Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 0.0e+00 1672.5 948 100.0
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 2.5e-245 852.8 960 55.6
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 2.6e-242 842.8 949 54.8
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 5.9e-239 831.6 955 53.7
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 3.0e-235 819.3 952 51.7
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 2.6e-234 816.2 955 51.4
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 3.1e-232 809.3 961 54.0
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 8.0e-228 794.7 1025 49.9
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 5.2e-227 792.0 956 53.0
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 6.8e-227 791.6 956 51.9
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.5e-226 790.4 955 51.7
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 8.3e-225 784.6 948 51.1
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.1e-224 784.3 957 51.5
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 3.2e-224 782.7 955 51.3
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 1.2e-223 780.8 952 51.6
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 2.7e-223 779.6 955 52.8
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.9e-223 778.5 955 51.1
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 1.1e-221 774.2 959 50.9
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.8e-220 769.6 955 51.6
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 2.8e-220 769.6 962 51.8
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 3.6e-220 769.2 945 52.3
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 1.0e-219 767.7 955 51.7
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 4.0e-219 765.8 952 50.4
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 2.0e-218 763.5 930 51.5
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 2.6e-218 763.1 911 50.5
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 9.8e-218 761.1 964 52.1
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.0e-215 753.4 957 51.6
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 6.0e-215 751.9 930 50.9
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 1.7e-214 750.4 1009 47.5
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 8.6e-214 748.0 944 51.7
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.5e-213 747.3 968 49.4
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 4.7e-212 742.3 956 50.1
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.7e-212 742.3 966 49.2
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.6e-210 736.5 964 49.5
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 3.5e-207 726.1 890 50.8
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 3.3e-205 719.5 961 46.9
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.7e-204 715.7 889 49.7
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.1e-203 714.5 884 50.0
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 6.8e-203 711.8 884 49.7
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 2.4e-200 703.4 956 48.2
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 6.0e-199 698.7 958 48.0
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 5.1e-198 695.7 944 49.6
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 1.8e-195 687.2 941 47.5
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 3.1e-195 686.4 858 49.4
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 1.5e-194 684.1 903 49.9
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 2.6e-194 683.3 927 48.1
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 3.8e-193 679.5 941 47.7
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 1.1e-192 677.9 606 62.7
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 3.5e-191 672.9 956 46.7
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 3.9e-190 669.5 974 47.0
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 8.7e-190 668.3 935 46.5
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 3.3e-189 666.4 943 48.7
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 2.8e-188 663.3 918 47.5
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 2.9e-185 653.3 955 46.4
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 1.9e-184 650.6 933 46.1
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 3.2e-184 649.8 928 45.6
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 1.6e-183 647.5 948 45.4
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 1.3e-182 644.4 968 45.7
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.1e-182 642.5 943 47.7
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 3.3e-181 639.8 903 47.3
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 7.4e-181 638.6 933 47.2
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 7.4e-181 638.6 936 44.3
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 1.6e-180 637.5 933 48.3
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 6.9e-179 632.1 944 44.3
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 1.9e-176 624.0 943 43.4
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 3.9e-174 616.3 953 45.8
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 1.9e-173 614.0 925 43.2
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.9e-173 614.0 914 45.1
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 5.6e-173 612.5 916 44.0
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 8.1e-172 608.6 908 46.6
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 9.0e-171 605.1 977 42.9
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 4.5e-170 602.8 977 43.4
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 4.9e-169 599.4 944 44.1
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 6.5e-169 599.0 955 42.3
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 3.2e-168 596.7 870 44.9
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 9.3e-168 595.1 799 48.1
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 7.9e-167 592.0 928 44.5
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 1.8e-166 590.9 870 44.7
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 3.0e-166 590.1 951 44.9
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 7.4e-165 585.5 614 57.8
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 2.8e-164 583.6 886 43.8
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 1.4e-163 581.3 1018 41.9
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 5.3e-163 579.3 901 44.2
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 6.9e-163 578.9 985 41.6
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 3.4e-162 576.6 981 43.9
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 3.8e-161 573.2 887 43.6
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 9.3e-160 568.5 909 45.7
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 1.3e-158 564.7 888 43.5
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 2.3e-158 563.9 937 40.9
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 3.9e-158 563.1 907 41.3
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 1.5e-157 561.2 943 41.9
