Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I02798 Eucalyptus grandis HOM05D005319 ORTHO05D006632 0.0e+00 1382.5 726 100.0
Manes.07G031200 Manihot esculenta HOM05D005319 ORTHO05D006632 3.5e-255 885.2 657 66.4
Hma1.2p1_0052F.1_g030050 Hydrangea macrophylla HOM05D005319 ORTHO05D006632 3.0e-251 872.1 660 64.7
TAR628G0438 Trochodendron aralioides HOM05D005319 ORTHO05D006632 1.1e-245 853.6 661 64.6
PGR142G1786 Punica granatum HOM05D005319 ORTHO05D006632 3.6e-244 848.6 657 64.2
CSS0036760 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 4.7e-244 848.2 662 63.4
Atru.chr6.211 Acer truncatum HOM05D005319 ORTHO05D006632 5.4e-240 834.7 662 61.2
Ciclev10000238m.g Citrus clementina HOM05D005319 ORTHO05D006632 1.2e-239 833.6 682 60.7
Potri.004G229732 Populus trichocarpa HOM05D005319 ORTHO05D006632 2.0e-239 832.8 656 63.0
CSS0030211 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 4.5e-239 831.6 658 63.2
Cfa004432 Carpinus fangiana HOM05D005319 ORTHO05D006632 4.5e-239 831.6 657 63.6
Medtr8g015930 Medicago truncatula HOM05D005319 ORTHO05D006632 3.8e-238 828.6 660 62.1
vmacro19823 Vaccinium macrocarpon HOM05D005319 ORTHO05D006632 3.6e-236 822.0 683 60.6
arahy.Tifrunner.gnm1.ann1.2TW5YI Arachis hypogaea HOM05D005319 ORTHO05D006632 8.0e-236 820.8 657 62.3
Sed0027556 Sechium edule HOM05D005319 ORTHO05D006632 8.0e-236 820.8 658 62.2
QL02p103594 Quercus lobata HOM05D005319 ORTHO05D006632 2.3e-235 819.3 667 62.2
Lj5g0014697 Lotus japonicus HOM05D005319 ORTHO05D006632 1.2e-234 817.0 662 61.3
MSTRG.16462 Avicennia marina HOM05D005319 ORTHO05D006632 2.6e-234 815.8 656 60.5
VMungo1127G0564 Vigna mungo HOM05D005319 ORTHO05D006632 2.6e-234 815.8 659 61.2
TPR.G5958 Trifolium pratense HOM05D005319 ORTHO05D006632 4.9e-233 811.6 663 61.5
Glyma.12G164200 Glycine max HOM05D005319 ORTHO05D006632 3.1e-232 808.9 658 60.8
Haze_09972 Corylus avellana HOM05D005319 ORTHO05D006632 4.1e-232 808.5 663 62.6
Glyma.16G000500 Glycine max HOM05D005319 ORTHO05D006632 1.6e-231 806.6 658 61.2
Phvul.006G221600 Phaseolus vulgaris HOM05D005319 ORTHO05D006632 2.0e-231 806.2 658 59.9
CsaV3_5G027480 Cucumis sativus L. HOM05D005319 ORTHO05D006632 2.7e-231 805.8 649 62.1
Psat1g223960 Pisum sativum HOM05D005319 ORTHO05D006632 3.5e-231 805.4 658 60.8
Rhsim05G0118000 Rhododendron simsii HOM05D005319 ORTHO05D006632 4.3e-229 798.5 657 60.9
TWI59G0928 Tripterygium wilfordii HOM05D005319 ORTHO05D006632 1.6e-228 796.6 660 60.0
Prupe.1G586100 Prunus persica HOM05D005319 ORTHO05D006632 3.4e-226 788.9 660 60.2
ClCG11G000090 Citrullus lanatus HOM05D005319 ORTHO05D006632 2.9e-225 785.8 650 61.4
