Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I01991 Eucalyptus grandis HOM05D006539 ORTHO05D008694 2.3e-204 715.3 359 100.0
PGR004G2004 Punica granatum HOM05D006539 ORTHO05D008694 6.9e-140 501.1 367 73.6
Manes.02G050600 Manihot esculenta HOM05D006539 ORTHO05D008694 3.9e-135 485.3 372 69.6
Prupe.3G259900 Prunus persica HOM05D006539 ORTHO05D008694 6.3e-133 478.0 364 70.3
GSVIVG01011483001 Vitis vinifera HOM05D006539 ORTHO05D008694 1.1e-132 477.2 376 67.8
RcHm_v2.0_Chr2g0166661 Rosa chinensis HOM05D006539 ORTHO05D008694 1.4e-132 476.9 363 69.7
TAR371G0397 Trochodendron aralioides HOM05D006539 ORTHO05D008694 1.4e-132 476.9 383 65.8
TAR371G0750 Trochodendron aralioides HOM05D006539 ORTHO05D008694 1.4e-132 476.9 383 65.8
TWI32G0765 Tripterygium wilfordii HOM05D006539 ORTHO05D008694 3.8e-130 468.8 363 70.0
Nn4g23332 Nelumbo nucifera HOM05D006539 ORTHO05D008694 6.5e-130 468.0 373 67.6
Peaxi162Scf00166g00943 Petunia axillaris HOM05D006539 ORTHO05D008694 1.9e-129 466.5 359 67.7
MD17G1055800 Malus domestica HOM05D006539 ORTHO05D008694 3.2e-129 465.7 367 69.5
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 9.4e-129 464.2 367 68.9
FAN05G4473 Fragaria x ananassa HOM05D006539 ORTHO05D008694 9.4e-129 464.2 362 68.2
Atru.chr8.368 Acer truncatum HOM05D006539 ORTHO05D008694 1.0e-127 460.7 368 67.1
CAN.G206.194 Capsicum annuum HOM05D006539 ORTHO05D008694 1.1e-126 457.2 367 66.8
CiPaw.03G091900 Carya illinoinensis HOM05D006539 ORTHO05D008694 1.1e-126 457.2 378 67.5
Sopen02g033260 Solanum pennellii HOM05D006539 ORTHO05D008694 4.4e-126 455.3 369 66.1
Solyc02g088540.3 Solanum lycopersicum HOM05D006539 ORTHO05D008694 9.7e-126 454.1 369 66.4
ClCG10G015450 Citrullus lanatus HOM05D003516 ORTHO05D004068 2.8e-125 452.6 311 72.7
CsaV3_3G041040 Cucumis sativus L. HOM05D006539 ORTHO05D008694 1.1e-124 450.7 357 67.8
CANSAT64G0188 Cannabis sativa HOM05D006539 ORTHO05D008694 2.4e-124 449.5 379 65.4
Lju41A8T108 Lonicera japonica HOM05D006539 ORTHO05D008694 9.1e-124 447.6 357 68.1
Gorai.007G080900 Gossypium raimondii HOM05D006539 ORTHO05D008694 2.0e-123 446.4 357 66.1
FvH4_6g47560 Fragaria vesca HOM05D006539 ORTHO05D008694 2.6e-123 446.0 259 83.4
Aqoxy3G00450 Aquilegia oxysepala HOM05D006539 ORTHO05D008694 1.0e-122 444.1 382 62.0
Sed0012723 Sechium edule HOM05D003516 ORTHO05D004068 1.0e-122 444.1 317 71.3
Rhsim10G0046900 Rhododendron simsii HOM05D006539 ORTHO05D008694 1.7e-122 443.4 383 62.7
Thecc.04G090200 Theobroma cacao HOM05D006539 ORTHO05D008694 2.9e-122 442.6 359 66.0
Gohir.A11G071300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 5.0e-122 441.8 352 66.2
Potri.004G122300 Populus trichocarpa HOM05D006539 ORTHO05D008694 1.9e-121 439.9 282 77.0
QL02p039353 Quercus lobata HOM05D006539 ORTHO05D008694 3.2e-121 439.1 361 67.0
PGSC0003DMG400001350 Solanum tuberosum HOM05D006539 ORTHO05D008694 4.2e-121 438.7 286 76.6
QL02p039600 Quercus lobata HOM05D006539 ORTHO05D008694 5.5e-121 438.3 361 67.0
vmacro05668 Vaccinium macrocarpon HOM05D006539 ORTHO05D008694 1.2e-120 437.2 385 62.3
