Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I01322 Eucalyptus grandis HOM05D001222 ORTHO05D045348 3.0e-41 171.4 85 100.0
Eucgr.I01321 Eucalyptus grandis HOM05D001222 ORTHO05D045348 7.6e-37 156.8 81 96.3
QL11p045858 Quercus lobata HOM05D001222 ORTHO05D001195 5.9e-13 77.4 54 64.8
Cfa005094 Carpinus fangiana HOM05D001222 ORTHO05D001195 1.0e-12 76.6 54 63.0
Haze_02271 Corylus avellana HOM05D001222 ORTHO05D001195 1.0e-12 76.6 54 63.0
Haze_02277 Corylus avellana HOM05D001222 ORTHO05D001195 1.0e-12 76.6 54 63.0
Glyma.04G009000 Glycine max HOM05D001222 ORTHO05D001195 1.0e-12 76.6 59 61.0
COL.COLO4_26031 Corchorus olitorius HOM05D001222 ORTHO05D001195 2.2e-12 75.5 54 64.8
Actinidia00566 Actinidia chinensis HOM05D001222 ORTHO05D001195 2.9e-12 75.1 60 60.0
TAR628G0279 Trochodendron aralioides HOM05D001222 ORTHO05D001195 2.9e-12 75.1 77 54.5
MELO3C023347.2 Cucumis melo HOM05D001222 ORTHO05D001195 3.8e-12 74.7 59 61.0
CsaV3_2G015220 Cucumis sativus L. HOM05D001222 ORTHO05D001195 3.8e-12 74.7 59 61.0
MBI05_g30633_MAGBIO Magnolia biondii HOM05D001222 ORTHO05D001195 3.8e-12 74.7 77 54.5
PGR142G0196 Punica granatum HOM05D001222 ORTHO05D001195 3.8e-12 74.7 55 65.5
MSTRG.16844 Avicennia marina HOM05D001222 ORTHO05D001195 5.0e-12 74.3 59 59.3
VMungo1309G1527 Vigna mungo HOM05D001222 ORTHO05D001195 5.0e-12 74.3 59 61.0
Peaxi162Scf00016g00134 Petunia axillaris HOM05D001222 ORTHO05D001195 6.5e-12 73.9 54 63.0
CSS0014671 Camellia sinensis var. sinensis HOM05D001222 ORTHO05D001195 8.5e-12 73.6 76 53.9
CSS0018043 Camellia sinensis var. sinensis HOM05D001222 ORTHO05D001195 8.5e-12 73.6 76 53.9
Ciclev10029611m.g Citrus clementina HOM05D001222 ORTHO05D001195 8.5e-12 73.6 54 61.1
Duzib132G0008 Durio zibethinus HOM05D001222 ORTHO05D001195 8.5e-12 73.6 60 56.7
Duzib248G1113 Durio zibethinus HOM05D001222 ORTHO05D001195 1.1e-11 73.2 59 59.3
Nitab4.5_0009169g0010 Nicotiana tabacum HOM05D001222 ORTHO05D001195 1.1e-11 73.2 54 61.1
Solyc01g110300.4 Solanum lycopersicum HOM05D001222 ORTHO05D001195 1.1e-11 73.2 54 61.1
Sopen01g052450 Solanum pennellii HOM05D001222 ORTHO05D001195 1.1e-11 73.2 54 61.1
PGSC0003DMG400003111 Solanum tuberosum HOM05D001222 ORTHO05D001195 1.1e-11 73.2 54 61.1
GSVIVG01024196001 Vitis vinifera HOM05D001222 ORTHO05D001195 1.1e-11 73.2 77 51.9
Lalb_Chr23g0265201 Lupinus albus HOM05D001222 ORTHO05D001195 1.4e-11 72.8 54 63.0
Nn6g32219 Nelumbo nucifera HOM05D001222 ORTHO05D001195 1.4e-11 72.8 59 61.0
