Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I01451 Eucalyptus grandis HOM05D005442 ORTHO05D006450 7.0e-243 843.6 438 100.0
Actinidia39159 Actinidia chinensis HOM05D005442 ORTHO05D006450 4.9e-87 325.9 489 46.6
Actinidia21468 Actinidia chinensis HOM05D005442 ORTHO05D006450 7.8e-85 318.5 492 46.3
TWI31G1375 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 1.7e-84 317.4 486 48.1
Dinv41924 Davidia involucrata HOM05D005442 ORTHO05D006450 1.1e-83 314.7 314 57.3
TAR376G0424 Trochodendron aralioides HOM05D005442 ORTHO05D006450 1.1e-83 314.7 335 56.1
GSVIVG01023996001 Vitis vinifera HOM05D005442 ORTHO05D006450 1.1e-81 308.1 493 44.6
ClCG02G012030 Citrullus lanatus HOM05D005442 ORTHO05D006450 6.8e-81 305.4 454 46.9
Sc08g0002780 Simmondsia chinensis HOM05D005442 ORTHO05D006450 3.4e-80 303.1 445 46.5
Thecc.02G056900 Theobroma cacao HOM05D005442 ORTHO05D006450 9.8e-80 301.6 504 43.1
TAR369G0572 Trochodendron aralioides HOM05D005442 ORTHO05D006450 2.2e-79 300.4 363 53.2
vmacro17319 Vaccinium macrocarpon HOM05D005442 ORTHO05D006450 2.2e-79 300.4 459 46.0
CiPaw.05G084400 Carya illinoinensis HOM05D005442 ORTHO05D006450 1.9e-78 297.4 444 48.2
Sed0001500 Sechium edule HOM05D005442 ORTHO05D006450 4.1e-78 296.2 482 44.2
PGR142G2067 Punica granatum HOM05D005442 ORTHO05D006450 7.1e-78 295.4 459 45.3
CSS0044298 Camellia sinensis var. sinensis HOM05D005442 ORTHO05D006450 4.6e-77 292.7 484 43.2
Haze_13370 Corylus avellana HOM05D005442 ORTHO05D006450 1.7e-76 290.8 401 50.9
Atru.chr5.3384 Acer truncatum HOM05D005442 ORTHO05D006450 6.6e-76 288.9 308 53.6
Ciclev10028168m.g Citrus clementina HOM05D005442 ORTHO05D006450 1.1e-75 288.1 491 43.2
Lsat_1_v5_gn_6_13820 Lactuca sativa HOM05D005442 ORTHO05D006450 2.8e-74 283.5 392 46.9
CsaV3_2G016200 Cucumis sativus L. HOM05D005442 ORTHO05D006450 2.6e-72 276.9 390 47.9
QL11p051413 Quercus lobata HOM05D005442 ORTHO05D006450 6.4e-71 272.3 494 43.1
MELO3C020828.2 Cucumis melo HOM05D005442 ORTHO05D006450 8.3e-71 271.9 523 40.9
MBI11_g07617_MAGBIO Magnolia biondii HOM05D005442 ORTHO05D006450 1.4e-70 271.2 308 51.3
Manes.01G140900 Manihot esculenta HOM05D005442 ORTHO05D006450 1.4e-70 271.2 471 41.6
Sopen01g053760 Solanum pennellii HOM05D005442 ORTHO05D006450 1.2e-69 268.1 457 42.9
PGSC0003DMG400006166 Solanum tuberosum HOM05D005442 ORTHO05D006450 3.5e-69 266.5 477 43.6
Solyc01g111720.4 Solanum lycopersicum HOM05D005442 ORTHO05D006450 1.0e-68 265.0 456 44.7
Cpa.g.sc20.103 Carica papaya HOM05D005442 ORTHO05D006450 5.1e-68 262.7 493 41.4
CANSAT56G0103 Cannabis sativa HOM05D005442 ORTHO05D006450 6.6e-68 262.3 364 48.1
Nn1g06499 Nelumbo nucifera HOM05D005442 ORTHO05D006450 1.9e-67 260.8 201 65.7
