Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 8.6e-145 516.9 253 100.0
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 3.1e-86 322.4 193 77.7
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 1.2e-85 320.5 199 77.4
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 1.5e-85 320.1 245 66.9
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 1.5e-85 320.1 195 78.5
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 5.0e-84 315.1 191 77.5
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 1.1e-83 313.9 208 73.6
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 3.2e-83 312.4 253 64.0
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 4.2e-83 312.0 218 70.6
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 4.2e-83 312.0 218 70.6
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 7.2e-83 311.2 243 64.6
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 7.2e-83 311.2 261 61.7
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 3.6e-82 308.9 191 76.4
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 1.0e-81 307.4 191 77.0
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 8.8e-81 304.3 193 75.6
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 9.7e-80 300.8 201 71.1
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 1.3e-79 300.4 224 66.5
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 1.3e-79 300.4 224 66.5
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.7e-79 300.1 191 74.3
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.7e-79 300.1 191 74.3
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 8.2e-79 297.7 226 65.9
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 1.4e-78 297.0 222 67.1
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 3.4e-77 292.4 203 68.5
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 5.9e-77 291.6 191 70.7
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 5.9e-77 291.6 217 64.5
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 1.3e-76 290.4 254 56.7
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 2.2e-76 289.7 207 69.1
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 2.9e-76 289.3 254 56.3
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 2.9e-76 289.3 223 65.0
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 3.8e-76 288.9 195 73.3
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 3.8e-76 288.9 191 73.3
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 5.0e-76 288.5 217 63.6
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 6.5e-76 288.1 191 73.3
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 8.5e-76 287.7 191 72.8
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 4.2e-75 285.4 214 65.4
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 4.2e-75 285.4 193 71.0
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 5.5e-75 285.0 192 68.2
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 9.4e-75 284.3 191 69.1
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 1.2e-74 283.9 191 69.1
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 1.2e-74 283.9 214 65.4
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 1.2e-74 283.9 191 69.6
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 3.6e-74 282.3 204 68.6
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 4.7e-74 282.0 214 64.5
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 4.7e-74 282.0 214 64.5
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 7.9e-74 281.2 224 64.3
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 1.8e-73 280.0 191 68.6
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 2.6e-72 276.2 190 70.5
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 7.4e-72 274.6 191 68.1
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 1.3e-71 273.9 193 67.4
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 2.4e-70 269.6 220 60.5
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 5.3e-70 268.5 193 64.8
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 1.2e-69 267.3 211 61.6
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 1.6e-69 266.9 165 77.0
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 2.6e-69 266.2 203 65.5
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 4.5e-69 265.4 191 68.6
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 4.5e-69 265.4 191 67.0
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 2.9e-68 262.7 173 69.4
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 3.8e-68 262.3 191 64.9