TAR381G0895 Trochodendron aralioides HOM05D001222 ORTHO05D001195 1.4e-11 72.8 59 61.0
vmacro02061 Vaccinium macrocarpon HOM05D001222 ORTHO05D001195 1.4e-11 72.8 59 57.6
Atru.chr5.3128 Acer truncatum HOM05D001222 ORTHO05D001195 1.9e-11 72.4 54 57.4
Rhsim11G0182500 Rhododendron simsii HOM05D001222 ORTHO05D001195 1.9e-11 72.4 59 59.3
TWI79G1115 Tripterygium wilfordii HOM05D001222 ORTHO05D001195 1.9e-11 72.4 58 60.3
Actinidia11762 Actinidia chinensis HOM05D001222 ORTHO05D012018 2.5e-11 72.0 60 58.3
arahy.Tifrunner.gnm1.ann1.L2WNVF Arachis hypogaea HOM05D001222 ORTHO05D001195 2.5e-11 72.0 60 58.3
arahy.Tifrunner.gnm1.ann1.PH1L7J Arachis hypogaea HOM05D001222 ORTHO05D001195 2.5e-11 72.0 60 58.3
CAN.G170.89 Capsicum annuum HOM05D001222 ORTHO05D001195 2.5e-11 72.0 54 61.1
Glyma.06G008900 Glycine max HOM05D001222 ORTHO05D001195 2.5e-11 72.0 59 57.6
Phvul.009G004000 Phaseolus vulgaris HOM05D001222 ORTHO05D001195 2.5e-11 72.0 54 63.0
Dinv42010 Davidia involucrata HOM05D001222 ORTHO05D001195 3.2e-11 71.6 61 55.7
Sed0013023 Sechium edule HOM05D001222 ORTHO05D001195 3.2e-11 71.6 54 61.1
Cpa.g.sc150.30 Carica papaya HOM05D001222 ORTHO05D001195 4.2e-11 71.2 59 57.6
Ca_20929_v3 Cicer arietinum L. HOM05D001222 ORTHO05D001195 4.2e-11 71.2 54 63.0
TPR.G16238 Trifolium pratense HOM05D001222 ORTHO05D001195 4.2e-11 71.2 54 61.1
arahy.Tifrunner.gnm1.ann1.LTF9KA Arachis hypogaea HOM05D001222 ORTHO05D001195 5.5e-11 70.9 59 57.6
arahy.Tifrunner.gnm1.ann1.ZY7QH2 Arachis hypogaea HOM05D001222 ORTHO05D001195 5.5e-11 70.9 59 57.6
CiPaw.06G129200 Carya illinoinensis HOM05D001222 ORTHO05D001195 5.5e-11 70.9 54 57.4
Glyma.12G038100 Glycine max HOM05D001222 ORTHO05D001195 5.5e-11 70.9 54 63.0
Psat5g004760 Pisum sativum HOM05D001222 ORTHO05D001195 5.5e-11 70.9 56 58.9
Thecc.02G076800 Theobroma cacao HOM05D001222 ORTHO05D001195 5.5e-11 70.9 59 57.6
Ca_15342_v3 Cicer arietinum L. HOM05D001222 ORTHO05D001195 7.2e-11 70.5 54 59.3
Manes.04G084500 Manihot esculenta HOM05D001222 ORTHO05D001195 7.2e-11 70.5 54 61.1
SGA_v2.0_scaffold58G20472 Striga asiatica HOM05D001222 ORTHO05D001195 7.2e-11 70.5 63 52.4
TAR625G0007 Trochodendron aralioides HOM05D001222 ORTHO05D001195 7.2e-11 70.5 59 57.6
EL10Ac9g21653 Beta vulgaris HOM05D001222 ORTHO05D001195 9.4e-11 70.1 54 57.4
Glyma.11G111900 Glycine max HOM05D001222 ORTHO05D001195 9.4e-11 70.1 59 57.6
Lalb_Chr01g0002191 Lupinus albus HOM05D001222 ORTHO05D001195 1.2e-10 69.7 62 53.2
