Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I01321 Eucalyptus grandis HOM05D001222 ORTHO05D045348 2.1e-52 208.8 106 100.0
Eucgr.I01322 Eucalyptus grandis HOM05D001222 ORTHO05D045348 2.1e-36 155.6 81 96.3
Cfa005094 Carpinus fangiana HOM05D001222 ORTHO05D001195 3.3e-13 78.6 54 64.8
Haze_02271 Corylus avellana HOM05D001222 ORTHO05D001195 3.3e-13 78.6 54 64.8
Haze_02277 Corylus avellana HOM05D001222 ORTHO05D001195 3.3e-13 78.6 54 64.8
QL11p045858 Quercus lobata HOM05D001222 ORTHO05D001195 7.3e-13 77.4 54 64.8
Glyma.04G009000 Glycine max HOM05D001222 ORTHO05D001195 1.2e-12 76.6 59 61.0
PGR142G0196 Punica granatum HOM05D001222 ORTHO05D001195 1.2e-12 76.6 55 67.3
Ciclev10029611m.g Citrus clementina HOM05D001222 ORTHO05D001195 2.8e-12 75.5 54 63.0
COL.COLO4_26031 Corchorus olitorius HOM05D001222 ORTHO05D001195 2.8e-12 75.5 54 64.8
Actinidia00566 Actinidia chinensis HOM05D001222 ORTHO05D001195 3.6e-12 75.1 60 60.0
TAR628G0279 Trochodendron aralioides HOM05D001222 ORTHO05D001195 3.6e-12 75.1 77 54.5
EL10Ac9g21653 Beta vulgaris HOM05D001222 ORTHO05D001195 4.7e-12 74.7 54 61.1
MELO3C023347.2 Cucumis melo HOM05D001222 ORTHO05D001195 4.7e-12 74.7 59 61.0
CsaV3_2G015220 Cucumis sativus L. HOM05D001222 ORTHO05D001195 4.7e-12 74.7 59 61.0
MBI05_g30633_MAGBIO Magnolia biondii HOM05D001222 ORTHO05D001195 4.7e-12 74.7 77 54.5
TWI79G1115 Tripterygium wilfordii HOM05D001222 ORTHO05D001195 4.7e-12 74.7 58 62.1
MSTRG.16844 Avicennia marina HOM05D001222 ORTHO05D001195 6.2e-12 74.3 59 59.3
VMungo1309G1527 Vigna mungo HOM05D001222 ORTHO05D001195 6.2e-12 74.3 59 61.0
Peaxi162Scf00016g00134 Petunia axillaris HOM05D001222 ORTHO05D001195 8.1e-12 73.9 54 63.0
CSS0014671 Camellia sinensis var. sinensis HOM05D001222 ORTHO05D001195 1.1e-11 73.6 76 53.9
CSS0018043 Camellia sinensis var. sinensis HOM05D001222 ORTHO05D001195 1.1e-11 73.6 76 53.9
Duzib132G0008 Durio zibethinus HOM05D001222 ORTHO05D001195 1.1e-11 73.6 60 56.7
Rhsim11G0182500 Rhododendron simsii HOM05D001222 ORTHO05D001195 1.1e-11 73.6 59 61.0
Atru.chr5.3128 Acer truncatum HOM05D001222 ORTHO05D001195 1.4e-11 73.2 54 57.4
AUR62010405 Chenopodium quinoa HOM05D001222 ORTHO05D001195 1.4e-11 73.2 59 54.2
AUR62016812 Chenopodium quinoa HOM05D001222 ORTHO05D001195 1.4e-11 73.2 59 54.2
Duzib248G1113 Durio zibethinus HOM05D001222 ORTHO05D001195 1.4e-11 73.2 59 59.3
Nitab4.5_0009169g0010 Nicotiana tabacum HOM05D001222 ORTHO05D001195 1.4e-11 73.2 54 61.1
Solyc01g110300.4 Solanum lycopersicum HOM05D001222 ORTHO05D001195 1.4e-11 73.2 54 61.1
Sopen01g052450 Solanum pennellii HOM05D001222 ORTHO05D001195 1.4e-11 73.2 54 61.1
PGSC0003DMG400003111 Solanum tuberosum HOM05D001222 ORTHO05D001195 1.4e-11 73.2 54 61.1
GSVIVG01024196001 Vitis vinifera HOM05D001222 ORTHO05D001195 1.4e-11 73.2 77 51.9
CiPaw.06G129200 Carya illinoinensis HOM05D001222 ORTHO05D001195 1.8e-11 72.8 54 59.3
Lalb_Chr23g0265201 Lupinus albus HOM05D001222 ORTHO05D001195 1.8e-11 72.8 54 63.0
Nn6g32219 Nelumbo nucifera HOM05D001222 ORTHO05D001195 1.8e-11 72.8 59 61.0
Sc14g0001930 Simmondsia chinensis HOM05D001222 ORTHO05D001195 1.8e-11 72.8 54 61.1
TAR381G0895 Trochodendron aralioides HOM05D001222 ORTHO05D001195 1.8e-11 72.8 59 61.0
