Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I01664 Eucalyptus grandis HOM05D004649 ORTHO05D005446 6.0e-247 857.1 434 100.0
Dinv33366 Davidia involucrata HOM05D004649 ORTHO05D005446 4.5e-178 628.2 403 77.7
Thecc.04G029900 Theobroma cacao HOM05D004649 ORTHO05D005446 1.0e-177 627.1 402 76.6
QL02p072453 Quercus lobata HOM05D004649 ORTHO05D005446 1.1e-176 623.6 402 77.4
CiPaw.04G034500 Carya illinoinensis HOM05D004649 ORTHO05D005446 7.3e-176 620.9 402 76.6
Dinv25679 Davidia involucrata HOM05D004649 ORTHO05D005446 6.1e-175 617.8 400 76.8
PGR142G2348 Punica granatum HOM05D004649 ORTHO05D005446 6.1e-175 617.8 401 77.1
Duzib264G0046 Durio zibethinus HOM05D004649 ORTHO05D005446 2.3e-174 615.9 402 75.6
Gorai.012G088900 Gossypium raimondii HOM05D004649 ORTHO05D005446 5.2e-174 614.8 402 75.6
Gorai.006G040000 Gossypium raimondii HOM05D004649 ORTHO05D005446 6.8e-174 614.4 402 74.9
TWI36G0899 Tripterygium wilfordii HOM05D004649 ORTHO05D005446 1.2e-173 613.6 402 75.9
CSS0030171 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 1.5e-173 613.2 402 76.1
CSS0047966 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 4.4e-173 611.7 402 76.1
Gohir.A05G340700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 9.8e-173 610.5 402 75.1
Gohir.D04G079000 Gossypium hirsutum HOM05D004649 ORTHO05D005446 9.8e-173 610.5 402 75.1
CANSAT64G0679 Cannabis sativa HOM05D004649 ORTHO05D005446 2.2e-172 609.4 402 75.6
Gohir.A09G034200 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.9e-172 609.0 402 74.1
Prupe.3G302400 Prunus persica HOM05D004649 ORTHO05D005446 3.7e-172 608.6 403 76.2
Atru.chr6.2512 Acer truncatum HOM05D004649 ORTHO05D005446 8.3e-172 607.4 402 74.6
Ciclev10015345m.g Citrus clementina HOM05D004649 ORTHO05D005446 1.1e-171 607.1 402 74.6
GSVIVG01001824001 Vitis vinifera HOM05D004649 ORTHO05D005446 1.4e-171 606.7 402 75.9
TAR371G0838 Trochodendron aralioides HOM05D004649 ORTHO05D005446 1.6e-170 603.2 402 73.9
MD09G1015400 Malus domestica HOM05D004649 ORTHO05D005446 3.5e-170 602.1 402 75.4
Glyma.05G075400 Glycine max HOM05D004649 ORTHO05D005446 6.0e-170 601.3 402 73.6
MD17G1015500 Malus domestica HOM05D004649 ORTHO05D005446 6.0e-170 601.3 402 75.1
RcHm_v2.0_Chr2g0174731 Rosa chinensis HOM05D004649 ORTHO05D005446 1.0e-169 600.5 400 75.2
Manes.17G106100 Manihot esculenta HOM05D004649 ORTHO05D005446 2.3e-169 599.4 402 74.9
Potri.001G334200 Populus trichocarpa HOM05D004649 ORTHO05D005446 2.3e-169 599.4 403 74.7
arahy.Tifrunner.gnm1.ann1.2RTQ1W Arachis hypogaea HOM05D004649 ORTHO05D005446 6.6e-169 597.8 405 74.3
MSTRG.15559 Avicennia marina HOM05D004649 ORTHO05D005446 1.1e-168 597.0 403 73.0
Actinidia05924 Actinidia chinensis HOM05D004649 ORTHO05D005446 9.5e-168 594.0 403 73.7
VMungo1080G0439 Vigna mungo HOM05D004649 ORTHO05D005446 3.6e-167 592.0 402 73.1
Nitab4.5_0001031g0020 Nicotiana tabacum HOM05D004649 ORTHO05D005446 2.3e-166 589.3 403 71.7
MELO3C008213.2 Cucumis melo HOM05D004649 ORTHO05D005446 4.0e-166 588.6 402 73.4
CsaV3_6G001150 Cucumis sativus L. HOM05D004649 ORTHO05D005446 5.2e-166 588.2 402 72.9