MD10G1064500 Malus domestica HOM05D001222 ORTHO05D001195 1.2e-10 69.7 54 59.3
Nn5g29200 Nelumbo nucifera HOM05D001222 ORTHO05D001195 1.2e-10 69.7 59 57.6
Hund06275 Selenicereus undatus HOM05D001222 ORTHO05D001195 1.2e-10 69.7 59 50.8
Dinv31809 Davidia involucrata HOM05D001222 ORTHO05D001195 1.6e-10 69.3 59 55.9
Ah.01g006120 Amaranthus hybridus HOM05D001222 ORTHO05D001195 2.1e-10 68.9 59 54.2
AUR62010405 Chenopodium quinoa HOM05D001222 ORTHO05D001195 2.7e-10 68.6 59 50.8
AUR62016812 Chenopodium quinoa HOM05D001222 ORTHO05D001195 2.7e-10 68.6 59 50.8
Hma1.2p1_0773F.1_g216140 Hydrangea macrophylla HOM05D001222 ORTHO05D001195 2.7e-10 68.6 59 55.9
MD05G1056500 Malus domestica HOM05D001222 ORTHO05D001195 2.7e-10 68.6 54 59.3
Phvul.011G040000 Phaseolus vulgaris HOM05D001222 ORTHO05D001195 2.7e-10 68.6 59 55.9
Sed0022270 Sechium edule HOM05D001222 ORTHO05D001195 2.7e-10 68.6 54 57.4
VMungo1127G0434 Vigna mungo HOM05D001222 ORTHO05D001195 2.7e-10 68.6 59 55.9
CANSAT11G0920 Cannabis sativa HOM05D001222 ORTHO05D001195 3.6e-10 68.2 54 57.4
Sc14g0001930 Simmondsia chinensis HOM05D001222 ORTHO05D001195 3.6e-10 68.2 54 57.4
Oeu036638.3 Olea europaea HOM05D001222 ORTHO05D001195 4.6e-10 67.8 59 52.5
Prupe.8G086700 Prunus persica HOM05D001222 ORTHO05D001195 4.6e-10 67.8 77 49.4
TPR.G32199 Trifolium pratense HOM05D001222 ORTHO05D001195 4.6e-10 67.8 59 54.2
MSTRG.20052 Avicennia marina HOM05D001222 ORTHO05D001195 6.1e-10 67.4 54 59.3
Cc10_g02130 Coffea canephora HOM05D001222 ORTHO05D001195 6.1e-10 67.4 59 54.2
Manes.11G092300 Manihot esculenta HOM05D001222 ORTHO05D001195 6.1e-10 67.4 54 59.3
Medtr3g117350 Medicago truncatula HOM05D001222 ORTHO05D001195 6.1e-10 67.4 59 54.2
Potri.009G123200 Populus trichocarpa HOM05D001222 ORTHO05D001195 6.1e-10 67.4 59 52.5
Hma1.2p1_0066F.1_g035850 Hydrangea macrophylla HOM05D001222 ORTHO05D001195 7.9e-10 67.0 60 58.3
Migut.B00184 Erythranthe guttata HOM05D001222 ORTHO05D001195 1.0e-09 66.6 64 53.1
Gohir.A01G003585 Gossypium hirsutum HOM05D001222 ORTHO05D001195 1.0e-09 66.6 54 57.4
Gorai.002G004300 Gossypium raimondii HOM05D001222 ORTHO05D001195 1.0e-09 66.6 54 57.4
Lj1g0027647 Lotus japonicus HOM05D001222 ORTHO05D001195 1.0e-09 66.6 59 52.5
Lj3g0023167 Lotus japonicus HOM05D001222 ORTHO05D001195 1.4e-09 66.2 59 54.2
Rhsim06G0026800 Rhododendron simsii HOM05D001222 ORTHO05D001195 1.4e-09 66.2 76 48.7
