Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I02711 Eucalyptus grandis HOM05D004799 ORTHO05D005500 3.3e-119 431.8 232 100.0
Duzib248G0546 Durio zibethinus HOM05D004799 ORTHO05D005500 7.3e-74 281.2 227 70.0
Manes.10G132000 Manihot esculenta HOM05D004799 ORTHO05D005500 3.1e-72 275.8 228 68.0
Haze_01626 Corylus avellana HOM05D004799 ORTHO05D005500 1.2e-71 273.9 227 68.7
CiPaw.06G148900 Carya illinoinensis HOM05D004799 ORTHO05D005500 3.4e-71 272.3 232 68.1
Duzib132G0636 Durio zibethinus HOM05D004799 ORTHO05D005500 9.9e-71 270.8 231 67.5
Cfa005544 Carpinus fangiana HOM05D004799 ORTHO05D005500 3.7e-70 268.9 227 68.3
Gohir.A01G177000 Gossypium hirsutum HOM05D004799 ORTHO05D005500 1.1e-69 267.3 223 68.2
Gohir.D01G167800 Gossypium hirsutum HOM05D004799 ORTHO05D005500 1.9e-69 266.5 223 68.2
Sabra01G0161300 Salix brachista HOM05D004799 ORTHO05D005500 1.9e-69 266.5 239 64.9
Gorai.002G208500 Gossypium raimondii HOM05D004799 ORTHO05D005500 4.1e-69 265.4 223 67.7
Cpa.g.sc2.26 Carica papaya HOM05D004799 ORTHO05D005500 9.2e-69 264.2 233 65.2
GSVIVG01023017001 Vitis vinifera HOM05D004799 ORTHO05D005500 3.5e-68 262.3 233 63.9
QL02p098623 Quercus lobata HOM05D004799 ORTHO05D005500 2.3e-67 259.6 257 60.3
Dinv19352 Davidia involucrata HOM05D004799 ORTHO05D005500 6.6e-67 258.1 235 63.4
Gohir.A03G210900 Gossypium hirsutum HOM05D004799 ORTHO05D005500 8.6e-67 257.7 222 65.3
Manes.07G013800 Manihot esculenta HOM05D004799 ORTHO05D005500 1.5e-66 256.9 228 67.1
Ciclev10002345m.g Citrus clementina HOM05D004799 ORTHO05D005500 7.3e-66 254.6 236 64.8
THA.LOC104809537 Tarenaya hassleriana HOM05D004799 ORTHO05D005500 1.2e-65 253.8 233 62.2
Potri.001G209100 Populus trichocarpa HOM05D004799 ORTHO05D005500 1.6e-65 253.4 226 65.5
FAN13G3307 Fragaria x ananassa HOM05D004799 ORTHO05D005500 4.7e-65 251.9 231 64.9
FAN04G2475 Fragaria x ananassa HOM05D004799 ORTHO05D005500 8.1e-65 251.1 224 65.2
FvH4_5g30080 Fragaria vesca HOM05D004799 ORTHO05D005500 1.4e-64 250.4 231 64.9
Sopen01g046960 Solanum pennellii HOM05D004799 ORTHO05D005500 2.6e-63 246.1 233 61.4
PGSC0003DMG400023776 Solanum tuberosum HOM05D004799 ORTHO05D005500 2.6e-63 246.1 233 61.4
CiPaw.05G042800 Carya illinoinensis HOM05D004799 ORTHO05D005500 7.6e-63 244.6 273 56.8
Hma1.2p1_0217F.1_g091930 Hydrangea macrophylla HOM05D004799 ORTHO05D005500 1.3e-62 243.8 237 61.6
RcHm_v2.0_Chr7g0224271 Rosa chinensis HOM05D004799 ORTHO05D005500 1.3e-62 243.8 231 64.9
FAN18G4597 Fragaria x ananassa HOM05D004799 ORTHO05D005500 2.9e-62 242.7 240 62.5
Sabra03G0013400 Salix brachista HOM05D004799 ORTHO05D005500 3.8e-62 242.3 222 63.1
MD08G1225100 Malus domestica HOM05D004799 ORTHO05D005500 2.4e-61 239.6 226 66.8
Potri.003G021500 Populus trichocarpa HOM05D004799 ORTHO05D005500 4.1e-61 238.8 220 63.2
Gohir.D02G232500 Gossypium hirsutum HOM05D004799 ORTHO05D005500 9.2e-61 237.7 222 62.6
Lalb_Chr12g0204381 Lupinus albus HOM05D004799 ORTHO05D005500 1.2e-60 237.3 223 61.4
Carub.0001s1103 Capsella rubella HOM05D004799 ORTHO05D005500 1.6e-60 236.9 231 59.3
Thecc.02G041200 Theobroma cacao HOM05D004799 ORTHO05D005500 1.6e-60 236.9 223 61.9
ClCG09G016220 Citrullus lanatus HOM05D004799 ORTHO05D005500 2.1e-60 236.5 229 62.0