Lalb_Chr18g0061161 Lupinus albus HOM05D005319 ORTHO05D006632 2.9e-225 785.8 654 62.1
MD08G1248800 Malus domestica HOM05D005319 ORTHO05D006632 4.9e-225 785.0 657 60.4
MD15G1443600 Malus domestica HOM05D005319 ORTHO05D006632 1.1e-224 783.9 657 60.6
Thecc.06G020300 Theobroma cacao HOM05D005319 ORTHO05D006632 3.2e-224 782.3 652 60.4
Actinidia26200 Actinidia chinensis HOM05D005319 ORTHO05D006632 5.4e-224 781.6 660 59.7
RcHm_v2.0_Chr7g0219031 Rosa chinensis HOM05D005319 ORTHO05D006632 1.2e-223 780.4 656 59.5
MELO3C022920.2 Cucumis melo HOM05D005319 ORTHO05D006632 2.0e-223 779.6 629 62.3
CANSAT01G0698 Cannabis sativa HOM05D005319 ORTHO05D006632 3.5e-223 778.9 658 59.9
CAN.G855.58 Capsicum annuum HOM05D005319 ORTHO05D006632 6.6e-222 774.6 661 59.2
Duzib192G0868 Durio zibethinus HOM05D005319 ORTHO05D006632 6.6e-222 774.6 656 60.1
Lj5A285G49 Lonicera japonica HOM05D005319 ORTHO05D006632 6.6e-222 774.6 693 58.2
FvH4_5g27610 Fragaria vesca HOM05D005319 ORTHO05D006632 7.3e-221 771.2 656 59.1
Solyc01g102970.3 Solanum lycopersicum HOM05D005319 ORTHO05D006632 8.0e-220 767.7 664 59.9
SGA_v2.0_scaffold254G45232 Striga asiatica HOM05D005319 ORTHO05D006632 8.0e-220 767.7 660 57.1
Nn5g27146 Nelumbo nucifera HOM05D005319 ORTHO05D006632 3.1e-219 765.8 657 58.6
Nitab4.5_0003247g0020 Nicotiana tabacum HOM05D005319 ORTHO05D006632 4.0e-219 765.4 665 58.5
Sabra01G0174900 Salix brachista HOM05D005319 ORTHO05D006632 4.0e-219 765.4 626 61.0
Nn4g24765 Nelumbo nucifera HOM05D005319 ORTHO05D006632 5.2e-219 765.0 657 58.4
Gohir.D05G110000 Gossypium hirsutum HOM05D005319 ORTHO05D006632 2.9e-217 759.2 656 58.4
Gorai.011G090800 Gossypium raimondii HOM05D005319 ORTHO05D006632 3.7e-217 758.8 655 58.6
Gorai.009G114100 Gossypium raimondii HOM05D005319 ORTHO05D006632 1.1e-216 757.3 656 58.2
Sopen01g045380 Solanum pennellii HOM05D005319 ORTHO05D006632 1.9e-216 756.5 664 58.9
Gohir.A05G109700 Gossypium hirsutum HOM05D005319 ORTHO05D006632 2.4e-216 756.1 656 58.4
THA.LOC104806623 Tarenaya hassleriana HOM05D005319 ORTHO05D006632 1.0e-214 750.7 658 57.6
Nitab4.5_0005164g0040 Nicotiana tabacum HOM05D005319 ORTHO05D006632 2.3e-214 749.6 651 58.2
Gohir.D10G083500 Gossypium hirsutum HOM05D005319 ORTHO05D006632 1.9e-213 746.5 656 58.4
Sc12g0006940 Simmondsia chinensis HOM05D005319 ORTHO05D006632 9.5e-213 744.2 660 58.2
Cc02_g23690 Coffea canephora HOM05D005319 ORTHO05D006632 1.1e-211 740.7 652 57.7
Peaxi162Scf00011g02012 Petunia axillaris HOM05D005319 ORTHO05D006632 2.0e-210 736.5 665 57.6
