Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I01863 Eucalyptus grandis HOM05D007194 ORTHO05D009182 3.8e-111 404.8 204 100.0
CANSAT16G0047 Cannabis sativa HOM05D007194 ORTHO05D009182 2.3e-92 342.4 251 74.5
RcHm_v2.0_MTg0498961 Rosa chinensis HOM05D007194 ORTHO05D009182 5.2e-92 341.3 251 74.1
Cfa021340 Carpinus fangiana HOM05D007194 ORTHO05D009182 1.2e-91 340.1 251 74.5
A04p09540 Brassica napus HOM05D007194 ORTHO05D009182 1.3e-90 336.7 251 74.1
BolSC28t60320H Brassica oleracea HOM05D007194 ORTHO05D009182 1.3e-90 336.7 251 74.1
BraSC48t46300Z Brassica rapa HOM05D007194 ORTHO05D009182 1.3e-90 336.7 251 74.1
AT2G07771 Arabidopsis thaliana HOM05D007194 ORTHO05D009182 4.9e-90 334.7 243 75.3
ATMG00900 Arabidopsis thaliana HOM05D007194 ORTHO05D009182 4.9e-90 334.7 243 75.3
Gorai.001G165900 Gossypium raimondii HOM05D007194 ORTHO05D009182 8.3e-90 334.0 251 73.3
Sp3g25540 Schrenkiella parvula HOM05D007194 ORTHO05D009182 1.1e-89 333.6 251 73.7
CAN.G1690.2 Capsicum annuum HOM05D007194 ORTHO05D009182 2.4e-89 332.4 251 73.3
CARHR283160 Cardamine hirsuta HOM05D007194 ORTHO05D009182 3.2e-89 332.0 243 74.5
DCAR_032453 Daucus carota HOM05D007194 ORTHO05D009182 2.1e-88 329.3 251 73.3
Aa31csc239G110 Aethionema arabicum HOM05D007194 ORTHO05D009182 8.6e-87 323.9 243 73.7
AL3G44600 Arabidopsis lyrata HOM05D007194 ORTHO05D009182 2.5e-86 322.4 232 75.0
CAN.G85.20 Capsicum annuum HOM05D007194 ORTHO05D009182 1.1e-84 317.0 251 70.9
HanXRQChr16g0504451 Helianthus annuus HOM05D007194 ORTHO05D009182 1.1e-84 317.0 243 72.4
HanXRQMTg0579111 Helianthus annuus HOM05D007194 ORTHO05D009182 1.1e-84 317.0 243 72.4
arahy.Tifrunner.gnm1.ann1.14Z8E4 Arachis hypogaea HOM05D007194 ORTHO05D009182 1.8e-84 316.2 240 73.3
arahy.Tifrunner.gnm1.ann1.F9VS0T Arachis hypogaea HOM05D007194 ORTHO05D009182 1.8e-84 316.2 240 73.3
arahy.Tifrunner.gnm1.ann1.SBV1ZL Arachis hypogaea HOM05D007194 ORTHO05D009182 1.8e-84 316.2 240 73.3
LjContig00315g0023372 Lotus japonicus HOM05D007194 ORTHO05D009182 1.8e-84 316.2 240 73.3
Lalb_Chr00c24g0406951 Lupinus albus HOM05D007194 ORTHO05D009182 8.9e-84 313.9 245 71.0
Lalb_Chr17g0337381 Lupinus albus HOM05D007194 ORTHO05D009182 4.4e-83 311.6 245 70.2
Sed0021793 Sechium edule HOM05D007194 ORTHO05D009182 1.3e-82 310.1 232 73.7
Lsat_1_v5_gn_7_100841 Lactuca sativa HOM05D007194 ORTHO05D009182 1.7e-82 309.7 239 71.5
Lsat_1_v5_gn_7_99901 Lactuca sativa HOM05D007194 ORTHO05D009182 1.7e-82 309.7 239 71.5
Solyc00g500242.1 Solanum lycopersicum HOM05D007194 ORTHO05D009182 1.6e-80 303.1 243 70.4
Solyc00g500277.1 Solanum lycopersicum HOM05D007194 ORTHO05D009182 1.6e-80 303.1 243 70.4
Aqoxy3G01137 Aquilegia oxysepala HOM05D007194 ORTHO05D009182 2.1e-80 302.8 240 71.2
SGA_v2.0_scaffold400G50840 Striga asiatica HOM05D007194 ORTHO05D009182 2.1e-80 302.8 239 71.1
EL10Ac7g17455 Beta vulgaris HOM05D007194 ORTHO05D009182 1.9e-78 296.2 235 69.8
Psat0s922g0240 Pisum sativum HOM05D007194 ORTHO05D009182 7.3e-78 294.3 228 71.9
SHI36846 Sapria himalayana HOM05D007194 ORTHO05D009182 1.2e-77 293.5 242 68.6