Hund06446 Selenicereus undatus HOM05D005442 ORTHO05D006450 2.5e-67 260.4 444 42.1
Ca_03302_v3 Cicer arietinum L. HOM05D005442 ORTHO05D006450 7.3e-67 258.8 392 44.1
Peaxi162Scf00362g00530 Petunia axillaris HOM05D005442 ORTHO05D006450 6.2e-66 255.8 483 41.6
Lj5g0013939 Lotus japonicus HOM05D005442 ORTHO05D006450 1.1e-65 255.0 388 44.8
Actinidia32035 Actinidia chinensis HOM05D005442 ORTHO05D006450 1.8e-65 254.2 427 43.1
Sabra09G0106500 Salix brachista HOM05D005442 ORTHO05D006450 5.2e-65 252.7 495 37.8
ATR0763G134 Amborella trichopoda HOM05D005442 ORTHO05D006450 6.8e-65 252.3 191 68.1
AUR62013010 Chenopodium quinoa HOM05D005442 ORTHO05D006450 4.9e-63 246.1 219 59.4
PSO675G1865 Papaver somniferum HOM05D005442 ORTHO05D006450 8.4e-63 245.4 454 41.4
MSTRG.16924 Avicennia marina HOM05D005442 ORTHO05D006450 1.4e-62 244.6 471 40.3
Lalb_Chr06g0163701 Lupinus albus HOM05D005442 ORTHO05D006450 5.4e-62 242.7 358 45.8
CDE04G0468 Ceratophyllum demersum HOM05D005442 ORTHO05D000996 1.2e-61 241.5 201 61.2
AUR62010020 Chenopodium quinoa HOM05D005442 ORTHO05D006450 1.6e-61 241.1 219 58.4
Gorai.005G254900 Gossypium raimondii HOM05D005442 ORTHO05D006450 2.7e-61 240.4 421 42.0
PSO541G1416 Papaver somniferum HOM05D005442 ORTHO05D006450 3.5e-61 240.0 450 42.2
CDE02G3112 Ceratophyllum demersum HOM05D005442 ORTHO05D006450 6.0e-61 239.2 211 58.8
Gohir.A03G205700 Gossypium hirsutum HOM05D005442 ORTHO05D006450 6.0e-61 239.2 417 42.0
Gohir.D02G227000 Gossypium hirsutum HOM05D005442 ORTHO05D006450 5.1e-60 236.1 417 41.7
Medtr1g112820 Medicago truncatula HOM05D005442 ORTHO05D002291 1.1e-59 235.0 292 47.6
ECA233G3196 Erigeron canadensis HOM05D005442 ORTHO05D006450 2.1e-58 230.7 446 39.9
Glyma.10G282700 Glycine max HOM05D005442 ORTHO05D006450 2.8e-58 230.3 482 37.3
Psat6g232320 Pisum sativum HOM05D005442 ORTHO05D006450 6.2e-58 229.2 452 39.8
arahy.Tifrunner.gnm1.ann1.WUXL4S Arachis hypogaea HOM05D005442 ORTHO05D006450 8.1e-58 228.8 459 38.8
arahy.Tifrunner.gnm1.ann1.ZGQ44R Arachis hypogaea HOM05D005442 ORTHO05D006450 1.8e-57 227.6 453 38.9
Cc09_g09800 Coffea canephora HOM05D005442 ORTHO05D006450 1.8e-57 227.6 455 38.5
Glyma.20G106900 Glycine max HOM05D005442 ORTHO05D006450 4.0e-57 226.5 479 38.2
MD05G1123900 Malus domestica HOM05D005442 ORTHO05D006450 5.3e-57 226.1 477 38.2
EL10Ac9g21351 Beta vulgaris HOM05D005442 ORTHO05D006450 6.9e-57 225.7 442 39.6
Phvul.007G018400 Phaseolus vulgaris HOM05D005442 ORTHO05D006450 2.0e-56 224.2 487 38.2
unitig_744.g24278 Utricularia gibba HOM05D005442 ORTHO05D006450 9.9e-56 221.9 302 47.7
Aqoxy6G02079 Aquilegia oxysepala HOM05D005442 ORTHO05D006450 3.8e-55 219.9 309 44.0
Duzib132G0277 Durio zibethinus HOM05D005442 ORTHO05D006450 6.4e-55 219.2 373 42.9