Lalb_Chr07g0185691 Lupinus albus HOM05D004799 ORTHO05D005500 4.6e-60 235.3 226 62.4
Lj5A248T74 Lonicera japonica HOM05D004799 ORTHO05D005500 1.3e-59 233.8 233 62.2
Atru.chr6.1081 Acer truncatum HOM05D004799 ORTHO05D005500 1.7e-59 233.4 228 61.8
Gorai.005G260300 Gossypium raimondii HOM05D004799 ORTHO05D005500 3.0e-59 232.6 222 61.7
Cc02_g22290 Coffea canephora HOM05D004799 ORTHO05D005500 5.1e-59 231.9 228 59.6
TAR376G0767 Trochodendron aralioides HOM05D004799 ORTHO05D005500 5.1e-59 231.9 232 59.1
TAR628G0692 Trochodendron aralioides HOM05D004799 ORTHO05D005500 1.1e-58 230.7 232 58.6
MD15G1418700 Malus domestica HOM05D004799 ORTHO05D005500 1.5e-58 230.3 231 64.1
Peaxi162Scf00011g00139 Petunia axillaris HOM05D004799 ORTHO05D005500 1.5e-58 230.3 235 59.1
Aa31LG1G3310 Aethionema arabicum HOM05D004799 ORTHO05D005500 2.5e-58 229.6 231 57.6
CsaV3_7G007080 Cucumis sativus L. HOM05D004799 ORTHO05D005500 3.3e-58 229.2 234 59.8
Migut.B00668 Erythranthe guttata HOM05D004799 ORTHO05D005500 1.2e-57 227.3 235 57.9
Sp1g10030 Schrenkiella parvula HOM05D004799 ORTHO05D005500 1.2e-57 227.3 226 58.8
MELO3C018586.2 Cucumis melo HOM05D004799 ORTHO05D005500 2.1e-57 226.5 235 60.0
CsaV3_5G024750 Cucumis sativus L. HOM05D004799 ORTHO05D005500 2.1e-57 226.5 239 59.4
arahy.Tifrunner.gnm1.ann1.ZS42GJ Arachis hypogaea HOM05D004799 ORTHO05D005500 2.8e-57 226.1 228 60.1
vmacro01776 Vaccinium macrocarpon HOM05D004799 ORTHO05D005500 2.8e-57 226.1 262 54.6
arahy.Tifrunner.gnm1.ann1.BG3XJE Arachis hypogaea HOM05D004799 ORTHO05D005500 3.6e-57 225.7 228 60.1
A08p33480 Brassica napus HOM05D004799 ORTHO05D005500 4.7e-57 225.3 226 58.4
TWI59G1038 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 1.1e-56 224.2 216 60.6
BraA08t35264Z Brassica rapa HOM05D004799 ORTHO05D005500 2.4e-56 223.0 226 58.0
C08p14470 Brassica napus HOM05D004799 ORTHO05D005500 1.5e-55 220.3 226 57.5
BcaB03g13259 Brassica carinata HOM05D004799 ORTHO05D005500 2.6e-55 219.5 226 56.6
Lj6g0003329 Lotus japonicus HOM05D004799 ORTHO05D005500 3.4e-55 219.2 222 61.3
MSTRG.27841 Avicennia marina HOM05D004799 ORTHO05D005500 4.4e-55 218.8 222 58.1
CAN.G1352.25 Capsicum annuum HOM05D004799 ORTHO05D005500 4.4e-55 218.8 229 56.8
BcaC07g38663 Brassica carinata HOM05D004799 ORTHO05D005500 1.7e-54 216.9 226 56.6
BolC8t49096H Brassica oleracea HOM05D004799 ORTHO05D005500 1.7e-54 216.9 226 56.6
DCAR_005625 Daucus carota HOM05D004799 ORTHO05D005500 1.7e-54 216.9 223 58.3
SGA_v2.0_scaffold110G31288 Striga asiatica HOM05D004799 ORTHO05D005500 8.4e-54 214.5 243 55.1
ATR0684G092 Amborella trichopoda HOM05D004799 ORTHO05D005500 1.4e-53 213.8 224 60.3
Dinv24262 Davidia involucrata HOM05D004799 ORTHO05D005500 1.9e-53 213.4 229 57.2
TWI23G0644 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 7.1e-53 211.5 228 56.6
Lsat_1_v5_gn_9_116381 Lactuca sativa HOM05D004799 ORTHO05D005500 9.3e-53 211.1 227 58.6
Nitab4.5_0010140g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 1.6e-52 210.3 225 56.9
AUR62018552 Chenopodium quinoa HOM05D004799 ORTHO05D005500 2.7e-52 209.5 223 54.3
Oeu008877.2 Olea europaea HOM05D004799 ORTHO05D005500 3.5e-52 209.1 265 50.9
FAN08G0327 Fragaria x ananassa HOM05D004799 ORTHO05D005500 6.0e-52 208.4 231 57.1
