.5
PSO170G3102 Papaver somniferum HOM05D004769 ORTHO05D005605 1.0e-96 357.8 391 68.0
FAN17G2568 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.3e-96 357.5 375 68.3
arahy.Tifrunner.gnm1.ann1.SAK0JK Arachis hypogaea HOM05D004769 ORTHO05D005605 3.0e-96 356.3 421 71.7
AUR62032521 Chenopodium quinoa HOM05D004769 ORTHO05D005605 3.0e-96 356.3 387 51.7
CAN.G525.4 Capsicum annuum HOM05D004769 ORTHO05D005605 3.9e-96 355.9 389 73.8
Sed0006929 Sechium edule HOM05D004769 ORTHO05D005605 3.9e-96 355.9 394 67.0
Solyc04g014560.4 Solanum lycopersicum HOM05D004769 ORTHO05D005605 1.1e-95 354.4 392 73.5
Sopen04g006720 Solanum pennellii HOM05D004769 ORTHO05D005605 1.1e-95 354.4 391 72.9
PGSC0003DMG400023617 Solanum tuberosum HOM05D004769 ORTHO05D005605 1.1e-95 354.4 391 71.6
TAR374G1377 Trochodendron aralioides HOM05D004769 ORTHO05D005605 1.1e-95 354.4 386 65.8
FAN12G3741 Fragaria x ananassa HOM05D004769 ORTHO05D005605 3.3e-95 352.8 377 68.2
HanXRQChr08g0218471 Helianthus annuus HOM05D004769 ORTHO05D005605 3.3e-95 352.8 389 64.0
MELO3C025080.2 Cucumis melo HOM05D004769 ORTHO05D005605 5.6e-95 352.1 438 67.1
EL10Ac6g13916 Beta vulgaris HOM05D004769 ORTHO05D005605 9.5e-95 351.3 417 64.3
CsaV3_5G020660 Cucumis sativus L. HOM05D004769 ORTHO05D005605 6.2e-94 348.6 390 69.7
Lalb_Chr04g0251441 Lupinus albus HOM05D004769 ORTHO05D005605 8.1e-94 348.2 385 75.3
CSS0001926 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 1.4e-93 347.4 211 82.0
HPP92_017811 Vanilla planifolia HOM05D004769 ORTHO05D005605 4.0e-93 345.9 387 63.0
Migut.H02243 Erythranthe guttata HOM05D004769 ORTHO05D005605 2.0e-92 343.6 390 66.4
ATR0083G043 Amborella trichopoda HOM05D004769 ORTHO05D005605 2.6e-92 343.2 213 79.3
Rhsim10G0183300 Rhododendron simsii HOM05D004769 ORTHO05D005605 3.4e-92 342.8 386 69.7
DCAR_028435 Daucus carota HOM05D004769 ORTHO05D005605 1.3e-91 340.9 215 78.6
THA.LOC104823824 Tarenaya hassleriana HOM05D004769 ORTHO05D005605 3.8e-91 339.3 388 68.3
Oeu029083.1 Olea europaea HOM05D004769 ORTHO05D005605 2.4e-90 336.7 464 55.2
unitig_748.g7024 Utricularia gibba HOM05D004769 ORTHO05D005605 5.4e-90 335.5 194 84.5
Oeu032315.1 Olea europaea HOM05D004769 ORTHO05D005605 9.2e-90 334.7 459 55.8
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 1.2e-89 334.3 199 80.9
CARHR215720 Cardamine hirsuta HOM05D004769 ORTHO05D005605 2.1e-89 333.6 388 62.6
Os05g0178900 Oryza sativa ssp. japonica HOM05D004769 ORTHO05D005605 2.1e-89 333.6 403 62.8
Lj2C513G15 Lonicera japonica HOM05D004769 ORTHO05D005605 4.6e-89 332.4 199 80.9
SGA_v2.0_scaffold45G17131 Striga asiatica HOM05D004769 ORTHO05D005605 1.0e-88 331.3 205 82.0
vmacro20487 Vaccinium macrocarpon HOM05D004769 ORTHO05D005605 1.7e-88 330.5 181 86.7
AL7G46000 Arabidopsis lyrata HOM05D004769 ORTHO05D005605 6.6e-88 328.6 199 80.9
