Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J00726 Eucalyptus grandis HOM05D005156 ORTHO05D006710 1.0e-185 653.3 340 100.0
Potri.001G254000 Populus trichocarpa HOM05D005156 ORTHO05D006710 6.6e-148 527.7 337 80.1
CiPaw.13G153000 Carya illinoinensis HOM05D005156 ORTHO05D006710 3.6e-146 521.9 336 79.8
GSVIVG01037376001 Vitis vinifera HOM05D005156 ORTHO05D006710 4.0e-145 518.5 340 77.6
Cfa009832 Carpinus fangiana HOM05D005156 ORTHO05D006710 6.8e-145 517.7 342 78.9
CSS0001612 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 2.2e-143 512.7 341 76.5
CSS0030488 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 2.2e-143 512.7 341 76.2
MD11G1196200 Malus domestica HOM05D005156 ORTHO05D006710 2.2e-143 512.7 337 77.4
Hma1.2p1_1115F.1_g258845 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 1.4e-142 510.0 335 77.0
Atru.chr3.2617 Acer truncatum HOM05D005156 ORTHO05D006710 2.0e-141 506.1 333 77.2
RcHm_v2.0_Chr5g0050911 Rosa chinensis HOM05D005156 ORTHO05D006710 2.0e-141 506.1 331 77.9
Actinidia16358 Actinidia chinensis HOM05D005156 ORTHO05D006710 7.8e-141 504.2 341 76.0
FvH4_3g28170 Fragaria vesca HOM05D005156 ORTHO05D006710 7.8e-141 504.2 331 77.3
PGR119G1881 Punica granatum HOM05D005156 ORTHO05D006710 1.3e-140 503.4 337 76.9
Sc16g0011170 Simmondsia chinensis HOM05D005156 ORTHO05D006710 1.3e-140 503.4 341 75.7
Thecc.09G243300 Theobroma cacao HOM05D005156 ORTHO05D006710 1.3e-140 503.4 327 78.0
TAR626G1548 Trochodendron aralioides HOM05D005156 ORTHO05D006710 1.7e-140 503.1 340 76.2
FAN16G2156 Fragaria x ananassa HOM05D005156 ORTHO05D006710 5.0e-140 501.5 331 76.7
Lalb_Chr10g0094741 Lupinus albus HOM05D005156 ORTHO05D006710 6.6e-140 501.1 335 77.0
Prupe.4G258300 Prunus persica HOM05D005156 ORTHO05D006710 8.6e-140 500.7 337 76.0
Lj3g0017854 Lotus japonicus HOM05D005156 ORTHO05D006710 1.1e-139 500.4 337 76.6
CANSAT54G2883 Cannabis sativa HOM05D005156 ORTHO05D006710 4.3e-139 498.4 330 76.7
MSTRG.18451 Avicennia marina HOM05D005156 ORTHO05D006710 9.5e-139 497.3 335 76.7
Cpa.g.sc84.13 Carica papaya HOM05D005156 ORTHO05D006710 9.5e-139 497.3 337 75.1
Gorai.001G136000 Gossypium raimondii HOM05D005156 ORTHO05D006710 1.2e-138 496.9 330 77.0
Ciclev10015838m.g Citrus clementina HOM05D005156 ORTHO05D006710 1.6e-138 496.5 328 76.8
Gohir.A07G121700 Gossypium hirsutum HOM05D005156 ORTHO05D006710 4.7e-138 495.0 330 77.0
Gohir.D07G126000 Gossypium hirsutum HOM05D005156 ORTHO05D006710 4.7e-138 495.0 330 76.7
PSO210G1653 Papaver somniferum HOM05D005156 ORTHO05D006710 6.1e-138 494.6 331 76.7
Aqoxy8s002 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 8.0e-138 494.2 334 76.9
CsaV3_1G043140 Cucumis sativus L. HOM05D005156 ORTHO05D006710 1.2e-136 490.3 337 74.5
QL01p017825 Quercus lobata HOM05D005156 ORTHO05D006710 3.4e-136 488.8 336 76.5
Migut.D00644 Erythranthe guttata HOM05D005156 ORTHO05D006710 9.8e-136 487.3 333 75.7
Oeu001490.1 Olea europaea HOM05D005156 ORTHO05D006710 1.7e-135 486.5 333 75.1
PSO210G0499 Papaver somniferum HOM05D005156 ORTHO05D006710 3.7e-135 485.3 331 75.5
EL10Ac4g10175 Beta vulgaris HOM05D005156 ORTHO05D006710 1.9e-134 483.0 335 73.7