HanXRQChr03g0066881 Helianthus annuus HOM05D004799 ORTHO05D005500 6.0e-52 208.4 226 57.1
CANSAT11G1940 Cannabis sativa HOM05D004799 ORTHO05D005500 1.0e-51 207.6 235 54.9
Sed0004816 Sechium edule HOM05D004799 ORTHO05D005500 1.0e-51 207.6 231 55.8
Glyma.08G128300 Glycine max HOM05D004799 ORTHO05D005500 1.3e-51 207.2 226 56.2
Aqoxy6G00151 Aquilegia oxysepala HOM05D004799 ORTHO05D005500 1.7e-51 206.8 232 56.0
AUR62020867 Chenopodium quinoa HOM05D004799 ORTHO05D005500 1.7e-51 206.8 226 51.8
Oeu012743.2 Olea europaea HOM05D004799 ORTHO05D005500 2.3e-51 206.5 240 53.8
VMungo0251G3647 Vigna mungo HOM05D004799 ORTHO05D005500 5.1e-51 205.3 225 54.7
BcaC05g25015 Brassica carinata HOM05D004799 ORTHO05D005500 6.6e-51 204.9 227 55.5
C05p09620 Brassica napus HOM05D004799 ORTHO05D005500 6.6e-51 204.9 227 55.5
BolC5t29704H Brassica oleracea HOM05D004799 ORTHO05D005500 6.6e-51 204.9 227 55.5
Sc14g0006850 Simmondsia chinensis HOM05D004799 ORTHO05D005500 6.6e-51 204.9 232 53.9
CARHR011640 Cardamine hirsuta HOM05D004799 ORTHO05D005500 1.9e-50 203.4 227 55.5
TPR.G2141 Trifolium pratense HOM05D004799 ORTHO05D005500 4.3e-50 202.2 230 55.7
AL1G22490 Arabidopsis lyrata HOM05D004799 ORTHO05D005500 1.3e-49 200.7 226 53.1
Actinidia00218 Actinidia chinensis HOM05D004799 ORTHO05D005500 2.8e-49 199.5 236 55.5
Rhsim11G0131600 Rhododendron simsii HOM05D004799 ORTHO05D005500 8.1e-49 198.0 339 42.5
COL.COLO4_17895 Corchorus olitorius HOM05D004799 ORTHO05D005500 2.4e-48 196.4 226 53.5
A06p08020 Brassica napus HOM05D004799 ORTHO05D005500 4.0e-48 195.7 227 52.9
BraA06t24001Z Brassica rapa HOM05D004799 ORTHO05D005500 4.0e-48 195.7 227 52.9
Medtr2g007770 Medicago truncatula HOM05D004799 ORTHO05D005500 5.3e-48 195.3 226 54.9
Hund19012 Selenicereus undatus HOM05D004799 ORTHO05D005500 5.3e-48 195.3 235 52.3
CSS0024882 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 1.5e-47 193.7 186 60.2
CSS0037217 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 1.5e-47 193.7 186 60.2
unitig_26.g9556 Utricularia gibba HOM05D004799 ORTHO05D005500 7.6e-47 191.4 226 54.4
AT1G11400 Arabidopsis thaliana HOM05D004799 ORTHO05D005500 1.3e-46 190.7 222 52.7
HPP92_019221 Vanilla planifolia HOM05D004799 ORTHO05D005500 2.9e-46 189.5 226 54.0
Ah.04g149450 Amaranthus hybridus HOM05D004799 ORTHO05D005500 6.4e-46 188.3 226 53.1
Nitab4.5_0005539g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 1.1e-45 187.6 225 52.4
Psat1g220000 Pisum sativum HOM05D004799 ORTHO05D005500 1.9e-45 186.8 221 52.9
Thhalv10008698m.g Eutrema salsugineum HOM05D004799 ORTHO05D005500 2.4e-45 186.4 225 48.9
EL10Ac3g07450 Beta vulgaris HOM05D004799 ORTHO05D005500 9.3e-45 184.5 228 50.9
Glyma.05G170200 Glycine max HOM05D004799 ORTHO05D005500 2.1e-44 183.3 230 51.7
Actinidia39055 Actinidia chinensis HOM05D004799 ORTHO05D005500 7.9e-44 181.4 187 58.3
Ca_00089_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 1.8e-43 180.3 273 46.5
Ca_29928_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 1.8e-43 180.3 273 46.5
Zm00001eb011470 Zea mays HOM05D004799 ORTHO05D005500 3.9e-43 179.1 228 53.1
Lsat_1_v5_gn_7_77960 Lactuca sativa HOM05D004799 ORTHO05D005500 7.4e-42 174.9 228 53.9