RhsimMtG0003100 Rhododendron simsii HOM05D007194 ORTHO05D009182 2.4e-76 289.3 222 70.7
RhsimMtG0007900 Rhododendron simsii HOM05D007194 ORTHO05D009182 2.4e-76 289.3 222 70.7
Nitab4.5_0000031g0190 Nicotiana tabacum HOM05D007194 ORTHO05D009182 3.1e-76 288.9 233 68.7
Lj2P1233T109 Lonicera japonica HOM05D007194 ORTHO05D009182 4.0e-76 288.5 219 72.1
arahy.Tifrunner.gnm1.ann1.GM5VKV Arachis hypogaea HOM05D007194 ORTHO05D009182 4.4e-75 285.0 216 73.1
Dinv06723 Davidia involucrata HOM05D007194 ORTHO05D009182 4.4e-75 285.0 220 71.4
Lj2P1235T102 Lonicera japonica HOM05D007194 ORTHO05D009182 4.9e-74 281.6 156 91.0
Nn1g09980 Nelumbo nucifera HOM05D007194 ORTHO05D009182 3.5e-72 275.4 213 71.4
ECA039G0021 Erigeron canadensis HOM05D007194 ORTHO05D009182 1.0e-71 273.9 156 87.8
SHI36965 Sapria himalayana HOM05D007194 ORTHO05D009182 3.0e-71 272.3 221 67.4
BolSC28t60390H Brassica oleracea HOM05D007194 ORTHO05D009182 6.6e-71 271.2 208 71.6
TWI15G0311 Tripterygium wilfordii HOM05D007194 ORTHO05D009182 1.1e-70 270.4 152 89.5
TPR.G39619 Trifolium pratense HOM05D007194 ORTHO05D009182 7.3e-70 267.7 151 89.4
AT2G07681 Arabidopsis thaliana HOM05D007194 ORTHO05D009182 9.6e-70 267.3 228 67.1
Lsat_1_v5_gn_1_67041 Lactuca sativa HOM05D007194 ORTHO05D009182 1.5e-67 260.0 151 86.1
BraSC48t46335Z Brassica rapa HOM05D007194 ORTHO05D009182 2.2e-66 256.1 197 71.1
Sed0000988 Sechium edule HOM05D007194 ORTHO05D009182 4.9e-66 255.0 138 92.0
arahy.Tifrunner.gnm1.ann1.UX1VFS Arachis hypogaea HOM05D007194 ORTHO05D009182 7.1e-65 251.1 165 81.2
Ca_07440_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 1.5e-62 243.4 133 91.7
Lj5P380T4 Lonicera japonica HOM05D007194 ORTHO05D009182 1.9e-62 243.0 230 62.2
Ah.10g028440 Amaranthus hybridus HOM05D007194 ORTHO05D009182 2.5e-62 242.7 141 87.9
Lsat_1_v5_gn_6_37840 Lactuca sativa HOM05D007194 ORTHO05D009182 3.3e-62 242.3 206 65.0
BolSC28t60422H Brassica oleracea HOM05D007194 ORTHO05D009182 1.1e-60 237.3 197 68.5
Prupe.1G175300 Prunus persica HOM05D007194 ORTHO05D009182 2.4e-60 236.1 220 62.7
Lsat_1_v5_gn_4_20401 Lactuca sativa HOM05D007194 ORTHO05D009182 1.2e-59 233.8 201 63.7
Nitab4.5_0001152g0940 Nicotiana tabacum HOM05D007194 ORTHO05D009182 8.4e-58 227.6 215 60.9
EL10Ac8g19071 Beta vulgaris HOM05D007194 ORTHO05D009182 1.1e-57 227.3 139 83.5
Nitab4.5_0002418g0160 Nicotiana tabacum HOM05D007194 ORTHO05D009182 6.0e-56 221.5 209 61.2
Nitab4.5_0001646g0030 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.0e-55 220.7 130 86.9
Sopen00g002730 Solanum pennellii HOM05D007194 ORTHO05D009182 3.7e-53 212.2 178 64.0
SalBow1G0339 Salvia bowleyana HOM05D007194 ORTHO05D009182 4.8e-53 211.8 173 67.6
QL93p0053_0961 Quercus lobata HOM05D007194 ORTHO05D009182 1.1e-52 210.7 111 91.9
Lsat_1_v5_gn_5_17681 Lactuca sativa HOM05D007194 ORTHO05D009182 7.6e-51 204.5 189 63.5
Nitab4.5_0006806g0100 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.0e-50 204.1 204 61.3
Nitab4.5_0012158g0050 Nicotiana tabacum HOM05D007194 ORTHO05D009182 3.5e-48 195.7 210 58.1