SalBow6G2910 Salvia bowleyana HOM05D001222 ORTHO05D001195 1.4e-09 66.2 59 52.5
TWI31G1138 Tripterygium wilfordii HOM05D001222 ORTHO05D001195 1.4e-09 66.2 78 47.4
Aqoxy6G02396 Aquilegia oxysepala HOM05D001222 ORTHO05D001195 1.8e-09 65.9 77 49.4
Aa31LG2G15840 Aethionema arabicum HOM05D001222 ORTHO05D001195 2.3e-09 65.5 61 49.2
CARHR247730 Cardamine hirsuta HOM05D001222 ORTHO05D001195 2.3e-09 65.5 68 48.5
CiPaw.05G072900 Carya illinoinensis HOM05D001222 ORTHO05D001195 2.3e-09 65.5 54 57.4
Cc00_g22320 Coffea canephora HOM05D001222 ORTHO05D001195 2.3e-09 65.5 59 52.5
Gohir.A03G198500 Gossypium hirsutum HOM05D001222 ORTHO05D001195 2.3e-09 65.5 53 58.5
Gohir.D01G003400 Gossypium hirsutum HOM05D001222 ORTHO05D001195 2.3e-09 65.5 54 57.4
Gohir.D02G219900 Gossypium hirsutum HOM05D001222 ORTHO05D001195 2.3e-09 65.5 53 58.5
SalBow3G3913 Salvia bowleyana HOM05D001222 ORTHO05D001195 2.3e-09 65.5 59 52.5
CSS0034340 Camellia sinensis var. sinensis HOM05D001222 ORTHO05D001195 3.0e-09 65.1 62 51.6
Lalb_Chr19g0138921 Lupinus albus HOM05D001222 ORTHO05D001195 3.0e-09 65.1 59 52.5
Hund00222 Selenicereus undatus HOM05D001222 ORTHO05D001195 3.0e-09 65.1 54 53.7
FvH4_2g10160 Fragaria vesca HOM05D001222 ORTHO05D001195 3.9e-09 64.7 59 50.8
FAN24G0864 Fragaria x ananassa HOM05D001222 ORTHO05D001195 3.9e-09 64.7 59 50.8
Medtr4g071540 Medicago truncatula HOM05D001222 ORTHO05D001195 3.9e-09 64.7 60 55.0
PSO170G3802 Papaver somniferum HOM05D001222 ORTHO05D001195 3.9e-09 64.7 76 48.7
PSO210G1532 Papaver somniferum HOM05D001222 ORTHO05D001195 3.9e-09 64.7 76 48.7
Sabra04G0108200 Salix brachista HOM05D001222 ORTHO05D001195 3.9e-09 64.7 54 53.7
THA.LOC104807765 Tarenaya hassleriana HOM05D001222 ORTHO05D001195 3.9e-09 64.7 54 55.6
ATR0661G565 Amborella trichopoda HOM05D001222 ORTHO05D001195 5.1e-09 64.3 58 55.2
Psat7g182160 Pisum sativum HOM05D001222 ORTHO05D001195 5.1e-09 64.3 54 55.6
RcHm_v2.0_Chr6g0267341 Rosa chinensis HOM05D001222 ORTHO05D001195 5.1e-09 64.3 59 50.8
THA.LOC104807295 Tarenaya hassleriana HOM05D001222 ORTHO05D001195 5.1e-09 64.3 55 58.2
CSS0029374 Camellia sinensis var. sinensis HOM05D001222 ORTHO05D001195 6.7e-09 63.9 59 52.5
Oeu055625.1 Olea europaea HOM05D001222 ORTHO05D001195 6.7e-09 63.9 54 53.7
Sabra09G0094900 Salix brachista HOM05D001222 ORTHO05D001195 6.7e-09 63.9 54 51.9
SGA_v2.0_scaffold32G13209 Striga asiatica HOM05D001222 ORTHO05D001195 6.7e-09 63.9 50 60.0