Sabra04G0067100 Salix brachista HOM05D006539 ORTHO05D008694 1.6e-120 436.8 295 74.2
TPR.G33480 Trifolium pratense HOM05D006539 ORTHO05D008694 2.7e-120 436.0 323 68.4
Duzib264G0172 Durio zibethinus HOM05D006539 ORTHO05D008694 1.4e-119 433.7 351 65.2
DCAR_011065 Daucus carota HOM05D006539 ORTHO05D008694 8.8e-119 431.0 372 64.8
CARHR197920 Cardamine hirsuta HOM05D006539 ORTHO05D008694 4.8e-117 425.2 362 63.8
Gohir.D11G075300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 4.8e-117 425.2 255 79.6
Cc07_g03820 Coffea canephora HOM05D006539 ORTHO05D008694 8.3e-117 424.5 389 62.0
THA.LOC104822345 Tarenaya hassleriana HOM05D006539 ORTHO05D008694 8.3e-117 424.5 378 62.4
Migut.H00658 Erythranthe guttata HOM05D006539 ORTHO05D008694 1.1e-116 424.1 364 62.1
arahy.Tifrunner.gnm1.ann1.YFBV2Q Arachis hypogaea HOM05D006539 ORTHO05D008694 1.8e-116 423.3 276 73.6
SGA_v2.0_scaffold4G02416 Striga asiatica HOM05D006539 ORTHO05D008694 1.8e-116 423.3 357 61.1
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 4.1e-116 422.2 355 63.7
EL10Ac2g03043 Beta vulgaris HOM05D006539 ORTHO05D008694 5.3e-116 421.8 303 70.6
Sp6g28700 Schrenkiella parvula HOM05D006539 ORTHO05D008694 5.3e-116 421.8 351 63.5
AUR62018139 Chenopodium quinoa HOM05D006539 ORTHO05D008694 9.1e-116 421.0 264 76.9
Hund15564 Selenicereus undatus HOM05D006539 ORTHO05D008694 3.5e-115 419.1 252 79.4
AT5G15390 Arabidopsis thaliana HOM05D006539 ORTHO05D008694 7.7e-115 417.9 355 63.7
Oeu000853.1 Olea europaea HOM05D006539 ORTHO05D008694 1.0e-114 417.5 365 61.1
Ca_06802_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 1.3e-114 417.2 277 72.9
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 1.7e-114 416.8 316 67.7
Aa31LG11G14170 Aethionema arabicum HOM05D006539 ORTHO05D008694 2.9e-114 416.0 366 61.5
MSTRG.23905 Avicennia marina HOM05D006539 ORTHO05D008694 5.0e-114 415.2 358 62.6
Nitab4.5_0008573g0030 Nicotiana tabacum HOM05D006539 ORTHO05D008694 5.0e-114 415.2 375 61.3
SalBow1G8487 Salvia bowleyana HOM05D006539 ORTHO05D008694 6.5e-114 414.8 365 61.4
Glyma.08G241400 Glycine max HOM05D006539 ORTHO05D008694 8.5e-114 414.5 274 74.1
AL6G26250 Arabidopsis lyrata HOM05D006539 ORTHO05D008694 4.2e-113 412.1 360 63.1
Thhalv10013964m.g Eutrema salsugineum HOM05D006539 ORTHO05D008694 5.5e-113 411.8 354 62.7
Sc11g0004810 Simmondsia chinensis HOM05D006539 ORTHO05D008694 7.2e-113 411.4 369 63.4
Medtr7g012240 Medicago truncatula HOM05D006539 ORTHO05D008694 1.2e-112 410.6 268 75.0
ATR0111G028 Amborella trichopoda HOM05D006539 ORTHO05D008694 2.7e-112 409.5 322 65.8
HanXRQChr09g0264131 Helianthus annuus HOM05D006539 ORTHO05D008694 3.6e-112 409.1 358 63.1
Haze_14476 Corylus avellana HOM05D003516 ORTHO05D004068 8.0e-112 407.9 330 67.3
Carub.0006s1356 Capsella rubella HOM05D006539 ORTHO05D008694 1.4e-111 407.1 359 62.1
Phvul.008G040300 Phaseolus vulgaris HOM05D006539 ORTHO05D008694 2.3e-111 406.4 282 72.3
Lalb_Chr10g0093241 Lupinus albus HOM05D006539 ORTHO05D008694 3.0e-111 406.0 365 61.9
CDE06G2615 Ceratophyllum demersum HOM05D006539 ORTHO05D008694 5.2e-111 405.2 351 62.4