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 8.5e-68 261.2 187 65.8
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 1.1e-67 260.8 191 64.4
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 1.1e-67 260.8 191 63.9
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 1.1e-67 260.8 191 63.9
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 1.5e-67 260.4 191 64.4
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 1.5e-67 260.4 191 64.4
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 5.5e-67 258.5 191 64.4
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 7.2e-67 258.1 215 58.1
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 1.6e-66 256.9 224 57.1
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 1.6e-66 256.9 214 59.3
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 1.6e-66 256.9 254 53.1
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 2.1e-66 256.5 176 68.2
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 2.7e-66 256.1 232 56.5
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 1.7e-63 246.9 194 58.8
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 2.8e-63 246.1 194 59.3
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 2.4e-62 243.0 196 58.2
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 5.3e-62 241.9 245 55.9
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 2.0e-61 240.0 164 67.7
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 1.3e-60 237.3 165 65.5
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 2.9e-60 236.1 192 58.9
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 3.8e-60 235.7 203 55.7
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 1.9e-59 233.4 191 58.1
Nn4g23269 Nelumbo nucifera HOM05D004214 ORTHO05D004963 4.2e-59 232.3 190 63.2
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 7.2e-59 231.5 201 55.2
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 7.2e-59 231.5 194 62.9
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 9.4e-59 231.1 147 73.5
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 3.6e-58 229.2 157 66.9
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 6.1e-58 228.4 196 54.6
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 4.0e-57 225.7 188 57.4
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 5.2e-57 225.3 189 57.1
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 8.8e-57 224.6 188 56.9
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 1.5e-56 223.8 189 54.5
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 7.5e-56 221.5 195 60.0
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 5.4e-54 215.3 147 68.7
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 5.4e-54 215.3 147 68.7
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 1.2e-53 214.2 146 68.5
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 2.0e-53 213.4 196 56.6
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 5.0e-52 208.8 193 50.3
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 5.0e-52 208.8 209 48.3
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 1.9e-51 206.8 140 70.0
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 2.1e-50 203.4 195 48.7
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 6.1e-50 201.8 201 51.2
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 1.8e-49 200.3 191 53.9
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 4.0e-49 199.1 140 66.4
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 4.0e-49 199.1 200 46.5
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 2.0e-48 196.8 208 45.2
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 2.6e-48 196.4 208 46.2
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 2.6e-48 196.4 198 45.5
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 4.4e-48 195.7 197 47.2
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 1.7e-47 193.7 208 45.7
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 2.2e-47 193.4 220 44.1
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 2.2e-47 193.4 220 42.3
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 2.8e-47 193.0 213 44.6
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 8.3e-47 191.4 215 44.2
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 1.8e-46 190.3 190 47.9
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 7.0e-46 188.3 194 48.5
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 1.2e-45 187.6 189 47.1