arahy.Tifrunner.gnm1.ann1.B3K3FC Arachis hypogaea HOM05D004649 ORTHO05D005446 6.8e-166 587.8 412 72.6
Phvul.004G055700 Phaseolus vulgaris HOM05D004649 ORTHO05D005446 6.8e-166 587.8 402 72.9
Gohir.D09G035100 Gossypium hirsutum HOM05D004649 ORTHO05D005446 8.9e-166 587.4 402 72.6
Nitab4.5_0000559g0250 Nicotiana tabacum HOM05D004649 ORTHO05D005446 8.9e-166 587.4 403 71.7
Glyma.19G075700 Glycine max HOM05D004649 ORTHO05D005446 1.2e-165 587.0 402 71.6
Migut.K01446 Erythranthe guttata HOM05D004649 ORTHO05D005446 9.8e-165 583.9 403 71.7
COL.COLO4_08766 Corchorus olitorius HOM05D004649 ORTHO05D005446 2.2e-164 582.8 399 75.4
FAN09G0187 Fragaria x ananassa HOM05D004649 ORTHO05D005446 8.3e-164 580.9 400 72.2
Sopen02g038570 Solanum pennellii HOM05D004649 ORTHO05D005446 8.3e-164 580.9 403 70.5
PGSC0003DMG400020222 Solanum tuberosum HOM05D004649 ORTHO05D005446 8.3e-164 580.9 403 70.2
Rhsim10G0008900 Rhododendron simsii HOM05D004649 ORTHO05D005446 1.4e-163 580.1 403 71.7
Solyc02g093920.2 Solanum lycopersicum HOM05D004649 ORTHO05D005446 1.4e-163 580.1 403 70.2
CAN.G473.77 Capsicum annuum HOM05D004649 ORTHO05D005446 4.1e-163 578.6 403 70.0
Duzib147G0539 Durio zibethinus HOM05D004649 ORTHO05D005446 4.1e-163 578.6 402 72.9
FvH4_6g52990 Fragaria vesca HOM05D004649 ORTHO05D005446 7.0e-163 577.8 400 72.0
Nitab4.5_0006819g0030 Nicotiana tabacum HOM05D004649 ORTHO05D005446 9.2e-163 577.4 410 69.5
FAN02G2492 Fragaria x ananassa HOM05D004649 ORTHO05D005446 3.5e-162 575.5 400 71.8
Cpa.g.sc130.9 Carica papaya HOM05D004649 ORTHO05D005446 7.8e-162 574.3 403 72.0
Lalb_Chr02g0157841 Lupinus albus HOM05D004649 ORTHO05D005446 6.6e-161 571.2 405 70.4
Ca_04417_v3 Cicer arietinum L. HOM05D004649 ORTHO05D005446 8.6e-161 570.9 404 70.0
Cc07_g00570 Coffea canephora HOM05D004649 ORTHO05D005446 2.5e-160 569.3 405 72.1
THA.LOC104821114 Tarenaya hassleriana HOM05D004649 ORTHO05D005446 2.5e-160 569.3 402 70.4
vmacro05936 Vaccinium macrocarpon HOM05D004649 ORTHO05D005446 2.1e-159 566.2 400 69.5
CiPaw.03G052200 Carya illinoinensis HOM05D004649 ORTHO05D005446 3.6e-159 565.5 402 70.6
TPR.G7524 Trifolium pratense HOM05D004649 ORTHO05D005446 6.2e-159 564.7 405 69.6
HanXRQChr14g0450901 Helianthus annuus HOM05D004649 ORTHO05D005446 1.1e-158 563.9 403 68.2
SGA_v2.0_scaffold154G37160 Striga asiatica HOM05D004649 ORTHO05D005446 1.4e-158 563.5 401 68.8
Medtr6g023350 Medicago truncatula HOM05D004649 ORTHO05D005446 3.1e-158 562.4 405 69.9
AUR62033709 Chenopodium quinoa HOM05D004649 ORTHO05D005446 5.2e-158 561.6 403 68.2
AUR62036815 Chenopodium quinoa HOM05D004649 ORTHO05D005446 5.2e-158 561.6 403 69.0
DCAR_011306 Daucus carota HOM05D004649 ORTHO05D005446 6.8e-158 561.2 403 67.7
Lj1g0022023 Lotus japonicus HOM05D004649 ORTHO05D005446 6.8e-158 561.2 404 69.6
HanXRQChr07g0198311 Helianthus annuus HOM05D004649 ORTHO05D005446 4.9e-156 555.1 404 67.3
ClCG11G006900 Citrullus lanatus HOM05D004649 ORTHO05D005446 4.1e-155 552.0 436 66.1
FAN05G5354 Fragaria x ananassa HOM05D004649 ORTHO05D005446 4.1e-155 552.0 442 65.2
Sc07g0004210 Simmondsia chinensis HOM05D004649 ORTHO05D005446 1.6e-154 550.1 383 70.8