CAN.G1542.2 Capsicum annuum HOM05D007194 ORTHO05D009182 1.4e-44 183.7 118 79.7
arahy.Tifrunner.gnm1.ann1.6A3TYM Arachis hypogaea HOM05D007194 ORTHO05D009182 2.4e-44 183.0 107 87.9
ATR0693G113 Amborella trichopoda HOM05D007194 ORTHO05D009182 6.9e-44 181.4 98 89.8
Lj1P486T6 Lonicera japonica HOM05D007194 ORTHO05D009182 5.9e-43 178.3 113 81.4
Nitab4.5_0003083g0040 Nicotiana tabacum HOM05D007194 ORTHO05D008899 7.6e-43 177.9 109 84.4
Ca_14744_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 3.9e-39 165.6 88 90.9
SHI26663 Sapria himalayana HOM05D007194 ORTHO05D009182 4.3e-38 162.2 101 84.2
CAN.G1134.4 Capsicum annuum HOM05D007194 ORTHO05D009182 3.2e-33 146.0 110 71.8
Gohir.A08G085962 Gossypium hirsutum HOM05D007194 ORTHO05D009182 3.2e-33 146.0 117 72.6
CAN.G1001.43 Capsicum annuum HOM05D000927 ORTHO05D000850 3.6e-32 142.5 116 67.2
Glyma.19G075000 Glycine max HOM05D007194 ORTHO05D009182 3.6e-32 142.5 73 93.2
CAN.G122.10 Capsicum annuum HOM05D007194 ORTHO05D009182 2.3e-31 139.8 75 89.3
Gohir.A02G088502 Gossypium hirsutum HOM05D007194 ORTHO05D009182 1.1e-28 131.0 69 88.4
Sopen01g007230 Solanum pennellii HOM05D007194 ORTHO05D009182 1.8e-28 130.2 72 84.7
CAN.G78.2 Capsicum annuum HOM05D007194 ORTHO05D009182 5.3e-28 128.6 68 89.7
CAN.G889.9 Capsicum annuum HOM05D007194 ORTHO05D009182 1.5e-27 127.1 75 85.3
HanXRQChr05g0135281 Helianthus annuus HOM05D007194 ORTHO05D009182 1.5e-27 127.1 129 58.9
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 7.7e-27 124.8 79 77.2
Manes.06G014501 Manihot esculenta HOM05D007194 ORTHO05D009182 1.2e-24 117.5 65 87.7
TAR625G1253 Trochodendron aralioides HOM05D007194 ORTHO05D009182 3.6e-24 115.9 124 56.5
Peaxi162Scf00174g01622 Petunia axillaris HOM05D000219 ORTHO05D000226 4.7e-24 115.5 60 91.7
Solyc12g035840.1 Solanum lycopersicum HOM05D007194 ORTHO05D009182 9.7e-22 107.8 69 78.3
Haze_27474 Corylus avellana HOM05D007194 ORTHO05D009182 5.3e-20 102.1 92 53.3
BraSC48t46286Z Brassica rapa HOM05D007194 ORTHO05D009182 4.4e-14 82.4 47 91.5
CAN.G380.6 Capsicum annuum HOM05D007194 ORTHO05D009182 1.3e-13 80.9 55 74.5
Nitab4.5_0000859g0080 Nicotiana tabacum HOM05D000540 ORTHO05D008899 8.2e-13 78.2 54 75.9
SHI21961 Sapria himalayana HOM05D007194 ORTHO05D009182 6.5e-10 68.6 47 80.9
unitig_87.g27964 Utricularia gibba HOM05D007194 ORTHO05D009182 8.5e-10 68.2 105 44.8
BraSC54t46378Z Brassica rapa HOM05D007194 ORTHO05D009182 1.5e-09 67.4 36 94.4
SHI24634 Sapria himalayana HOM05D007194 ORTHO05D009182 3.2e-09 66.2 110 42.7
Aqoxy4G01620 Aquilegia oxysepala HOM05D007194 ORTHO05D009182 5.5e-09 65.5 43 81.4
ClCG10G007880 Citrullus lanatus HOM05D007194 ORTHO05D009182 1.6e-08 63.9 96 46.9
Phvul.007G104600 Phaseolus vulgaris HOM05D007194 ORTHO05D009182 3.0e-07 59.7 46 69.6
PGSC0003DMG400042571 Solanum tuberosum HOM05D007194 ORTHO05D009182 5.2e-07 58.9 44 70.5
Nitab4.5_0000859g0090 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.5e-06 57.4 47 74.5


User provided reference genes

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