Ah.06g194400 Amaranthus hybridus HOM05D005156 ORTHO05D006710 4.1e-134 481.9 334 74.9
Glyma.09G002700 Glycine max HOM05D005156 ORTHO05D006710 7.0e-134 481.1 333 75.1
Haze_23195 Corylus avellana HOM05D005156 ORTHO05D006710 1.2e-133 480.3 348 74.1
TPR.G34160 Trifolium pratense HOM05D005156 ORTHO05D006710 1.7e-132 476.5 337 73.0
AL1G58170 Arabidopsis lyrata HOM05D005156 ORTHO05D006710 8.6e-132 474.2 330 73.3
Phvul.011G080400 Phaseolus vulgaris HOM05D005156 ORTHO05D006710 5.6e-131 471.5 335 71.6
AUR62000172 Chenopodium quinoa HOM05D005156 ORTHO05D006710 7.3e-131 471.1 337 72.1
Carub.0001s3958 Capsella rubella HOM05D005156 ORTHO05D006710 9.5e-131 470.7 330 73.0
Cc01_g05890 Coffea canephora HOM05D005156 ORTHO05D006710 2.8e-130 469.2 314 76.1
ECA238G2265 Erigeron canadensis HOM05D005156 ORTHO05D006710 3.6e-130 468.8 340 70.6
CARHR040540 Cardamine hirsuta HOM05D005156 ORTHO05D006710 1.1e-129 467.2 330 72.1
AT1G50510 Arabidopsis thaliana HOM05D005156 ORTHO05D006710 5.2e-129 464.9 330 71.8
BcaB02g11155 Brassica carinata HOM05D005156 ORTHO05D006710 5.2e-129 464.9 328 71.0
BcaC05g27410 Brassica carinata HOM05D005156 ORTHO05D006710 6.8e-129 464.5 330 70.9
Manes.15G112800 Manihot esculenta HOM05D005156 ORTHO05D006710 6.8e-129 464.5 278 83.8
unitig_90.g27461 Utricularia gibba HOM05D005156 ORTHO05D006710 8.9e-129 464.2 333 73.6
THA.LOC104804468 Tarenaya hassleriana HOM05D005156 ORTHO05D006710 1.2e-128 463.8 331 71.6
Nitab4.5_0006419g0030 Nicotiana tabacum HOM05D005156 ORTHO05D006710 1.5e-128 463.4 343 72.6
Thhalv10011639m.g Eutrema salsugineum HOM05D005156 ORTHO05D006710 2.0e-128 463.0 330 70.9
BcaB07g33488 Brassica carinata HOM05D005156 ORTHO05D006710 2.6e-128 462.6 330 71.2
BcaC08g43222 Brassica carinata HOM05D005156 ORTHO05D006710 3.4e-128 462.2 330 70.6
MELO3C015153.2 Cucumis melo HOM05D005156 ORTHO05D006710 3.4e-128 462.2 319 74.6
Hund21990 Selenicereus undatus HOM05D005156 ORTHO05D006710 4.4e-128 461.8 323 74.0
FAN21G2369 Fragaria x ananassa HOM05D005156 ORTHO05D006710 5.8e-128 461.5 331 71.9
Sed0002302 Sechium edule HOM05D005156 ORTHO05D006710 5.8e-128 461.5 336 73.5
FAN11G0102 Fragaria x ananassa HOM05D005156 ORTHO05D006710 9.8e-128 460.7 331 71.9
A05p20090 Brassica napus HOM05D005156 ORTHO05D006710 1.7e-127 459.9 332 70.8
BraA05t20917Z Brassica rapa HOM05D005156 ORTHO05D006710 1.7e-127 459.9 332 70.8
Psat7g227760 Pisum sativum HOM05D005156 ORTHO05D006710 2.9e-127 459.1 337 71.5
PGSC0003DMG400019760 Solanum tuberosum HOM05D005156 ORTHO05D006710 3.7e-127 458.8 335 71.6
HPP92_001936 Vanilla planifolia HOM05D005156 ORTHO05D006710 3.7e-127 458.8 339 70.5
AUR62039839 Chenopodium quinoa HOM05D005156 ORTHO05D006710 4.9e-127 458.4 367 67.0
CAN.G1323.2 Capsicum annuum HOM05D005156 ORTHO05D006710 6.4e-127 458.0 338 71.0
C05p33580 Brassica napus HOM05D005156 ORTHO05D006710 8.3e-127 457.6 332 70.2
BraA06t23519Z Brassica rapa HOM05D005156 ORTHO05D006710 8.3e-127 457.6 332 70.5
FAN25G0057 Fragaria x ananassa HOM05D005156 ORTHO05D006710 8.3e-127 457.6 331 71.0
ATR0751G133 Amborella trichopoda HOM05D005156 ORTHO05D006710 1.9e-126 456.4 301 76.7
Solyc11g033260.2 Solanum lycopersicum HOM05D005156 ORTHO05D006710 2.4e-126 456.1 334 71.6