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 2.2e-156 557.4 927 41.0
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 3.7e-156 556.6 929 43.3
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 1.3e-153 548.1 899 41.5
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 3.6e-151 540.0 902 42.5
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 2.3e-150 537.3 601 53.9
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 8.8e-150 535.4 901 42.0
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 2.5e-149 533.9 902 42.8
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 6.3e-148 529.3 872 41.2
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 2.0e-146 524.2 965 40.8
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 2.5e-144 517.3 880 43.9
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 2.1e-143 514.2 959 39.5
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 3.6e-143 513.5 928 40.5
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 7.9e-143 512.3 945 41.8
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 7.4e-141 505.8 895 40.6
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 9.7e-141 505.4 944 40.0
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 1.3e-140 505.0 881 43.2
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 2.4e-139 500.7 943 39.7
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 7.0e-139 499.2 961 40.4
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 9.1e-139 498.8 890 41.3
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 3.5e-138 496.9 881 43.1
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 7.7e-138 495.7 939 40.1
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 5.2e-134 483.0 950 39.3
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 7.0e-131 472.6 920 40.3
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 2.7e-130 470.7 507 56.6
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 3.8e-129 466.8 916 40.2
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 2.5e-128 464.2 904 39.4
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 4.7e-127 459.9 888 39.6
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 4.0e-126 456.8 900 38.6
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 1.5e-125 454.9 629 48.8
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 1.5e-125 454.9 944 38.8
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 2.6e-125 454.1 946 39.0
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 2.2e-124 451.1 813 40.7
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 2.2e-124 451.1 946 38.7
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 2.2e-124 451.1 946 38.7
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 7.7e-122 442.6 951 38.3
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 2.9e-121 440.7 952 38.1
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 1.5e-120 438.3 951 38.3
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 1.9e-120 438.0 710 43.2
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 1.2e-119 435.3 952 38.0
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.1e-119 434.5 704 43.3
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 2.1e-119 434.5 951 38.6
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 6.1e-119 433.0 813 39.0
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 9.8e-117 425.6 642 47.8
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 1.1e-115 422.2 948 36.5
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 5.0e-113 413.3 825 38.1
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 4.3e-112 410.2 910 38.0
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 1.2e-111 408.7 955 36.2
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 9.8e-109 399.1 978 35.5
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 6.2e-103 379.8 442 52.5
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 1.4e-99 368.6 482 47.9
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 5.4e-99 366.7 872 38.2
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 1.2e-93 349.0 499 45.9
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 3.2e-91 340.9 537 43.0
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 4.0e-86 323.9 953 33.2
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 5.2e-86 323.6 891 33.6
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 1.3e-84 318.9 919 32.5
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.9e-84 317.8 894 32.4
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 2.4e-78 298.1 284 58.8
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 4.3e-72 277.3 335 51.3
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.6e-71 274.2 856 32.5
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.2e-69 269.2 880 31.1
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 4.2e-67 260.8 845 31.4
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 1.4e-62 245.7 382 45.0
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 1.0e-57 229.6 349 47.3
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 4.3e-56 224.2 382 46.3
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 1.3e-55 222.6 225 57.8
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 4.8e-55 220.7 348 44.5
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 4.6e-50 204.1 768 28.9
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 2.5e-48 198.4 282 47.9
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 7.9e-42 176.8 288 39.2
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 5.7e-40 170.6 553 32.0
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 9.7e-40 169.9 131 64.9
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 1.4e-38 166.0 398 30.4
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 5.0e-36 157.5 366 37.2
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 1.0e-28 133.3 103 61.2
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.7e-28 132.5 266 36.1
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 5.0e-28 131.0 184 45.7
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 7.4e-24 117.1 124 54.8
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 9.7e-24 116.7 275 41.8
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 8.2e-23 113.6 148 45.9
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 1.0e-17 96.7 81 53.1
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.2e-13 83.2 114 43.9
Atru.chr6.2364 Acer truncatum HOM05D003655 ORTHO05D004065 3.5e-13 81.6 101 58.4
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 2.2e-12 79.0 87 48.3
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 3.8e-12 78.2 44 77.3
Solyc01g058690.1 Solanum lycopersicum HOM05D003655 ORTHO05D004065 6.5e-12 77.4 119 42.0
Sopen01g024690 Solanum pennellii HOM05D000006 ORTHO05D000695 7.2e-11 73.9 120 38.3
Ca_29533_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 2.3e-09 68.9 127 37.0
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 3.0e-09 68.6 139 35.3
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 5.2e-09 67.8 66 43.9


User provided reference genes

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