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 1.7e-44 183.7 193 47.2
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 1.7e-44 183.7 193 47.2
Glyma.19G025600 Glycine max HOM05D004214 ORTHO05D004963 1.1e-43 181.0 207 44.0
Mapoly0033s0115 Marchantia polymorpha HOM05D004214 ORTHO05D004963 5.6e-43 178.7 199 42.7
PGR083G1063 Punica granatum HOM05D004214 ORTHO05D004963 5.6e-43 178.7 190 47.9
ClCG09G017980 Citrullus lanatus HOM05D004214 ORTHO05D004963 1.6e-42 177.2 186 46.8
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 4.7e-42 175.6 217 42.9
Lj2g0019349 Lotus japonicus HOM05D004214 ORTHO05D004963 1.8e-41 173.7 191 43.5
CsaV3_5G038250 Cucumis sativus L. HOM05D004214 ORTHO05D004963 3.0e-41 172.9 188 46.3
Zm00001eb328430 Zea mays HOM05D004214 ORTHO05D004963 6.8e-41 171.8 190 47.4
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 8.9e-41 171.4 168 49.4
Lj2g0001860 Lotus japonicus HOM05D004214 ORTHO05D004963 1.2e-40 171.0 154 50.6
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 2.6e-40 169.9 196 43.9
Os07g0633000 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 4.4e-40 169.1 204 47.5
Phvul.004G029700 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 2.2e-39 166.8 205 40.0
FvH4_6g48001 Fragaria vesca HOM05D004214 ORTHO05D004963 1.8e-38 163.7 195 41.5
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.8e-38 163.7 234 39.7
Psat1g071840 Pisum sativum HOM05D004214 ORTHO05D004963 4.1e-38 162.5 198 40.9
FvH4_6g48000 Fragaria vesca HOM05D004214 ORTHO05D004963 1.2e-37 161.0 217 40.6
TPR.G8805 Trifolium pratense HOM05D004214 ORTHO05D004963 1.2e-37 161.0 257 38.1
MELO3C033594.2 Cucumis melo HOM05D004214 ORTHO05D004963 1.6e-37 160.6 185 43.8
FAN14G3700 Fragaria x ananassa HOM05D004214 ORTHO05D004963 2.7e-37 159.8 195 41.0
Gohir.A07G206700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 2.7e-37 159.8 98 72.4
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 1.0e-36 157.9 191 45.0
Ca_04848_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 1.0e-36 157.9 190 41.6
Nitab4.5_0001591g0160 Nicotiana tabacum HOM05D004214 ORTHO05D004963 4.3e-35 152.5 192 43.8
RcHm_v2.0_Chr2g0167241 Rosa chinensis HOM05D004214 ORTHO05D004963 5.6e-35 152.1 188 43.1
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.4e-33 147.5 217 38.2
FAN02G2928 Fragaria x ananassa HOM05D004214 ORTHO05D004963 2.4e-30 136.7 232 36.6
arahy.Tifrunner.gnm1.ann1.SU00NT Arachis hypogaea HOM05D004214 ORTHO05D004963 9.2e-30 134.8 193 38.9
CBR_g51334 Chara braunii HOM05D004214 ORTHO05D004963 2.0e-29 133.7 172 41.3
ClCG10G015310 Citrullus lanatus HOM05D004214 ORTHO05D004963 5.6e-27 125.6 192 37.0
BolC4t26178H Brassica oleracea HOM05D004214 ORTHO05D004963 1.5e-24 117.5 80 66.2
Gohir.D11G074550 Gossypium hirsutum HOM05D004214 ORTHO05D004963 2.6e-24 116.7 95 56.8
Gorai.007G080000 Gossypium raimondii HOM05D004214 ORTHO05D004963 3.4e-24 116.3 95 56.8
MD09G1055400 Malus domestica HOM05D004214 ORTHO05D004963 4.4e-24 115.9 116 46.6
Glyma.13G061800 Glycine max HOM05D004214 ORTHO05D004963 1.6e-21 107.5 97 49.5
PRCOL_00004285 Prasinoderma coloniale HOM05D004214 ORTHO05D004963 3.0e-20 103.2 180 31.1
C06p18570 Brassica napus HOM05D004214 ORTHO05D004963 7.3e-19 98.6 83 60.2
Lj3A350G16 Lonicera japonica HOM05D004214 ORTHO05D004963 2.4e-17 93.6 193 35.2
BraA07t29702Z Brassica rapa HOM05D004214 ORTHO05D004963 5.8e-16 89.0 74 62.2
Lj3A364T22 Lonicera japonica HOM05D004214 ORTHO05D004963 1.7e-15 87.4 75 54.7
Sabra17G0077200 Salix brachista HOM05D004214 ORTHO05D004963 2.4e-14 83.6 107 47.7
CsaV3_3G041190 Cucumis sativus L. HOM05D004214 ORTHO05D004963 5.4e-14 82.4 180 28.9
MELO3C009848.2 Cucumis melo HOM05D004214 ORTHO05D004963 3.9e-12 76.3 156 30.8
CBR_g46605 Chara braunii HOM05D004214 ORTHO05D004963 5.6e-11 72.4 121 34.7
Aa31LG9G16510 Aethionema arabicum HOM05D004214 ORTHO05D004963 7.3e-11 72.0 47 70.2
BolC6t37070H Brassica oleracea HOM05D004214 ORTHO05D004963 1.2e-10 71.2 66 54.5
BolC9t55376H Brassica oleracea HOM05D004214 ORTHO05D004963 4.7e-10 69.3 65 50.8
AagrBONN_evm.TU.Sc2ySwM_362.234 Anthoceros agrestis HOM05D019249 ORTHO05D019657 1.2e-08 64.7 262 25.6
Zm00001eb005260 Zea mays HOM05D004214 ORTHO05D004963 1.4e-06 57.8 55 50.9
Os10g0580600 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 2.4e-06 57.0 46 56.5
Pp3c17_17050 Physcomitrium patens HOM05D019249 ORTHO05D019657 5.4e-06 55.8 201 25.4


User provided reference genes

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