PSO478G0472 Papaver somniferum HOM05D006539 ORTHO05D008694 2.0e-110 403.3 369 61.5
VMungo1383G3577 Vigna mungo HOM05D006539 ORTHO05D008694 2.0e-110 403.3 282 72.0
arahy.Tifrunner.gnm1.ann1.54MYG6 Arachis hypogaea HOM05D006539 ORTHO05D008694 9.8e-110 401.0 306 66.7
Psat3g198480 Pisum sativum HOM05D006539 ORTHO05D008694 8.3e-109 397.9 385 57.4
Zm00001eb326670 Zea mays HOM05D006539 ORTHO05D008694 3.1e-108 396.0 360 61.1
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 4.1e-108 395.6 363 59.8
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 7.0e-108 394.8 362 59.4
Lj1g0006679 Lotus japonicus HOM05D006539 ORTHO05D008694 9.1e-108 394.4 367 59.9
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 2.0e-107 393.3 363 59.2
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 2.7e-107 392.9 360 59.4
AUR62034477 Chenopodium quinoa HOM05D006539 ORTHO05D008694 3.5e-107 392.5 409 54.0
Os07g0598100 Oryza sativa ssp. japonica HOM05D006539 ORTHO05D008694 1.7e-106 390.2 293 68.6
FAN14G0848 Fragaria x ananassa HOM05D006539 ORTHO05D008694 4.2e-105 385.6 359 61.8
BraA10t44417Z Brassica rapa HOM05D006539 ORTHO05D008694 5.5e-105 385.2 369 58.0
HPP92_013411 Vanilla planifolia HOM05D006539 ORTHO05D008694 9.8e-102 374.4 274 68.2
MELO3C009837.2 Cucumis melo HOM05D006539 ORTHO05D008694 4.1e-100 369.0 358 60.1
unitig_899.g15160 Utricularia gibba HOM05D006539 ORTHO05D008694 1.5e-97 360.5 305 62.0
HPP92_006554 Vanilla planifolia HOM05D006539 ORTHO05D008694 2.8e-88 329.7 237 68.8
SEGI_40704 Sequoiadendron giganteum HOM05D006539 ORTHO05D008694 1.8e-87 327.0 240 64.6
FAN09G1445 Fragaria x ananassa HOM05D006539 ORTHO05D008694 5.4e-84 315.5 364 52.2
Ciclev10013894m.g Citrus clementina HOM05D006539 ORTHO05D008694 3.0e-82 309.7 275 60.4
AagrBONN_evm.TU.Sc2ySwM_117.170 Anthoceros agrestis HOM05D006539 ORTHO05D008694 6.8e-79 298.5 305 54.1
Dinv33805 Davidia involucrata HOM05D006539 ORTHO05D008694 2.6e-78 296.6 273 61.2
Nitab4.5_0003216g0020 Nicotiana tabacum HOM05D006539 ORTHO05D008694 2.2e-77 293.5 375 49.3
Pp3c12_19160 Physcomitrium patens HOM05D006539 ORTHO05D008694 9.2e-76 288.1 229 59.0
Mapoly0088s0068 Marchantia polymorpha HOM05D006539 ORTHO05D008694 5.1e-74 282.3 237 58.6
SMO228G0204 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 2.4e-71 273.5 241 52.7
CSS0042966 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 5.8e-70 268.9 280 55.7
CSS0047989 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 9.9e-70 268.1 280 55.7
arahy.Tifrunner.gnm1.ann1.B86ER2 Arachis hypogaea HOM05D006539 ORTHO05D009236 4.3e-65 252.7 198 63.6
CBR_g38172 Chara braunii HOM05D006539 ORTHO05D008694 5.6e-65 252.3 239 51.0
SMO116G0014 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 5.3e-63 245.7 238 50.0
HPP92_013415 Vanilla planifolia HOM05D006539 ORTHO05D008694 9.6e-57 224.9 183 63.4
Ca_06844_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 9.9e-54 214.9 171 62.6
AUR62044515 Chenopodium quinoa HOM05D006539 ORTHO05D008694 4.6e-51 206.1 114 82.5
Pp3c3_25470 Physcomitrium patens HOM05D006539 ORTHO05D008694 1.2e-46 191.4 152 55.9