DCAR_011887 Daucus carota HOM05D005442 ORTHO05D006450 1.1e-54 218.4 306 42.2
FvH4_2g15550 Fragaria vesca HOM05D005442 ORTHO05D006450 2.4e-54 217.2 308 45.5
COL.COLO4_17367 Corchorus olitorius HOM05D005442 ORTHO05D006450 4.2e-54 216.5 307 45.6
FAN15G0807 Fragaria x ananassa HOM05D005442 ORTHO05D006450 7.1e-54 215.7 296 47.6
RcHm_v2.0_Chr6g0278721 Rosa chinensis HOM05D005442 ORTHO05D006450 7.1e-54 215.7 439 39.4
SGA_v2.0_scaffold58G20356 Striga asiatica HOM05D002097 ORTHO05D002248 1.6e-53 214.5 465 37.0
HPP92_022198 Vanilla planifolia HOM05D005442 ORTHO05D006450 2.7e-53 213.8 237 52.7
FAN24G2500 Fragaria x ananassa HOM05D005442 ORTHO05D006450 7.9e-53 212.2 380 41.3
Aa31LG8G14120 Aethionema arabicum HOM05D005442 ORTHO05D006450 1.7e-52 211.1 391 41.4
HPP92_022180 Vanilla planifolia HOM05D005442 ORTHO05D006450 3.0e-52 210.3 338 44.1
FAN27G2972 Fragaria x ananassa HOM05D005442 ORTHO05D006450 6.6e-52 209.1 383 40.5
THA.LOC104807379 Tarenaya hassleriana HOM05D005442 ORTHO05D006450 1.5e-51 208.0 371 42.6
Os02g0101100 Oryza sativa ssp. japonica HOM05D005442 ORTHO05D006450 4.3e-51 206.5 298 44.0
Sp3g30220 Schrenkiella parvula HOM05D005442 ORTHO05D006450 9.6e-51 205.3 405 37.3
Thhalv10022629m.g Eutrema salsugineum HOM05D005442 ORTHO05D006450 4.8e-50 203.0 291 43.3
Prupe.8G167900 Prunus persica HOM05D005442 ORTHO05D006450 6.2e-50 202.6 443 37.0
FAN20G2789 Fragaria x ananassa HOM05D005442 ORTHO05D006450 1.4e-49 201.4 383 40.2
Zm00001eb134390 Zea mays HOM05D005442 ORTHO05D006450 4.0e-49 199.9 405 39.5
BcaB03g16428 Brassica carinata HOM05D005442 ORTHO05D006450 6.9e-49 199.1 427 35.6
BraA07t28205Z Brassica rapa HOM05D005442 ORTHO05D006450 9.0e-49 198.7 387 36.7
A07p04140 Brassica napus HOM05D005442 ORTHO05D006450 1.2e-48 198.4 387 36.7
Migut.B00066 Erythranthe guttata HOM05D005442 ORTHO05D006450 2.9e-47 193.7 432 38.2
BcaC06g36199 Brassica carinata HOM05D005442 ORTHO05D006450 1.9e-46 191.0 427 35.4
BolC7t41079H Brassica oleracea HOM05D005442 ORTHO05D006450 1.9e-46 191.0 427 35.4
Atru.chr3.3284 Acer truncatum HOM05D005442 ORTHO05D006450 3.2e-46 190.3 190 56.3
C07p06570 Brassica napus HOM05D005442 ORTHO05D006450 5.4e-46 189.5 427 35.1
AL1G48920 Arabidopsis lyrata HOM05D005442 ORTHO05D006450 9.3e-46 188.7 398 36.2
Carub.0001s3251 Capsella rubella HOM05D005442 ORTHO05D006450 4.6e-45 186.4 395 38.0
AT1G34360 Arabidopsis thaliana HOM05D005442 ORTHO05D006450 1.3e-44 184.9 427 37.0
Rhsim05G0053500 Rhododendron simsii HOM05D005442 ORTHO05D006450 1.8e-44 184.5 380 41.1
SalBow1G0486 Salvia bowleyana HOM05D005442 ORTHO05D006450 3.3e-43 180.3 470 34.7
TWI79G1761 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 6.2e-42 176.0 216 50.0