SGA_v2.0_scaffold115G32089 Striga asiatica HOM05D004769 ORTHO05D005605 8.7e-88 328.2 177 89.3
Sp7g05100 Schrenkiella parvula HOM05D004769 ORTHO05D005605 1.9e-87 327.0 387 53.0
Ah.02g128700 Amaranthus hybridus HOM05D004769 ORTHO05D005605 4.3e-87 325.9 456 56.8
Thhalv10027788m.g Eutrema salsugineum HOM05D004769 ORTHO05D005605 7.3e-87 325.1 388 64.7
BolC4t25993H Brassica oleracea HOM05D004769 ORTHO05D005605 1.6e-86 323.9 388 58.8
C04p44180 Brassica napus HOM05D004769 ORTHO05D005605 2.1e-86 323.6 388 59.0
Carub.0007s3249 Capsella rubella HOM05D004769 ORTHO05D005605 1.4e-85 320.9 197 79.7
Migut.K01113 Erythranthe guttata HOM05D004769 ORTHO05D005605 3.1e-85 319.7 175 86.9
Zm00001eb377290 Zea mays HOM05D004769 ORTHO05D005605 9.0e-85 318.2 209 74.2
A04p10540 Brassica napus HOM05D004769 ORTHO05D005605 2.9e-83 313.2 388 61.3
Pp3c17_5870 Physcomitrium patens HOM05D004769 ORTHO05D005605 2.4e-82 310.1 211 70.6
BraA04t16720Z Brassica rapa HOM05D004769 ORTHO05D005605 4.2e-82 309.3 388 66.8
Pp3c14_14980 Physcomitrium patens HOM05D004769 ORTHO05D005605 1.2e-81 307.8 188 77.1
Pp3c14_14989 Physcomitrium patens HOM05D004769 ORTHO05D005605 1.2e-81 307.8 188 77.1
BcaC02g09560 Brassica carinata HOM05D004769 ORTHO05D005605 1.3e-80 304.3 388 56.7
MapolyY_B0025 Marchantia polymorpha HOM05D004769 ORTHO05D005605 3.0e-80 303.1 209 69.4
Dinv28230 Davidia involucrata HOM05D004769 ORTHO05D005605 6.6e-80 302.0 348 66.1
SMO351G0501 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 2.1e-78 297.0 175 80.0
Mapoly0017s0020 Marchantia polymorpha HOM05D004769 ORTHO05D005605 1.2e-76 291.2 176 78.4
LjContig00141g0012428 Lotus japonicus HOM05D004769 ORTHO05D005605 2.9e-75 286.6 433 44.8
CBR_g22246 Chara braunii HOM05D004769 ORTHO05D005605 1.1e-74 284.6 177 77.4
Nitab4.5_0005193g0040 Nicotiana tabacum HOM05D004769 ORTHO05D005605 6.7e-72 275.4 349 71.9
Sed0026946 Sechium edule HOM05D004769 ORTHO05D005605 3.3e-71 273.1 347 68.6
Ciclev10015797m.g Citrus clementina HOM05D004769 ORTHO05D005605 5.8e-68 262.3 356 64.6
Duzib211G0206 Durio zibethinus HOM05D004769 ORTHO05D005605 1.7e-67 260.8 324 70.7
SEGI_40758 Sequoiadendron giganteum HOM05D004769 ORTHO05D005605 1.0e-64 251.5 148 81.8
CDE02G1258 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 1.7e-59 234.2 328 56.1
Manes.02G080000 Manihot esculenta HOM05D004769 ORTHO05D005605 1.1e-58 231.5 319 68.7
Zm00001eb283000 Zea mays HOM05D004769 ORTHO05D005605 8.7e-56 221.9 328 56.7
CDE02G3274 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 1.2e-52 211.5 101 92.1
Cre03.g178300 Chlamydomonas reinhardtii HOM05D004769 ORTHO05D005605 4.5e-52 209.5 170 61.2
Psat2g044720 Pisum sativum HOM05D004769 ORTHO05D005605 5.5e-50 202.6 299 75.6
Lalb_Chr10g0104091 Lupinus albus HOM05D004769 ORTHO05D005605 6.7e-48 195.7 95 90.5
CSS0045560 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 1.1e-45 188.3 96 87.5