VMungo1383G1089 Vigna mungo HOM05D005156 ORTHO05D006710 2.4e-126 456.1 344 69.5
Sopen11g015730 Solanum pennellii HOM05D005156 ORTHO05D006710 9.2e-126 454.1 336 71.1
Sabra16G0154700 Salix brachista HOM05D005156 ORTHO05D006710 1.7e-124 449.9 318 74.8
arahy.Tifrunner.gnm1.ann1.KCM926 Arachis hypogaea HOM05D005156 ORTHO05D006710 3.0e-124 449.1 334 72.5
arahy.Tifrunner.gnm1.ann1.9TL5ZW Arachis hypogaea HOM05D005156 ORTHO05D006710 1.5e-123 446.8 334 72.2
Rhsim13G0216600 Rhododendron simsii HOM05D005156 ORTHO05D006710 1.9e-123 446.4 353 68.6
ClCG03G012920 Citrullus lanatus HOM05D005156 ORTHO05D006710 4.3e-123 445.3 358 66.8
Ca_12758_v3 Cicer arietinum L. HOM05D005156 ORTHO05D006710 9.5e-123 444.1 366 65.3
Sp1g37360 Schrenkiella parvula HOM05D005156 ORTHO05D006710 1.6e-122 443.4 330 68.8
Peaxi162Scf00473g00218 Petunia axillaris HOM05D005156 ORTHO05D006710 2.1e-122 443.0 369 66.1
BolC5t32085H Brassica oleracea HOM05D005156 ORTHO05D006710 3.4e-120 435.6 366 63.1
vmacro04002 Vaccinium macrocarpon HOM05D005156 ORTHO05D006710 6.4e-119 431.4 403 61.3
HanXRQChr06g0183211 Helianthus annuus HOM05D005156 ORTHO05D006710 1.1e-118 430.6 311 70.1
A06p03060 Brassica napus HOM05D005156 ORTHO05D006710 1.4e-118 430.3 310 70.3
C06p05700 Brassica napus HOM05D005156 ORTHO05D006710 3.2e-118 429.1 308 69.8
Lsat_1_v5_gn_2_29420 Lactuca sativa HOM05D005156 ORTHO05D006710 4.3e-115 418.7 338 64.8
Nitab4.5_0002113g0190 Nicotiana tabacum HOM05D005156 ORTHO05D006710 2.1e-114 416.4 275 77.5
Mapoly0048s0046 Marchantia polymorpha HOM05D005156 ORTHO05D006710 8.1e-114 414.5 330 66.1
SMO147G0151 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 5.2e-113 411.8 325 65.8
Os08g0504400 Oryza sativa ssp. japonica HOM05D005156 ORTHO05D006710 1.1e-110 404.1 279 73.5
CDE12G0606 Ceratophyllum demersum HOM05D005156 ORTHO05D006710 1.4e-110 403.7 272 76.8
Lj2C655T2 Lonicera japonica HOM05D005156 ORTHO05D006710 1.4e-110 403.7 308 70.8
Aa31LG10G3780 Aethionema arabicum HOM05D005156 ORTHO05D006710 1.9e-110 403.3 298 69.8
Dinv22149 Davidia involucrata HOM05D005156 ORTHO05D006710 1.3e-108 397.1 248 81.0
Pp3c21_8650 Physcomitrium patens HOM05D005156 ORTHO05D006710 6.6e-108 394.8 334 62.6
CBR_g12801 Chara braunii HOM05D005156 ORTHO05D006710 8.1e-106 387.9 300 67.3
Aqoxy4G00402 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 1.2e-104 384.0 334 64.1
DCAR_002091 Daucus carota HOM05D005156 ORTHO05D006710 4.9e-103 378.6 305 65.2
AagrBONN_evm.TU.Sc2ySwM_368.760 Anthoceros agrestis HOM05D005156 ORTHO05D006710 1.9e-102 376.7 318 63.5
MCO15G168 Micromonas commoda HOM05D005156 ORTHO05D006710 1.2e-101 374.0 307 61.6
SHI21395 Sapria himalayana HOM05D005156 ORTHO05D006710 8.7e-100 367.9 274 69.0
Zm00001eb251060 Zea mays HOM05D005156 ORTHO05D006710 1.3e-98 364.0 246 73.2
SGA_v2.0_scaffold29G12276 Striga asiatica HOM05D005156 ORTHO05D006710 2.2e-95 353.2 213 83.6
PRCOL_00003626 Prasinoderma coloniale HOM05D005156 ORTHO05D006710 3.5e-93 345.9 299 58.5
Lj2C684T3 Lonicera japonica HOM05D005156 ORTHO05D006710 1.0e-92 344.4 235 77.4
Hma1.2p1_2309F.1_g319520 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 5.1e-92 342.0 209 81.3