GSVIVG01023136001 Vitis vinifera HOM05D005319 ORTHO05D006632 2.0e-210 736.5 661 58.5
COL.COLO4_31114 Corchorus olitorius HOM05D005319 ORTHO05D006632 7.1e-208 728.0 652 56.3
Dinv29683 Davidia involucrata HOM05D005319 ORTHO05D006632 1.6e-207 726.9 539 65.5
FAN18G0588 Fragaria x ananassa HOM05D005319 ORTHO05D006632 3.3e-205 719.2 666 55.4
FAN13G2205 Fragaria x ananassa HOM05D005319 ORTHO05D006632 9.5e-205 717.6 666 55.6
HanXRQChr03g0090101 Helianthus annuus HOM05D005319 ORTHO05D006632 1.1e-203 714.1 675 55.0
Thhalv10024416m.g Eutrema salsugineum HOM05D005319 ORTHO05D006632 1.2e-202 710.7 657 55.7
Aqoxy6G00019 Aquilegia oxysepala HOM05D005319 ORTHO05D006632 1.5e-202 710.3 670 53.4
AUR62042963 Chenopodium quinoa HOM05D005319 ORTHO05D006632 2.6e-202 709.5 657 56.6
unitig_8.g2963 Utricularia gibba HOM05D005319 ORTHO05D006632 1.9e-200 703.4 658 52.9
PSO170G3892 Papaver somniferum HOM05D005319 ORTHO05D006632 4.6e-199 698.7 663 53.8
PSO017G2844 Papaver somniferum HOM05D005319 ORTHO05D006632 1.0e-198 697.6 666 54.1
Migut.B00712 Erythranthe guttata HOM05D005319 ORTHO05D006632 2.3e-198 696.4 557 59.4
ECA240G4281 Erigeron canadensis HOM05D005319 ORTHO05D006632 1.1e-197 694.1 664 54.2
AUR62041124 Chenopodium quinoa HOM05D005319 ORTHO05D006632 1.5e-197 693.7 699 53.9
BcaC09g50887 Brassica carinata HOM05D005319 ORTHO05D006632 2.5e-197 693.0 656 54.0
Sp7g22260 Schrenkiella parvula HOM05D005319 ORTHO05D006632 9.6e-197 691.0 655 54.8
C01p19580 Brassica napus HOM05D005319 ORTHO05D006632 8.9e-195 684.5 656 53.7
BcaNung01135 Brassica carinata HOM05D005319 ORTHO05D006632 2.6e-194 682.9 657 53.1
BolC1t01883H Brassica oleracea HOM05D005319 ORTHO05D006632 4.4e-194 682.2 656 53.7
Carub.0007s1678 Capsella rubella HOM05D005319 ORTHO05D006632 4.4e-194 682.2 656 54.0
BraA01t01501Z Brassica rapa HOM05D005319 ORTHO05D006632 7.6e-194 681.4 660 53.6
Aa31LG7G10320 Aethionema arabicum HOM05D005319 ORTHO05D006632 2.2e-193 679.9 670 53.4
CiPaw.05G159300 Carya illinoinensis HOM05D005319 ORTHO05D006632 2.2e-193 679.9 480 67.3
CDE07G1780 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 3.8e-193 679.1 674 51.8
A01p15600 Brassica napus HOM05D005319 ORTHO05D006632 8.4e-193 677.9 656 53.4
FAN04G2290 Fragaria x ananassa HOM05D005319 ORTHO05D006632 8.4e-193 677.9 656 54.3
Cpa.g.sc173.4 Carica papaya HOM05D005319 ORTHO05D006632 2.4e-192 676.4 626 55.4
CARHR231700 Cardamine hirsuta HOM05D005319 ORTHO05D006632 2.7e-191 672.9 656 51.8
AL7G28980 Arabidopsis lyrata HOM05D005319 ORTHO05D006632 6.0e-191 671.8 656 53.4
AT4G24270 Arabidopsis thaliana HOM05D005319 ORTHO05D006632 5.6e-189 665.2 652 53.5
