Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J00346 Eucalyptus grandis HOM05D002707 ORTHO05D002925 8.4e-65 250.4 141 100.0
Eucgr.J00344 Eucalyptus grandis HOM05D002707 ORTHO05D002925 2.7e-55 218.8 130 86.9
COL.COLO4_33121 Corchorus olitorius HOM05D002707 ORTHO05D002925 4.5e-34 148.3 128 59.4
A10p28140 Brassica napus HOM05D002707 ORTHO05D002925 1.9e-32 142.9 132 56.8
CANSAT78G0823 Cannabis sativa HOM05D002707 ORTHO05D002925 1.6e-31 139.8 135 55.6
TAR629G2454 Trochodendron aralioides HOM05D002707 ORTHO05D002925 2.7e-31 139.0 128 57.8
C09p68350 Brassica napus HOM05D002707 ORTHO05D002925 6.7e-30 134.4 131 54.2
BolC9t59582H Brassica oleracea HOM05D002707 ORTHO05D002925 6.7e-30 134.4 131 54.2
CARHR204380 Cardamine hirsuta HOM05D002707 ORTHO05D002925 8.7e-30 134.0 142 53.5
BraA10t44863Z Brassica rapa HOM05D002707 ORTHO05D002925 2.8e-28 129.0 129 53.5
Potri.007G076300 Populus trichocarpa HOM05D002707 ORTHO05D002925 2.8e-28 129.0 126 54.0
TWI74G0128 Tripterygium wilfordii HOM05D002707 ORTHO05D002925 4.8e-28 128.3 128 53.9
PSO782G4858 Papaver somniferum HOM05D002707 ORTHO05D002925 6.3e-28 127.9 143 49.7
Solyc02g150120.1 Solanum lycopersicum HOM05D002707 ORTHO05D002925 5.3e-27 124.8 128 53.1
Sopen02g008710 Solanum pennellii HOM05D002707 ORTHO05D002925 5.3e-27 124.8 128 53.9
Duzib052G0594 Durio zibethinus HOM05D002707 ORTHO05D002925 6.9e-27 124.4 128 51.6
PSO063G4385 Papaver somniferum HOM05D002707 ORTHO05D002925 6.9e-27 124.4 143 49.0
MD13G1002500 Malus domestica HOM05D002707 ORTHO05D002925 2.0e-26 122.9 123 53.7
SHI21188 Sapria himalayana HOM05D002707 ORTHO05D002925 2.0e-26 122.9 137 49.6
Gohir.A03G167200 Gossypium hirsutum HOM05D002707 ORTHO05D002925 2.6e-26 122.5 128 52.3
Gohir.D02G190300 Gossypium hirsutum HOM05D002707 ORTHO05D002925 2.6e-26 122.5 128 52.3
Gorai.005G213000 Gossypium raimondii HOM05D002707 ORTHO05D002925 2.6e-26 122.5 128 52.3
Glyma.20G101700 Glycine max HOM05D002707 ORTHO05D002925 5.9e-26 121.3 128 52.3
THA.LOC104818403 Tarenaya hassleriana HOM05D002707 ORTHO05D002925 1.0e-25 120.6 131 50.4
Sc21g0003790 Simmondsia chinensis HOM05D002707 ORTHO05D002925 2.2e-25 119.4 157 47.8
Phvul.007G013600 Phaseolus vulgaris HOM05D002707 ORTHO05D002925 8.5e-25 117.5 128 50.8
EL10Ac9g22990 Beta vulgaris HOM05D002707 ORTHO05D002925 1.4e-24 116.7 150 46.7
DCAR_023484 Daucus carota HOM05D002707 ORTHO05D002925 1.4e-24 116.7 128 50.0
Duzib132G0358 Durio zibethinus HOM05D002707 ORTHO05D002925 1.9e-24 116.3 128 50.0
Thecc.02G154000 Theobroma cacao HOM05D002707 ORTHO05D002925 3.2e-24 115.5 128 50.8