MBI15_g27827_MAGBIO Magnolia biondii HOM05D005156 ORTHO05D006710 7.6e-88 328.2 202 81.2
Cre02.g144000 Chlamydomonas reinhardtii HOM05D005156 ORTHO05D006710 6.7e-84 315.1 276 59.1
Medtr4g031220 Medicago truncatula HOM05D005156 ORTHO05D006710 1.9e-83 313.5 232 69.8
SMO273G0012 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 1.0e-76 291.2 206 71.4
BcaB02g11038 Brassica carinata HOM05D005156 ORTHO05D006710 1.7e-71 273.9 199 69.3
Nn1g08054 Nelumbo nucifera HOM05D005156 ORTHO05D006710 3.2e-70 269.6 168 82.1
BcaB01g01392 Brassica carinata HOM05D005156 ORTHO05D006710 3.7e-66 256.1 199 67.3
Cfa025164 Carpinus fangiana HOM05D005156 ORTHO05D006710 6.3e-66 255.4 306 44.4
Nn1g08053 Nelumbo nucifera HOM05D005156 ORTHO05D006710 4.8e-50 202.6 150 72.0
Haze_26247 Corylus avellana HOM05D005156 ORTHO05D006710 1.1e-46 191.4 280 41.8
COL.COLO4_04116 Corchorus olitorius HOM05D005156 ORTHO05D006710 4.0e-44 183.0 141 66.0
Medtr4g031235 Medicago truncatula HOM05D005156 ORTHO05D006710 3.4e-35 153.3 104 73.1
EL10Ac8g19800 Beta vulgaris HOM05D005156 ORTHO05D006710 2.3e-28 130.6 108 62.0
Aqoxy1G04277 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 7.5e-27 125.6 99 68.7
SMO147G0118 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 8.3e-26 122.1 246 37.4
ATR0585G005 Amborella trichopoda HOM05D005156 ORTHO05D006710 2.0e-24 117.5 92 66.3
Oeu016690.1 Olea europaea HOM05D005156 ORTHO05D006710 7.8e-24 115.5 99 59.6
SalBow6G0988 Salvia bowleyana HOM05D005156 ORTHO05D006710 1.1e-22 111.7 79 67.1
SMO164G0249 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 1.1e-22 111.7 118 57.6
EL10Ac3g06833 Beta vulgaris HOM05D005156 ORTHO05D006710 4.4e-19 99.8 81 55.6
EL10Ac2g04378 Beta vulgaris HOM05D005156 ORTHO05D006710 2.2e-18 97.4 82 54.9
MELO3C033715.2 Cucumis melo HOM05D005156 ORTHO05D006710 2.2e-18 97.4 61 77.0
MELO3C034160.2 Cucumis melo HOM05D005156 ORTHO05D006710 2.2e-18 97.4 62 77.4
MELO3C030656.2 Cucumis melo HOM05D005156 ORTHO05D006710 2.9e-18 97.1 62 79.0
SEGI_37101 Sequoiadendron giganteum HOM05D005156 ORTHO05D006710 3.7e-18 96.7 93 55.9
MELO3C034654.2 Cucumis melo HOM05D005156 ORTHO05D006710 6.4e-18 95.9 62 79.0
SMO147G0310 Selaginella moellendorffii HOM05D000066 ORTHO05D373802 2.7e-16 90.5 88 53.4
MELO3C030457.2 Cucumis melo HOM05D005156 ORTHO05D006710 3.5e-16 90.1 58 81.0
MELO3C016526.2 Cucumis melo HOM05D005156 ORTHO05D006710 1.7e-15 87.8 55 81.8
Hma1.2p1_1115F.1_g258870 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 6.4e-10 69.3 37 78.4
EL10Ac2g02892 Beta vulgaris HOM05D005156 ORTHO05D039042 2.4e-09 67.4 42 76.2
Rhsim05G0077000 Rhododendron simsii HOM05D003003 ORTHO05D008343 1.2e-08 65.1 40 82.5
EL10As2g23197 Beta vulgaris HOM05D005156 ORTHO05D039042 1.6e-08 64.7 46 71.7
EL10Ac8g20129 Beta vulgaris HOM05D005156 ORTHO05D000004 2.7e-08 63.9 38 78.9
EL10Ac9g22728 Beta vulgaris HOM05D005156 ORTHO05D000004 3.5e-08 63.5 35 85.7
SMO147G0023 Selaginella moellendorffii HOM05D005156 ORTHO05D376049 1.1e-06 58.5 123 34.1
Rhsim07G0166700 Rhododendron simsii HOM05D005156 ORTHO05D050672 2.5e-06 57.4 69 44.9


User provided reference genes

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