HPP92_001202 Vanilla planifolia HOM05D005319 ORTHO05D006632 9.3e-184 647.9 668 49.9
Lsat_1_v5_gn_9_125320 Lactuca sativa HOM05D005319 ORTHO05D006632 3.9e-182 642.5 675 50.5
CDE04G1013 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 8.7e-182 641.3 677 49.2
Zm00001eb260720 Zea mays HOM05D005319 ORTHO05D006632 3.6e-180 636.0 668 49.3
ATR1089G095 Amborella trichopoda HOM05D005319 ORTHO05D006632 3.0e-174 616.3 682 49.7
Os08g0113200 Oryza sativa ssp. japonica HOM05D005319 ORTHO05D006632 3.0e-174 616.3 674 49.0
Prupe.2G119000 Prunus persica HOM05D005319 ORTHO05D006632 7.4e-173 611.7 663 51.4
DCAR_003273 Daucus carota HOM05D005319 ORTHO05D006632 5.8e-170 602.1 664 49.4
SHI04989 Sapria himalayana HOM05D005319 ORTHO05D006632 3.1e-155 553.1 581 51.3
Mapoly0013s0201 Marchantia polymorpha HOM05D005319 ORTHO05D006632 4.1e-155 552.7 677 44.5
Ca_00016_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 2.0e-154 550.4 494 59.3
Pp3c2_22040 Physcomitrium patens HOM05D005319 ORTHO05D006632 2.9e-153 546.6 682 41.6
AagrBONN_evm.TU.Sc2ySwM_228.2043 Anthoceros agrestis HOM05D005319 ORTHO05D006632 2.2e-148 530.4 681 41.9
SMO367G0583 Selaginella moellendorffii HOM05D005319 ORTHO05D006632 1.4e-147 527.7 668 43.6
EL10As26g24243 Beta vulgaris HOM05D005319 ORTHO05D006632 1.9e-144 517.3 391 62.4
Gohir.A10G157900 Gossypium hirsutum HOM05D005319 ORTHO05D006632 5.2e-142 509.2 476 57.6
CBR_g44339 Chara braunii HOM05D005319 ORTHO05D006632 2.1e-135 487.3 733 38.3
MBI03_g21086_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 2.1e-127 460.7 388 56.7
Actinidia01642 Actinidia chinensis HOM05D005319 ORTHO05D006632 3.6e-119 433.3 446 50.4
Oeu043602.1 Olea europaea HOM05D005319 ORTHO05D006632 1.3e-108 398.3 423 48.7
Cre12.g546700 Chlamydomonas reinhardtii HOM05D005319 ORTHO05D006632 9.5e-88 328.9 525 36.4
ECA247G0718 Erigeron canadensis HOM05D005319 ORTHO05D006632 8.1e-87 325.9 338 53.0
C01p22600 Brassica napus HOM05D005319 ORTHO05D006632 3.1e-70 270.8 234 57.3
PGSC0003DMG400020717 Solanum tuberosum HOM05D005319 ORTHO05D006632 4.2e-67 260.4 253 55.7
MBI03_g34263_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 1.5e-64 251.9 291 50.9
Oeu043603.1 Olea europaea HOM05D005319 ORTHO05D006632 9.9e-61 239.2 329 45.3
EL10As26g24244 Beta vulgaris HOM05D005319 ORTHO05D006632 2.7e-58 231.1 287 48.1
Ca_28127_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 8.5e-44 183.0 191 48.7
PRCOL_00002327 Prasinoderma coloniale HOM05D005319 ORTHO05D006632 2.1e-34 151.8 553 24.8
Ciclev10004084m.g Citrus clementina HOM05D005319 ORTHO05D006632 1.1e-27 129.4 80 77.5