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 4.5e-46 189.5 233 38.2
PRCOL_00002708 Prasinoderma coloniale HOM05D006539 ORTHO05D008694 5.8e-46 189.1 205 44.9
FAN02G0136 Fragaria x ananassa HOM05D006539 ORTHO05D008694 1.9e-44 184.1 120 77.5
MCO16G092 Micromonas commoda HOM05D006539 ORTHO05D008694 1.3e-40 171.4 219 40.6
MD11G1144500 Malus domestica HOM05D006539 ORTHO05D008694 1.4e-36 157.9 225 47.1
MD07G1179900 Malus domestica HOM05D006539 ORTHO05D008694 4.2e-36 156.4 206 51.5
CSS0026858 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 1.5e-30 137.9 137 58.4
CSS0050509 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 2.2e-29 134.0 147 54.4
HPP92_013416 Vanilla planifolia HOM05D006539 ORTHO05D008694 4.2e-28 129.8 99 66.7
Ciclev10013255m.g Citrus clementina HOM05D006539 ORTHO05D008694 2.1e-27 127.5 75 82.7
QL02p073354 Quercus lobata HOM05D006539 ORTHO05D008694 1.5e-25 121.3 126 59.5
QL02p073352 Quercus lobata HOM05D006539 ORTHO05D008694 1.1e-17 95.1 66 72.7
Cre09.g392950 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D044332 3.3e-17 93.6 214 31.8
MD07G1180000 Malus domestica HOM05D006539 ORTHO05D248072 7.2e-12 75.9 105 42.9
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 5.7e-09 66.2 143 30.1
Cre05.g238950 Chlamydomonas reinhardtii HOM05D006695 ORTHO05D008239 2.8e-08 63.9 133 30.1
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 1.4e-07 61.6 147 32.0
A07p00840 Brassica napus HOM05D005801 ORTHO05D008555 1.8e-07 61.2 201 24.4
Eucgr.H02435 Eucalyptus grandis HOM05D007191 ORTHO05D009370 1.8e-07 61.2 148 29.7
BcaC06g36648 Brassica carinata HOM05D005801 ORTHO05D008555 3.1e-07 60.5 201 23.9
BolC7t40588H Brassica oleracea HOM05D005801 ORTHO05D008555 3.1e-07 60.5 201 23.9
BraA07t27882Z Brassica rapa HOM05D005801 ORTHO05D008555 3.1e-07 60.5 201 23.9
MCO05G154 Micromonas commoda HOM05D006539 ORTHO05D044332 3.1e-07 60.5 218 24.8
SMO367G0373 Selaginella moellendorffii HOM05D005801 ORTHO05D008555 4.1e-07 60.1 171 29.2
CARHR110310 Cardamine hirsuta HOM05D005801 ORTHO05D008555 5.3e-07 59.7 203 25.1
C07p01810 Brassica napus HOM05D005801 ORTHO05D008555 7.0e-07 59.3 201 24.4
BcaB03g16775 Brassica carinata HOM05D005801 ORTHO05D008555 9.1e-07 58.9 201 22.9
Pp3c22_4480 Physcomitrium patens HOM05D006695 ORTHO05D008239 9.1e-07 58.9 141 27.7
CBR_g20364 Chara braunii HOM05D005801 ORTHO05D008555 1.2e-06 58.5 166 27.7
Carub.0003s3414 Capsella rubella HOM05D005801 ORTHO05D008555 2.6e-06 57.4 200 25.0
MSTRG.24766 Avicennia marina HOM05D006695 ORTHO05D008239 3.5e-06 57.0 161 28.6
CiPaw.07G045700 Carya illinoinensis HOM05D007191 ORTHO05D009370 4.5e-06 56.6 151 30.5
Cre01.g027350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 5.9e-06 56.2 156 25.6
Duzib268G0722 Durio zibethinus HOM05D006539 ORTHO05D186223 5.9e-06 56.2 39 69.2
SGA_v2.0_scaffold89G27581 Striga asiatica HOM05D006695 ORTHO05D008239 5.9e-06 56.2 146 28.1
RcHm_v2.0_Chr2g0110691 Rosa chinensis HOM05D007191 ORTHO05D003232 7.7e-06 55.8 154 30.5


User provided reference genes

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