Haze_14832 Corylus avellana HOM05D004649 ORTHO05D005446 3.5e-154 548.9 435 66.2
Aqoxy5G03494 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 2.3e-153 546.2 406 66.7
CAN.G1965.13 Capsicum annuum HOM05D004649 ORTHO05D005446 3.9e-153 545.4 402 68.4
CDE09G0552 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 6.6e-153 544.7 402 65.2
Lsat_1_v5_gn_2_93941 Lactuca sativa HOM05D004649 ORTHO05D005446 1.9e-152 543.1 401 65.6
Nn2g10549 Nelumbo nucifera HOM05D004649 ORTHO05D005446 1.6e-151 540.0 402 67.4
ECA238G0199 Erigeron canadensis HOM05D004649 ORTHO05D005446 6.2e-151 538.1 403 65.5
Aa31LG11G15040 Aethionema arabicum HOM05D004649 ORTHO05D005446 3.1e-150 535.8 403 67.0
Psat1g084880 Pisum sativum HOM05D004649 ORTHO05D005446 1.5e-149 533.5 405 66.2
Sed0002339 Sechium edule HOM05D004649 ORTHO05D005446 3.8e-148 528.9 402 66.2
Peaxi162Scf00700g00129 Petunia axillaris HOM05D004649 ORTHO05D005446 1.1e-147 527.3 401 68.8
PSO782G5348 Papaver somniferum HOM05D004649 ORTHO05D005446 4.2e-147 525.4 402 66.2
AT5G14250 Arabidopsis thaliana HOM05D004649 ORTHO05D005446 1.6e-146 523.5 403 66.3
Gohir.D10G084700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 3.5e-146 522.3 402 65.4
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 1.0e-145 520.8 403 65.0
BraA02t05210Z Brassica rapa HOM05D004649 ORTHO05D005446 1.0e-145 520.8 403 65.0
Sp6g29780 Schrenkiella parvula HOM05D004649 ORTHO05D005446 1.3e-145 520.4 403 65.0
Peaxi162Scf00420g00411 Petunia axillaris HOM05D004649 ORTHO05D005446 1.7e-145 520.0 411 64.5
Thhalv10013615m.g Eutrema salsugineum HOM05D004649 ORTHO05D005446 2.3e-145 519.6 403 65.0
Carub.0006s1245 Capsella rubella HOM05D004649 ORTHO05D005446 3.0e-145 519.2 403 65.3
C02p06640 Brassica napus HOM05D004649 ORTHO05D005446 8.7e-145 517.7 404 64.9
HPP92_017768 Vanilla planifolia HOM05D004649 ORTHO05D005446 1.5e-144 516.9 403 61.8
BcaC03g13505 Brassica carinata HOM05D004649 ORTHO05D005446 1.9e-144 516.5 404 64.9
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 1.9e-144 516.5 404 64.9
Gorai.011G092400 Gossypium raimondii HOM05D004649 ORTHO05D005446 2.5e-144 516.2 402 66.9
Nitab4.5_0002887g0140 Nicotiana tabacum HOM05D004649 ORTHO05D005446 5.6e-144 515.0 403 65.3
BcaNung03172 Brassica carinata HOM05D004649 ORTHO05D005446 1.6e-143 513.5 400 64.2
Hund06757 Selenicereus undatus HOM05D004649 ORTHO05D005446 2.0e-141 506.5 403 64.5
AL6G24930 Arabidopsis lyrata HOM05D004649 ORTHO05D005446 1.7e-140 503.4 367 70.0
DCAR_015086 Daucus carota HOM05D004649 ORTHO05D005446 2.2e-140 503.1 401 60.8
Lj7C608T4 Lonicera japonica HOM05D004649 ORTHO05D005446 2.9e-140 502.7 402 64.2
Os08g0119000 Oryza sativa ssp. japonica HOM05D004649 ORTHO05D005446 8.4e-140 501.1 405 62.7
BcaB08g36970 Brassica carinata HOM05D004649 ORTHO05D005446 1.1e-139 500.7 403 64.3
A03p06510 Brassica napus HOM05D004649 ORTHO05D005446 1.9e-139 500.0 403 63.3
BraA03t09983Z Brassica rapa HOM05D004649 ORTHO05D005446 1.9e-139 500.0 403 63.5
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 8.7e-137 491.1 403 62.5
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 8.7e-137 491.1 403 62.5