AUR62017738 Chenopodium quinoa HOM05D002707 ORTHO05D002925 7.2e-24 114.4 163 42.9
Sabra07G0064300 Salix brachista HOM05D002707 ORTHO05D002925 7.2e-24 114.4 126 51.6
VMungo0720G1527 Vigna mungo HOM05D002707 ORTHO05D002925 7.2e-24 114.4 130 49.2
Actinidia04358 Actinidia chinensis HOM05D002707 ORTHO05D002925 9.4e-24 114.0 130 50.8
Ah.01g012000 Amaranthus hybridus HOM05D002707 ORTHO05D002925 9.4e-24 114.0 160 45.0
Nn3g18570 Nelumbo nucifera HOM05D002707 ORTHO05D002925 1.2e-23 113.6 136 55.9
CDE05G1371 Ceratophyllum demersum HOM05D002707 ORTHO05D002925 2.7e-23 112.5 130 49.2
Potri.005G087600 Populus trichocarpa HOM05D002707 ORTHO05D002925 2.7e-23 112.5 70 71.4
AUR62032934 Chenopodium quinoa HOM05D002707 ORTHO05D002925 3.6e-23 112.1 162 43.8
Oeu006338.1 Olea europaea HOM05D002707 ORTHO05D002925 4.6e-23 111.7 76 67.1
QL01p000822 Quercus lobata HOM05D002707 ORTHO05D002925 4.6e-23 111.7 73 69.9
Glyma.10G287600 Glycine max HOM05D002707 ORTHO05D002925 6.1e-23 111.3 128 49.2
CAN.G187.3 Capsicum annuum HOM05D002707 ORTHO05D002925 7.9e-23 110.9 129 49.6
Duzib248G1528 Durio zibethinus HOM05D002707 ORTHO05D002925 1.4e-22 110.2 128 48.4
Nitab4.5_0000146g0100 Nicotiana tabacum HOM05D002707 ORTHO05D002925 1.8e-22 109.8 128 50.0
CiPaw.15G001600 Carya illinoinensis HOM05D002707 ORTHO05D002925 2.3e-22 109.4 72 68.1
Dinv01364 Davidia involucrata HOM05D002707 ORTHO05D002925 2.3e-22 109.4 72 72.2
TWI53G0888 Tripterygium wilfordii HOM05D002707 ORTHO05D002925 3.0e-22 109.0 128 49.2
ClCG01G008040 Citrullus lanatus HOM05D002707 ORTHO05D002925 1.5e-21 106.7 71 69.0
Lalb_Chr10g0094771 Lupinus albus HOM05D002707 ORTHO05D002925 2.0e-21 106.3 130 46.9
Sabra05G0072400 Salix brachista HOM05D002707 ORTHO05D002925 2.0e-21 106.3 70 68.6
Aa31LG3G17940 Aethionema arabicum HOM05D002707 ORTHO05D002925 3.3e-21 105.5 142 43.7
Haze_17410 Corylus avellana HOM05D002707 ORTHO05D002925 4.4e-21 105.1 128 44.5
Haze_17421 Corylus avellana HOM05D002707 ORTHO05D002925 4.4e-21 105.1 128 44.5
Lj6A712T60 Lonicera japonica HOM05D002707 ORTHO05D002925 4.4e-21 105.1 68 70.6
Lj6P707G42 Lonicera japonica HOM05D002707 ORTHO05D002925 4.4e-21 105.1 68 70.6
Cpa.g.sc138.13 Carica papaya HOM05D002707 ORTHO05D002925 9.7e-21 104.0 126 49.2
MELO3C005073.2 Cucumis melo HOM05D002707 ORTHO05D002925 1.7e-20 103.2 71 64.8
Gohir.D13G059600 Gossypium hirsutum HOM05D002707 ORTHO05D002925 1.7e-20 103.2 128 46.9
Gorai.013G067400 Gossypium raimondii HOM05D002707 ORTHO05D002925 1.7e-20 103.2 128 46.9
RcHm_v2.0_Chr4g0447021 Rosa chinensis HOM05D002707 ORTHO05D002925 1.7e-20 103.2 128 46.9
CsaV3_UNG101750 Cucumis sativus L. HOM05D002707 ORTHO05D002925 2.8e-20 102.4 71 64.8