GSVIVG01009822001 Vitis vinifera HOM05D001222 ORTHO05D001195 6.7e-09 63.9 54 55.6
AL7G10950 Arabidopsis lyrata HOM05D001222 ORTHO05D001195 8.8e-09 63.5 55 56.4
FAN20G0974 Fragaria x ananassa HOM05D001222 ORTHO05D001195 8.8e-09 63.5 59 49.2
Lsat_1_v5_gn_8_128681 Lactuca sativa HOM05D001222 ORTHO05D001195 8.8e-09 63.5 54 53.7
vmacro21698 Vaccinium macrocarpon HOM05D001222 ORTHO05D001195 8.8e-09 63.5 74 48.6
Actinidia22496 Actinidia chinensis HOM05D001222 ORTHO05D001195 1.1e-08 63.2 61 49.2
ECA233G0982 Erigeron canadensis HOM05D001222 ORTHO05D001195 1.1e-08 63.2 54 53.7
FAN15G2190 Fragaria x ananassa HOM05D001222 ORTHO05D001195 1.1e-08 63.2 77 44.2
Gorai.005G247800 Gossypium raimondii HOM05D001222 ORTHO05D001195 1.1e-08 63.2 53 56.6
Sp7g36810 Schrenkiella parvula HOM05D001222 ORTHO05D001195 1.1e-08 63.2 55 56.4
BcaC01g00274 Brassica carinata HOM05D001222 ORTHO05D001195 1.5e-08 62.8 67 47.8
Thhalv10025594m.g Eutrema salsugineum HOM05D001222 ORTHO05D001195 1.5e-08 62.8 54 53.7
PSO541G3115 Papaver somniferum HOM05D001222 ORTHO05D001195 1.5e-08 62.8 59 55.9
Actinidia15386 Actinidia chinensis HOM05D001222 ORTHO05D001195 1.9e-08 62.4 54 53.7
C03p77540 Brassica napus HOM05D001222 ORTHO05D001195 1.9e-08 62.4 55 52.7
BraA08t34341Z Brassica rapa HOM05D001222 ORTHO05D001195 1.9e-08 62.4 55 52.7
Lj4A29T65 Lonicera japonica HOM05D001222 ORTHO05D001195 1.9e-08 62.4 77 48.1
Potri.004G161300 Populus trichocarpa HOM05D001222 ORTHO05D001195 2.5e-08 62.0 60 51.7
Sp7g32450 Schrenkiella parvula HOM05D001222 ORTHO05D001195 2.5e-08 62.0 54 53.7
BcaNung00678 Brassica carinata HOM05D001222 ORTHO05D001195 3.3e-08 61.6 54 51.9
A01p03840 Brassica napus HOM05D001222 ORTHO05D001195 3.3e-08 61.6 54 51.9
C01p04150 Brassica napus HOM05D001222 ORTHO05D001195 3.3e-08 61.6 54 51.9
BolC1t00403H Brassica oleracea HOM05D001222 ORTHO05D001195 3.3e-08 61.6 54 51.9
BolC3t20009H Brassica oleracea HOM05D001222 ORTHO05D001195 3.3e-08 61.6 55 52.7
BraA01t00370Z Brassica rapa HOM05D001222 ORTHO05D001195 3.3e-08 61.6 54 51.9
Aqoxy5G01501 Aquilegia oxysepala HOM05D001222 ORTHO05D001195 4.3e-08 61.2 77 45.5
CDE07G1218 Ceratophyllum demersum HOM05D001222 ORTHO05D001195 4.3e-08 61.2 76 43.4
Dinv39483 Davidia involucrata HOM05D001222 ORTHO05D001195 4.3e-08 61.2 54 57.4
ECA247G0146 Erigeron canadensis HOM05D001222 ORTHO05D001195 4.3e-08 61.2 59 45.8
CDE08G1542 Ceratophyllum demersum HOM05D001222 ORTHO05D001195 5.7e-08 60.8 56 50.0