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 1.1e-41 175.3 156 60.3
Lj5A177G53 Lonicera japonica HOM05D005442 ORTHO05D006450 1.8e-41 174.5 175 54.9
CARHR033820 Cardamine hirsuta HOM05D005442 ORTHO05D006450 9.0e-41 172.2 381 36.0
Ah.01g023170 Amaranthus hybridus HOM05D005442 ORTHO05D006450 2.0e-40 171.0 323 39.6
TPR.G2470 Trifolium pratense HOM05D005442 ORTHO05D006450 6.5e-39 166.0 347 37.8
HPP92_028071 Vanilla planifolia HOM05D005442 ORTHO05D006450 2.5e-38 164.1 316 40.8
HanXRQChr08g0227271 Helianthus annuus HOM05D005442 ORTHO05D006450 4.8e-34 149.8 358 35.8
Mapoly0037s0141 Marchantia polymorpha HOM05D005442 ORTHO05D006450 1.7e-31 141.4 246 38.6
VMungo0720G2182 Vigna mungo HOM05D005442 ORTHO05D006450 3.2e-30 137.1 354 33.9
Cc02_g27640 Coffea canephora HOM05D005442 ORTHO05D006450 1.6e-29 134.8 317 37.2
Oeu015514.1 Olea europaea HOM05D005442 ORTHO05D006450 1.3e-28 131.7 99 60.6
Pp3c27_2790 Physcomitrium patens HOM05D005442 ORTHO05D006450 8.7e-28 129.0 214 40.2
Lj5A177G54 Lonicera japonica HOM05D005442 ORTHO05D006450 1.1e-27 128.6 201 48.8
Pp3c16_14950 Physcomitrium patens HOM05D005442 ORTHO05D006450 1.5e-27 128.3 203 40.9
CAN.G588.93 Capsicum annuum HOM05D005442 ORTHO05D006450 1.9e-27 127.9 172 44.2
SHI05769 Sapria himalayana HOM05D005442 ORTHO05D006450 3.4e-24 117.1 398 31.4
SMO171G0119 Selaginella moellendorffii HOM05D005442 ORTHO05D006450 6.1e-21 106.3 182 36.3
Cfa023336 Carpinus fangiana HOM05D005442 ORTHO05D006450 1.0e-20 105.5 287 36.6
C03p57670 Brassica napus HOM05D005442 ORTHO05D006450 9.7e-19 99.0 115 43.5
AagrBONN_evm.TU.Sc2ySwM_344.3952 Anthoceros agrestis HOM05D005442 ORTHO05D006450 1.3e-18 98.6 244 32.0
Rhsim05G0053300 Rhododendron simsii HOM05D005442 ORTHO05D006450 1.4e-17 95.1 124 47.6
BolC3t18042H Brassica oleracea HOM05D005442 ORTHO05D013811 5.3e-17 93.2 114 41.2
BcaC01g02969 Brassica carinata HOM05D005442 ORTHO05D006450 1.2e-16 92.0 107 43.9
CBR_g29438 Chara braunii HOM05D005442 ORTHO05D006450 1.2e-16 92.0 187 35.3
C03p57690 Brassica napus HOM05D005442 ORTHO05D013811 1.3e-15 88.6 114 41.2
MD10G1126600 Malus domestica HOM05D005442 ORTHO05D006450 9.4e-14 82.4 80 53.8
Rhsim09G0155200 Rhododendron simsii HOM05D005442 ORTHO05D006450 2.1e-13 81.3 59 61.0
Cfa021053 Carpinus fangiana HOM05D004690 ORTHO05D005527 1.4e-12 78.6 183 32.2
Actinidia39161 Actinidia chinensis HOM05D005442 ORTHO05D006450 2.3e-12 77.8 260 33.1
Oeu032532.1 Olea europaea HOM05D005442 ORTHO05D006450 2.3e-12 77.8 190 36.3
Actinidia21470 Actinidia chinensis HOM05D005442 ORTHO05D006450 3.3e-11 73.9 71 57.7
CAN.G588.92 Capsicum annuum HOM05D005442 ORTHO05D006450 9.7e-11 72.4 260 34.2
CBR_g7972 Chara braunii HOM05D004690 ORTHO05D005527 2.8e-10 70.9 178 31.5