CsaV3_UNG110810 Cucumis sativus L. HOM05D002707 ORTHO05D002925 2.8e-20 102.4 71 64.8
Nitab4.5_0003448g0050 Nicotiana tabacum HOM05D002707 ORTHO05D002925 2.8e-20 102.4 128 48.4
Gohir.A13G062300 Gossypium hirsutum HOM05D002707 ORTHO05D002925 3.7e-20 102.1 128 46.9
RhsimUnG0102900 Rhododendron simsii HOM05D002707 ORTHO05D002925 2.4e-19 99.4 128 46.1
Thhalv10013753m.g Eutrema salsugineum HOM05D002707 ORTHO05D002925 4.1e-19 98.6 142 42.3
SGA_v2.0_scaffold65G22200 Striga asiatica HOM05D002707 ORTHO05D002925 6.9e-19 97.8 72 63.9
CsaV3_5G021810 Cucumis sativus L. HOM05D002707 ORTHO05D002925 1.2e-18 97.1 73 58.9
BcaB08g37242 Brassica carinata HOM05D002707 ORTHO05D002925 1.5e-18 96.7 131 43.5
BolC3t12978H Brassica oleracea HOM05D002707 ORTHO05D002925 3.4e-18 95.5 135 42.2
Manes.11G001200 Manihot esculenta HOM05D002707 ORTHO05D002925 5.9e-18 94.7 129 42.6
HPP92_022906 Vanilla planifolia HOM05D002707 ORTHO05D002925 5.9e-18 94.7 128 44.5
Medtr1g115135 Medicago truncatula HOM05D002707 ORTHO05D002925 7.7e-18 94.4 127 44.9
Cfa018658 Carpinus fangiana HOM05D002707 ORTHO05D002925 1.0e-17 94.0 93 50.5
Sp6g34280 Schrenkiella parvula HOM05D002707 ORTHO05D002925 1.3e-17 93.6 110 50.0
C03p04470 Brassica napus HOM05D002707 ORTHO05D002925 3.8e-17 92.0 135 41.5
A03p04000 Brassica napus HOM05D002707 ORTHO05D002925 5.0e-17 91.7 134 40.3
BcaB01g05580 Brassica carinata HOM05D002707 ORTHO05D002925 6.5e-17 91.3 129 39.5
BcaB01g05653 Brassica carinata HOM05D002707 ORTHO05D002925 6.5e-17 91.3 135 40.0
HanXRQChr06g0171571 Helianthus annuus HOM05D002707 ORTHO05D002925 6.5e-17 91.3 129 45.7
AL6G19310 Arabidopsis lyrata HOM05D002707 ORTHO05D002925 8.5e-17 90.9 94 53.2
AT5G08580 Arabidopsis thaliana HOM05D002707 ORTHO05D002925 1.9e-16 89.7 94 53.2
ATR0789G152 Amborella trichopoda HOM05D002707 ORTHO05D002925 4.2e-16 88.6 128 44.5
Ca_11269_v3 Cicer arietinum L. HOM05D002707 ORTHO05D002925 4.2e-16 88.6 128 44.5
Aqoxy3G04309 Aquilegia oxysepala HOM05D002707 ORTHO05D002925 5.5e-16 88.2 114 45.6
Ciclev10031861m.g Citrus clementina HOM05D002707 ORTHO05D002925 5.5e-16 88.2 128 40.6
arahy.Tifrunner.gnm1.ann1.L3CNX8 Arachis hypogaea HOM05D002707 ORTHO05D002925 7.2e-16 87.8 129 51.2
Carub.0006s0755 Capsella rubella HOM05D002707 ORTHO05D002925 1.6e-15 86.7 94 52.1
HanXRQChr04g0099281 Helianthus annuus HOM05D002707 ORTHO05D002925 2.1e-15 86.3 131 41.2
MSTRG.13672 Avicennia marina HOM05D002707 ORTHO05D002925 2.7e-15 85.9 68 54.4
Sed0023629 Sechium edule HOM05D002707 ORTHO05D002925 3.6e-15 85.5 128 45.3
DCAR_026877 Daucus carota HOM05D002707 ORTHO05D002925 4.7e-15 85.1 70 58.6