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 9.6e-136 487.6 403 62.3
Aqoxy3G01472 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 3.6e-135 485.7 404 60.4
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 4.8e-135 485.3 403 61.8
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 6.2e-135 485.0 403 62.0
unitig_52.g17652 Utricularia gibba HOM05D004649 ORTHO05D005446 1.4e-134 483.8 414 61.8
BcaB01g06336 Brassica carinata HOM05D004649 ORTHO05D005446 5.3e-134 481.9 403 60.8
Potri.017G066300 Populus trichocarpa HOM05D004649 ORTHO05D005446 9.0e-134 481.1 301 78.4
Manes.15G158000 Manihot esculenta HOM05D004649 ORTHO05D005446 1.2e-133 480.7 290 83.1
Zm00001eb261210 Zea mays HOM05D004649 ORTHO05D005446 1.5e-133 480.3 405 61.2
CARHR199090 Cardamine hirsuta HOM05D004649 ORTHO05D005446 2.7e-130 469.5 364 64.8
Sed0000018 Sechium edule HOM05D004649 ORTHO05D005446 1.3e-127 460.7 402 59.5
ATR0124G048 Amborella trichopoda HOM05D004649 ORTHO05D005446 5.3e-126 455.3 350 65.1
CDE02G4363 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 1.2e-125 454.1 424 56.8
Pp3c11_20060 Physcomitrium patens HOM05D004649 ORTHO05D005446 1.3e-119 434.1 409 53.1
Mapoly0005s0216 Marchantia polymorpha HOM05D004649 ORTHO05D005446 1.6e-119 433.7 409 54.8
SMO351G0195 Selaginella moellendorffii HOM05D004649 ORTHO05D005446 1.6e-119 433.7 406 53.9
EL10As11g23981 Beta vulgaris HOM05D004649 ORTHO05D005446 5.8e-117 425.2 385 58.4
PSO017G3153 Papaver somniferum HOM05D004649 ORTHO05D005446 3.8e-116 422.5 400 57.2
AagrBONN_evm.TU.Sc2ySwM_368.1057 Anthoceros agrestis HOM05D004649 ORTHO05D005446 8.4e-116 421.4 433 52.0
Nn3g16527 Nelumbo nucifera HOM05D004649 ORTHO05D005446 1.5e-109 400.6 284 66.9
CBR_g75710 Chara braunii HOM05D004649 ORTHO05D005446 7.9e-106 388.3 411 49.1
Sabra16G0215300 Salix brachista HOM05D004649 ORTHO05D005446 1.7e-100 370.5 219 85.4
Hma1.2p1_0571F.1_g180750 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 1.8e-97 360.5 219 83.6
Zm00001eb173540 Zea mays HOM05D004649 ORTHO05D005446 6.7e-97 358.6 336 56.2
BcaB01g05123 Brassica carinata HOM05D004649 ORTHO05D005446 8.0e-90 335.1 332 55.1
C03p07530 Brassica napus HOM05D004649 ORTHO05D005446 4.4e-88 329.3 333 55.0
Actinidia36180 Actinidia chinensis HOM05D004649 ORTHO05D005446 2.6e-85 320.1 403 48.4
Cre16.g671100 Chlamydomonas reinhardtii HOM05D004649 ORTHO05D005446 2.3e-73 280.4 421 39.4
Gohir.A01G185660 Gossypium hirsutum HOM05D004649 ORTHO05D005446 3.1e-70 270.0 214 64.0
CAN.G473.64 Capsicum annuum HOM05D004649 ORTHO05D005446 1.1e-59 235.0 192 63.0
PRCOL_00002547 Prasinoderma coloniale HOM05D004649 ORTHO05D005446 1.6e-58 231.1 326 39.6
BcaC04g18970 Brassica carinata HOM05D004649 ORTHO05D005446 5.4e-54 216.1 373 39.9
C09p61600 Brassica napus HOM05D004649 ORTHO05D005446 1.6e-53 214.5 303 44.2
BolC9t59028H Brassica oleracea HOM05D004649 ORTHO05D005446 3.7e-47 193.4 305 41.6
A03p07400 Brassica napus HOM05D004649 ORTHO05D005446 3.5e-45 186.8 174 58.0
Sabra07G0059200 Salix brachista HOM05D004649 ORTHO05D005446 8.6e-44 182.2 251 45.4
SEGI_26946 Sequoiadendron giganteum HOM05D004649 ORTHO05D005446 2.5e-43 180.6 140 60.7