Mapoly0090s0068 Marchantia polymorpha HOM05D004690 ORTHO05D005527 3.7e-10 70.5 175 28.0
MCO13G079 Micromonas commoda HOM05D005442 ORTHO05D006450 3.7e-10 70.5 126 34.1
Potri.009G137000 Populus trichocarpa HOM05D005442 ORTHO05D006450 3.7e-10 70.5 263 30.8
Pp3c14_5800 Physcomitrium patens HOM05D004690 ORTHO05D005527 1.1e-09 68.9 221 29.4
SMO353G0310 Selaginella moellendorffii HOM05D004690 ORTHO05D005527 2.4e-09 67.8 212 25.0
Pp3c2_19940 Physcomitrium patens HOM05D004690 ORTHO05D005527 5.3e-09 66.6 224 29.0
BolC3t18043H Brassica oleracea HOM05D008551 ORTHO05D006450 2.0e-08 64.7 78 39.7
AagrBONN_evm.TU.Sc2ySwM_228.3886 Anthoceros agrestis HOM05D004690 ORTHO05D005527 4.5e-08 63.5 179 27.4
Sed0014938 Sechium edule HOM05D004690 ORTHO05D005527 7.7e-08 62.8 141 29.8
Nitab4.5_0003698g0060 Nicotiana tabacum HOM05D005442 ORTHO05D006450 1.0e-07 62.4 243 32.9
Aa31LG2G19730 Aethionema arabicum HOM05D004690 ORTHO05D005527 1.7e-07 61.6 177 29.4
MCO15G501 Micromonas commoda HOM05D004690 ORTHO05D005527 1.7e-07 61.6 213 26.8
THA.LOC104803547 Tarenaya hassleriana HOM05D004690 ORTHO05D005527 1.7e-07 61.6 192 28.1
Lsat_1_v5_gn_1_105560 Lactuca sativa HOM05D003178 ORTHO05D003636 2.9e-07 60.8 59 50.8
Medtr4g130530 Medicago truncatula HOM05D004690 ORTHO05D005527 2.9e-07 60.8 150 29.3
DCAR_017916 Daucus carota HOM05D004690 ORTHO05D005527 3.8e-07 60.5 176 27.8
Psat7g006440 Pisum sativum HOM05D004690 ORTHO05D005527 6.5e-07 59.7 128 32.0
CsaV3_2G007620 Cucumis sativus L. HOM05D004690 ORTHO05D005527 8.5e-07 59.3 140 32.1
BcaC01g02968 Brassica carinata HOM05D005442 ORTHO05D006450 1.5e-06 58.5 123 31.7
SEGI_12526 Sequoiadendron giganteum HOM05D005442 ORTHO05D006450 1.5e-06 58.5 42 61.9
FAN26G1928 Fragaria x ananassa HOM05D004690 ORTHO05D005527 2.5e-06 57.8 112 33.0
PRCOL_00002519 Prasinoderma coloniale HOM05D004690 ORTHO05D005527 2.5e-06 57.8 159 28.3
Potri.018G104000 Populus trichocarpa HOM05D004690 ORTHO05D005527 3.2e-06 57.4 195 23.6
Gohir.A07G037900 Gossypium hirsutum HOM05D004690 ORTHO05D005527 4.2e-06 57.0 157 28.7
Gohir.D07G042000 Gossypium hirsutum HOM05D004690 ORTHO05D005527 4.2e-06 57.0 157 28.7
Gorai.001G044800 Gossypium raimondii HOM05D004690 ORTHO05D005527 4.2e-06 57.0 157 28.7
Sed0017216 Sechium edule HOM05D004690 ORTHO05D005527 5.5e-06 56.6 140 29.3
Lsat_1_v5_gn_5_89380 Lactuca sativa HOM05D004690 ORTHO05D005527 7.2e-06 56.2 208 26.0
COL.COLO4_23958 Corchorus olitorius HOM05D004690 ORTHO05D005527 9.4e-06 55.8 136 30.1
Glyma.17G072300 Glycine max HOM05D004690 ORTHO05D005527 9.4e-06 55.8 112 29.5
Thecc.09G151500 Theobroma cacao HOM05D004690 ORTHO05D005527 9.4e-06 55.8 112 31.2


User provided reference genes

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