Hund15346 Selenicereus undatus HOM05D005319 ORTHO05D006632 7.2e-27 126.7 219 38.4
BcaC09g50640 Brassica carinata HOM05D005319 ORTHO05D006632 8.0e-26 123.2 213 35.7
MCO03G034 Micromonas commoda HOM05D005319 ORTHO05D006632 1.8e-25 122.1 195 36.4
SEGI_30405 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 2.8e-23 114.8 85 56.5
Lj1A1166G72 Lonicera japonica HOM05D005319 ORTHO05D006632 6.3e-23 113.6 179 40.2
SHI04988 Sapria himalayana HOM05D005319 ORTHO05D006632 1.0e-20 106.3 86 55.8
Lj1A1166G73 Lonicera japonica HOM05D005319 ORTHO05D006632 5.3e-14 84.0 186 37.6
SEGI_30773 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 9.1e-14 83.2 104 41.3
CiPaw.05G159200 Carya illinoinensis HOM05D005319 ORTHO05D006632 1.0e-12 79.7 50 74.0
Os03g0210400 Oryza sativa ssp. japonica HOM05D002279 ORTHO05D002644 5.0e-12 77.4 352 24.1
Oeu016642.3 Olea europaea HOM05D001586 ORTHO05D001543 2.1e-10 72.0 67 53.7
Psat3g055080 Pisum sativum HOM05D002279 ORTHO05D002644 5.2e-09 67.4 343 25.1
ATR0787G201 Amborella trichopoda HOM05D002279 ORTHO05D002644 8.8e-09 66.6 344 22.1
TPR.G20054 Trifolium pratense HOM05D002279 ORTHO05D002644 1.2e-08 66.2 351 25.6
SGA_v2.0_scaffold1G00650 Striga asiatica HOM05D002279 ORTHO05D002644 5.7e-08 63.9 342 23.4
HPP92_019939 Vanilla planifolia HOM05D002279 ORTHO05D002644 7.5e-08 63.5 346 23.4
MBI07_g23231_MAGBIO Magnolia biondii HOM05D002279 ORTHO05D002644 9.8e-08 63.2 345 23.8
CDE11G0963 Ceratophyllum demersum HOM05D002279 ORTHO05D002644 2.2e-07 62.0 356 24.7
Gohir.A11G133300 Gossypium hirsutum HOM05D002279 ORTHO05D002644 2.2e-07 62.0 345 24.6
MD00G1060100 Malus domestica HOM05D002279 ORTHO05D002644 3.7e-07 61.2 349 22.6
Medtr7g098430 Medicago truncatula HOM05D002279 ORTHO05D002644 3.7e-07 61.2 348 23.3
Gohir.D07G158300 Gossypium hirsutum HOM05D002279 ORTHO05D002644 1.1e-06 59.7 351 25.1
Gohir.D11G139400 Gossypium hirsutum HOM05D002279 ORTHO05D002644 1.1e-06 59.7 346 22.3
Gorai.001G181500 Gossypium raimondii HOM05D002279 ORTHO05D002644 1.4e-06 59.3 351 25.1
Hma1.2p1_0586F.1_g183745 Hydrangea macrophylla HOM05D000033 ORTHO05D000913 1.4e-06 59.3 46 54.3
Hma1.2p1_0643F.1_g194445 Hydrangea macrophylla HOM05D000033 ORTHO05D000913 1.4e-06 59.3 46 54.3
Gohir.A07G152100 Gossypium hirsutum HOM05D002279 ORTHO05D002644 3.1e-06 58.2 350 24.6
Gorai.007G149700 Gossypium raimondii HOM05D002279 ORTHO05D002644 7.0e-06 57.0 346 22.0
TWI12G1034 Tripterygium wilfordii HOM05D002279 ORTHO05D002644 9.1e-06 56.6 348 23.3


User provided reference genes

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