BraA03t10063Z Brassica rapa HOM05D004649 ORTHO05D005446 3.2e-38 163.7 174 51.7
MCO12G022 Micromonas commoda HOM05D004649 ORTHO05D005446 6.2e-34 149.4 315 32.4
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 6.4e-31 139.4 167 47.9
FAN09G3197 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.5e-27 128.3 119 52.9
QL12p000006 Quercus lobata HOM05D004649 ORTHO05D005446 9.3e-22 109.0 77 67.5
QL12p000135 Quercus lobata HOM05D004649 ORTHO05D005446 9.3e-22 109.0 77 67.5
Duzib268G1750 Durio zibethinus HOM05D004649 ORTHO05D005446 7.9e-21 105.9 125 44.0
BolC3t13254H Brassica oleracea HOM05D004649 ORTHO05D005446 1.9e-19 101.3 82 67.1
Cfa025081 Carpinus fangiana HOM05D004649 ORTHO05D005446 2.5e-19 100.9 441 24.5
BcaB08g36975 Brassica carinata HOM05D005656 ORTHO05D007094 2.4e-17 94.4 66 72.7
Oeu042415.1 Olea europaea HOM05D004649 ORTHO05D005446 1.4e-14 85.1 73 63.0
Aqoxy5G03476 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 1.9e-14 84.7 134 40.3
Hma1.2p1_0571F.1_g180740 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 3.9e-12 77.0 62 58.1
FvH4_2g01181 Fragaria vesca HOM05D000564 ORTHO05D005446 9.6e-11 72.4 53 73.6
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 6.2e-10 69.7 49 69.4
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 6.2e-10 69.7 49 69.4
ECA232G4246 Erigeron canadensis HOM05D004649 ORTHO05D005446 1.5e-08 65.1 75 44.0
FvH4_6g52500 Fragaria vesca HOM05D004649 ORTHO05D005446 3.8e-07 60.5 48 54.2
FAN14G5770 Fragaria x ananassa HOM05D004649 ORTHO05D005446 4.9e-07 60.1 48 54.2
CARHR069530 Cardamine hirsuta HOM05D002716 ORTHO05D003324 6.5e-07 59.7 254 25.6
Thhalv10007479m.g Eutrema salsugineum HOM05D002716 ORTHO05D003324 1.1e-06 58.9 202 25.2
Ah.00g000740 Amaranthus hybridus HOM05D002716 ORTHO05D003324 1.9e-06 58.2 134 26.1
Carub.0001s1973 Capsella rubella HOM05D002716 ORTHO05D003324 1.9e-06 58.2 202 25.2
CARHR020700 Cardamine hirsuta HOM05D002716 ORTHO05D003324 2.5e-06 57.8 202 25.2
Sp1g17970 Schrenkiella parvula HOM05D002716 ORTHO05D003324 2.5e-06 57.8 202 25.2
AL1G33040 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 3.2e-06 57.4 202 25.2
AT1G20200 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 3.2e-06 57.4 202 25.2
BcaC08g47308 Brassica carinata HOM05D002716 ORTHO05D003324 3.2e-06 57.4 202 25.7
A07p41500 Brassica napus HOM05D002716 ORTHO05D003324 3.2e-06 57.4 202 25.7
C06p49910 Brassica napus HOM05D002716 ORTHO05D003324 3.2e-06 57.4 202 25.7
BolC6t40029H Brassica oleracea HOM05D002716 ORTHO05D003324 3.2e-06 57.4 202 25.7
BraA07t31682Z Brassica rapa HOM05D002716 ORTHO05D003324 3.2e-06 57.4 202 25.7
Sp5g31110 Schrenkiella parvula HOM05D002716 ORTHO05D003324 3.2e-06 57.4 202 25.2
BcaB03g12876 Brassica carinata HOM05D002716 ORTHO05D003324 4.2e-06 57.0 202 25.2
AL2G36010 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 5.5e-06 56.6 254 25.2
AT1G75990 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 9.3e-06 55.8 254 24.8
Carub.0002s2288 Capsella rubella HOM05D002716 ORTHO05D003324 9.3e-06 55.8 254 24.8


User provided reference genes

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