FAN27G0366 Fragaria x ananassa HOM05D001222 ORTHO05D001195 5.7e-08 60.8 59 47.5
BcaC01g00887 Brassica carinata HOM05D001222 ORTHO05D001195 7.4e-08 60.5 62 50.0
C03p85610 Brassica napus HOM05D001222 ORTHO05D001195 7.4e-08 60.5 62 50.0
BolC3t20849H Brassica oleracea HOM05D001222 ORTHO05D001195 7.4e-08 60.5 62 50.0
CARHR242970 Cardamine hirsuta HOM05D001222 ORTHO05D001195 7.4e-08 60.5 61 47.5
Lj9A382T64 Lonicera japonica HOM05D001222 ORTHO05D001195 7.4e-08 60.5 61 50.8
AL7G16540 Arabidopsis lyrata HOM05D001222 ORTHO05D001195 9.7e-08 60.1 59 49.2
AT4G34660 Arabidopsis thaliana HOM05D001222 ORTHO05D001195 9.7e-08 60.1 59 49.2
Carub.0007s0089 Capsella rubella HOM05D001222 ORTHO05D001195 9.7e-08 60.1 55 52.7
Nitab4.5_0004368g0030 Nicotiana tabacum HOM05D001222 ORTHO05D001195 9.7e-08 60.1 76 44.7
PSO675G6952 Papaver somniferum HOM05D001222 ORTHO05D001195 9.7e-08 60.1 59 54.2
SalBow8G1190 Salvia bowleyana HOM05D001222 ORTHO05D001195 9.7e-08 60.1 55 47.3
BcaB03g11821 Brassica carinata HOM05D001222 ORTHO05D001195 2.2e-07 58.9 55 52.7
Thhalv10025489m.g Eutrema salsugineum HOM05D001222 ORTHO05D001195 2.8e-07 58.5 55 50.9
Peaxi162Scf00640g00024 Petunia axillaris HOM05D001222 ORTHO05D001195 2.8e-07 58.5 59 47.5
unitig_0.g50 Utricularia gibba HOM05D001222 ORTHO05D001195 2.8e-07 58.5 60 46.7
A08p16690 Brassica napus HOM05D001222 ORTHO05D001195 6.3e-07 57.4 62 46.8
BraA08t33634Z Brassica rapa HOM05D001222 ORTHO05D001195 6.3e-07 57.4 62 46.8
AT4G39020 Arabidopsis thaliana HOM05D001222 ORTHO05D012018 8.2e-07 57.0 51 51.0
BcaB03g12237 Brassica carinata HOM05D001222 ORTHO05D001195 8.2e-07 57.0 62 45.2
CDE09G0631 Ceratophyllum demersum HOM05D001222 ORTHO05D012018 8.2e-07 57.0 76 42.1
Eucgr.F01618 Eucalyptus grandis HOM05D001222 ORTHO05D001195 8.2e-07 57.0 59 45.8
DCAR_013848 Daucus carota HOM05D001222 ORTHO05D001195 1.1e-06 56.6 57 49.1
Lsat_1_v5_gn_1_16380 Lactuca sativa HOM05D001222 ORTHO05D001195 2.4e-06 55.5 62 46.8
SHI05596 Sapria himalayana HOM05D001222 ORTHO05D001195 3.1e-06 55.1 64 40.6
Nitab4.5_0000352g0050 Nicotiana tabacum HOM05D001222 ORTHO05D001195 4.1e-06 54.7 68 44.1
HanXRQChr15g0496431 Helianthus annuus HOM05D001222 ORTHO05D001195 5.3e-06 54.3 54 48.1
HPP92_025876 Vanilla planifolia HOM05D001222 ORTHO05D001195 6.9e-06 53.9 81 42.0
PGSC0003DMG400013729 Solanum tuberosum HOM05D001222 ORTHO05D001195 9.1e-06 53.5 77 39.0


User provided reference genes

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