Lalb_Chr10g0104101 Lupinus albus HOM05D004769 ORTHO05D005605 1.1e-45 188.3 296 65.9
SMO231G0026 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 3.4e-44 183.3 180 57.2
PRCOL_00000163 Prasinoderma coloniale HOM05D004769 ORTHO05D005605 2.9e-43 180.3 163 54.6
AT5G37370 Arabidopsis thaliana HOM05D004769 ORTHO05D005605 9.4e-42 175.3 121 76.9
MCO07G113 Micromonas commoda HOM05D004769 ORTHO05D005605 1.2e-41 174.9 177 49.2
CDE02G0598 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 7.9e-41 172.2 106 73.6
Ciclev10018227m.g Citrus clementina HOM05D004769 ORTHO05D005605 5.5e-34 149.4 91 78.0
Lj1g0013060 Lotus japonicus HOM05D004769 ORTHO05D005605 2.2e-30 137.5 121 59.5
FAN05G2233 Fragaria x ananassa HOM05D004769 ORTHO05D005605 3.7e-30 136.7 263 60.1
FAN07G1815 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.8e-29 134.4 260 60.4
Oeu048972.1 Olea europaea HOM05D004769 ORTHO05D005605 2.2e-27 127.5 59 96.6
ATR0127G005 Amborella trichopoda HOM05D004769 ORTHO05D005605 1.9e-26 124.4 77 77.9
CSS0036345 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 2.5e-26 124.0 294 57.8
CDE02G3573 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 2.1e-25 120.9 86 74.4
Actinidia28787 Actinidia chinensis HOM05D004769 ORTHO05D005605 8.8e-24 115.5 321 45.5
Lj2g0009880 Lotus japonicus HOM05D004769 ORTHO05D005605 2.4e-21 107.5 74 66.2
Lj1g0013083 Lotus japonicus HOM05D004769 ORTHO05D005605 1.3e-19 101.7 68 66.2
HanXRQChr14g0429111 Helianthus annuus HOM05D004769 ORTHO05D005605 1.1e-18 98.6 45 95.6
HanXRQChr14g0429051 Helianthus annuus HOM05D004769 ORTHO05D005605 9.4e-18 95.5 45 93.3
Sed0001997 Sechium edule HOM05D004769 ORTHO05D005605 4.7e-17 93.2 48 85.4
SMO231G0020 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 5.2e-16 89.7 76 55.3
Aa31LG9G17630 Aethionema arabicum HOM05D004769 ORTHO05D005605 6.8e-16 89.4 43 93.0
Gohir.A02G124601 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.2e-15 88.6 43 90.7
SMO351G0097 Selaginella moellendorffii HOM05D007698 ORTHO05D009663 2.0e-15 87.8 79 54.4
Zm00001eb046660 Zea mays HOM05D004769 ORTHO05D005605 4.4e-15 86.7 43 88.4
Zm00001eb221230 Zea mays HOM05D004769 ORTHO05D005605 1.3e-14 85.1 42 90.5
AagrBONN_evm.TU.Sc2ySwM_344.2680 Anthoceros agrestis HOM05D004769 ORTHO05D005605 2.8e-14 84.0 66 66.7
Zm00001eb361740 Zea mays HOM05D004769 ORTHO05D005605 4.8e-14 83.2 43 90.7
Zm00001eb313200 Zea mays HOM05D004769 ORTHO05D005605 7.7e-12 75.9 43 83.7
FAN23G0276 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.1e-10 72.0 61 59.0
Gohir.A11G193800 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.4e-08 65.1 32 93.8
Gohir.A08G086562 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.5e-07 61.6 30 90.0


User provided reference genes

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