Os03g0262100 Oryza sativa ssp. japonica HOM05D004799 ORTHO05D005500 1.3e-41 174.1 230 49.1
Nn5g28066 Nelumbo nucifera HOM05D004799 ORTHO05D005500 2.1e-41 173.3 188 56.4
Phvul.002G251000 Phaseolus vulgaris HOM05D004799 ORTHO05D005500 6.2e-41 171.8 220 49.1
PSO528G0257 Papaver somniferum HOM05D004799 ORTHO05D005500 1.1e-40 171.0 218 50.0
CDE02G4357 Ceratophyllum demersum HOM05D004799 ORTHO05D005500 4.9e-38 162.2 217 48.8
PSO170G0171 Papaver somniferum HOM05D004799 ORTHO05D005500 1.1e-34 151.0 231 46.8
Nn1g08619 Nelumbo nucifera HOM05D004799 ORTHO05D005500 9.6e-34 147.9 173 53.2
SalBow6G1776 Salvia bowleyana HOM05D004799 ORTHO05D005500 2.4e-32 143.3 225 43.1
SalBow6G5744 Salvia bowleyana HOM05D004799 ORTHO05D005500 2.4e-32 143.3 225 43.1
HPP92_009361 Vanilla planifolia HOM05D004799 ORTHO05D005500 2.4e-32 143.3 220 46.8
MBI03_g11149_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 6.9e-32 141.7 313 38.0
Prupe.1G562800 Prunus persica HOM05D004799 ORTHO05D005500 3.4e-31 139.4 163 58.9
ECA240G2283 Erigeron canadensis HOM05D004799 ORTHO05D005500 7.1e-29 131.7 220 43.6
Glyma.14G170300 Glycine max HOM05D004799 ORTHO05D005500 4.6e-28 129.0 155 53.5
MSTRG.16532 Avicennia marina HOM05D004799 ORTHO05D005500 7.9e-28 128.3 161 51.6
Atru.chr6.1045 Acer truncatum HOM05D004799 ORTHO05D005500 3.0e-27 126.3 131 56.5
SEGI_10500 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 1.1e-26 124.4 95 68.4
Mapoly0065s0027 Marchantia polymorpha HOM05D004799 ORTHO05D005500 1.3e-22 110.9 209 42.1
CBR_g22015 Chara braunii HOM05D004799 ORTHO05D005500 2.2e-22 110.2 261 36.4
Lj9C308T7 Lonicera japonica HOM05D004799 ORTHO05D005500 1.9e-21 107.1 154 50.6
Zm00001eb398170 Zea mays HOM05D004799 ORTHO05D005500 7.9e-20 101.7 161 44.7
Ah.13g077920 Amaranthus hybridus HOM05D004799 ORTHO05D005500 4.8e-17 92.4 219 35.2
AagrBONN_evm.TU.Sc2ySwM_344.2060 Anthoceros agrestis HOM05D004799 ORTHO05D005500 1.5e-15 87.4 71 63.4
MBI03_g11127_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 2.7e-12 76.6 131 45.0
Pp3c4_27250 Physcomitrium patens HOM05D004799 ORTHO05D005500 3.6e-12 76.3 151 39.7
arahy.Tifrunner.gnm1.ann1.DUW5WJ Arachis hypogaea HOM05D004799 ORTHO05D005500 7.9e-12 75.1 77 61.0
A09p63310 Brassica napus HOM05D004799 ORTHO05D005500 9.7e-10 68.2 52 65.4
BraA09t41682Z Brassica rapa HOM05D004799 ORTHO05D005500 9.7e-10 68.2 52 65.4
GSVIVG01013911001 Vitis vinifera HOM05D004799 ORTHO05D005500 6.3e-09 65.5 85 45.9
Lj5A253T37 Lonicera japonica HOM05D012292 ORTHO05D012234 1.1e-08 64.7 233 30.9
SEGI_00858 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 1.8e-08 63.9 125 41.6
BcaB03g13258 Brassica carinata HOM05D004799 ORTHO05D005500 3.1e-08 63.2 91 46.2
SMO367G0479 Selaginella moellendorffii HOM05D004799 ORTHO05D005500 3.1e-08 63.2 39 76.9
CSS0012117 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 5.3e-08 62.4 44 70.5
CSS0018254 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 1.2e-07 61.2 44 70.5
Cre06.g279250 Chlamydomonas reinhardtii HOM05D004799 ORTHO05D005500 4.5e-07 59.3 206 31.6
Lj5A252G43 Lonicera japonica HOM05D012292 ORTHO05D012234 7.7e-07 58.5 93 40.9


User provided reference genes

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