Migut.E00674 Erythranthe guttata HOM05D002707 ORTHO05D002925 4.7e-15 85.1 68 60.3
Hma1.2p1_0413F.1_g147390 Hydrangea macrophylla HOM05D002707 ORTHO05D002925 1.4e-14 83.6 70 60.0
PGSC0003DMG400003301 Solanum tuberosum HOM05D002707 ORTHO05D010217 1.4e-14 83.6 90 50.0
MBI01_g20331_MAGBIO Magnolia biondii HOM05D002707 ORTHO05D002925 2.3e-14 82.8 129 38.8
MSTRG.2074 Avicennia marina HOM05D002707 ORTHO05D002925 2.0e-13 79.7 72 54.2
BraA03t09743Z Brassica rapa HOM05D002707 ORTHO05D002925 2.0e-13 79.7 134 37.3
Psat0s2189g0080 Pisum sativum HOM05D002707 ORTHO05D002925 4.4e-13 78.6 128 40.6
Prupe.1G349900 Prunus persica HOM05D002707 ORTHO05D002925 9.7e-13 77.4 123 39.0
arahy.Tifrunner.gnm1.ann1.RRWC6P Arachis hypogaea HOM05D002707 ORTHO05D002925 1.8e-11 73.2 67 53.7
SalBow2G2796 Salvia bowleyana HOM05D002707 ORTHO05D002925 3.1e-11 72.4 68 51.5
FAN07G2687 Fragaria x ananassa HOM05D002707 ORTHO05D002925 4.1e-11 72.0 71 47.9
Lsat_1_v5_gn_9_102941 Lactuca sativa HOM05D002707 ORTHO05D002925 4.1e-11 72.0 108 42.6
Hund08672 Selenicereus undatus HOM05D002707 ORTHO05D002925 5.3e-11 71.6 98 38.8
GSVIVG01034380001 Vitis vinifera HOM05D002707 ORTHO05D002925 7.0e-11 71.2 128 38.3
FvH4_4g37230 Fragaria vesca HOM05D002707 ORTHO05D002925 1.6e-10 70.1 128 37.5
Peaxi162Scf00268g01424 Petunia axillaris HOM05D002707 ORTHO05D002925 2.6e-10 69.3 133 36.1
MELO3C011760.2 Cucumis melo HOM05D002707 ORTHO05D002925 3.5e-10 68.9 127 33.9
TPR.G4110 Trifolium pratense HOM05D002707 ORTHO05D002925 3.5e-10 68.9 130 38.5
Lsat_1_v5_gn_3_35260 Lactuca sativa HOM05D002707 ORTHO05D002925 5.9e-10 68.2 88 46.6
THA.LOC104819359 Tarenaya hassleriana HOM05D002707 ORTHO05D002925 1.0e-09 67.4 99 45.5
unitig_699.g19639 Utricularia gibba HOM05D002669 ORTHO05D003001 8.5e-09 64.3 68 42.6
MD00G1127000 Malus domestica HOM05D002707 ORTHO05D002925 3.2e-08 62.4 69 43.5
Pp3c23_22490 Physcomitrium patens HOM05D002707 ORTHO05D002925 1.6e-07 60.1 141 31.2
Os02g0221800 Oryza sativa ssp. japonica HOM05D002707 ORTHO05D002925 3.6e-07 58.9 83 42.2
Lj5g0021572 Lotus japonicus HOM05D002707 ORTHO05D002925 3.0e-06 55.8 73 41.1
CDE05G3050 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 4.0e-06 55.5 73 39.7
ClCG02G014220 Citrullus lanatus HOM05D002707 ORTHO05D002925 5.2e-06 55.1 68 36.8
CsaV3_5G029090 Cucumis sativus L. HOM05D002707 ORTHO05D002925 5.2e-06 55.1 126 27.8
SMO115G0197 Selaginella moellendorffii HOM05D002707 ORTHO05D002925 5.2e-06 55.1 127 34.6
Atru.chr11.1263 Acer truncatum HOM05D002707 ORTHO05D002925 6.7e-06 54.7 72 41.7


User provided reference genes

Program Settings