TPR.G16238 Trifolium pratense HOM05D001222 ORTHO05D001195 2.3e-11 72.4 54 63.0
vmacro02061 Vaccinium macrocarpon HOM05D001222 ORTHO05D001195 2.3e-11 72.4 59 57.6
Actinidia11762 Actinidia chinensis HOM05D001222 ORTHO05D012018 3.1e-11 72.0 60 58.3
arahy.Tifrunner.gnm1.ann1.L2WNVF Arachis hypogaea HOM05D001222 ORTHO05D001195 3.1e-11 72.0 60 58.3
arahy.Tifrunner.gnm1.ann1.PH1L7J Arachis hypogaea HOM05D001222 ORTHO05D001195 3.1e-11 72.0 60 58.3
CAN.G170.89 Capsicum annuum HOM05D001222 ORTHO05D001195 3.1e-11 72.0 54 61.1
Glyma.06G008900 Glycine max HOM05D001222 ORTHO05D001195 3.1e-11 72.0 59 57.6
Phvul.009G004000 Phaseolus vulgaris HOM05D001222 ORTHO05D001195 3.1e-11 72.0 54 63.0
Dinv42010 Davidia involucrata HOM05D001222 ORTHO05D001195 4.0e-11 71.6 61 55.7
Nn5g29200 Nelumbo nucifera HOM05D001222 ORTHO05D001195 4.0e-11 71.6 59 59.3
SGA_v2.0_scaffold58G20472 Striga asiatica HOM05D001222 ORTHO05D001195 4.0e-11 71.6 63 54.0
Cpa.g.sc150.30 Carica papaya HOM05D001222 ORTHO05D001195 5.2e-11 71.2 59 57.6
Ca_20929_v3 Cicer arietinum L. HOM05D001222 ORTHO05D001195 5.2e-11 71.2 54 63.0
arahy.Tifrunner.gnm1.ann1.LTF9KA Arachis hypogaea HOM05D001222 ORTHO05D001195 6.8e-11 70.9 59 57.6
arahy.Tifrunner.gnm1.ann1.ZY7QH2 Arachis hypogaea HOM05D001222 ORTHO05D001195 6.8e-11 70.9 59 57.6
Glyma.12G038100 Glycine max HOM05D001222 ORTHO05D001195 6.8e-11 70.9 54 63.0
Psat5g004760 Pisum sativum HOM05D001222 ORTHO05D001195 6.8e-11 70.9 56 58.9
Thecc.02G076800 Theobroma cacao HOM05D001222 ORTHO05D001195 6.8e-11 70.9 59 57.6
Ca_15342_v3 Cicer arietinum L. HOM05D001222 ORTHO05D001195 8.9e-11 70.5 54 59.3
Manes.04G084500 Manihot esculenta HOM05D001222 ORTHO05D001195 8.9e-11 70.5 54 61.1
Sed0013023 Sechium edule HOM05D001222 ORTHO05D001195 8.9e-11 70.5 54 59.3
TAR625G0007 Trochodendron aralioides HOM05D001222 ORTHO05D001195 8.9e-11 70.5 59 57.6
Glyma.11G111900 Glycine max HOM05D001222 ORTHO05D001195 1.2e-10 70.1 59 57.6
Hma1.2p1_0773F.1_g216140 Hydrangea macrophylla HOM05D001222 ORTHO05D001195 1.5e-10 69.7 59 57.6
MD10G1064500 Malus domestica HOM05D001222 ORTHO05D001195 1.5e-10 69.7 54 59.3
Hund06275 Selenicereus undatus HOM05D001222 ORTHO05D001195 1.5e-10 69.7 59 50.8
CANSAT11G0920 Cannabis sativa HOM05D001222 ORTHO05D001195 2.0e-10 69.3 54 59.3
Cc10_g02130 Coffea canephora HOM05D001222 ORTHO05D001195 2.0e-10 69.3 59 55.9
Dinv31809 Davidia involucrata HOM05D001222 ORTHO05D001195 2.0e-10 69.3 59 55.9
Lalb_Chr01g0002191 Lupinus albus HOM05D001222 ORTHO05D001195 2.0e-10 69.3 62 53.2
Ah.01g006120 Amaranthus hybridus HOM05D001222 ORTHO05D001195 2.6e-10 68.9 59 54.2
MD05G1056500 Malus domestica HOM05D001222 ORTHO05D001195 3.4e-10 68.6 54 59.3
Phvul.011G040000 Phaseolus vulgaris HOM05D001222 ORTHO05D001195 3.4e-10 68.6 59 55.9
Sed0022270 Sechium edule HOM05D001222 ORTHO05D001195 3.4e-10 68.6 54 57.4
VMungo1127G0434 Vigna mungo HOM05D001222 ORTHO05D001195 3.4e-10 68.6 59 55.9
TWI31G1138 Tripterygium wilfordii HOM05D001222 ORTHO05D001195 4.4e-10 68.2 78 48.7
Oeu036638.3 Olea europaea HOM05D001222 ORTHO05D001195 5.8e-10 67.8 59 52.5
Prupe.8G086700 Prunus persica HOM05D001222 ORTHO05D001195 5.8e-10 67.8 77 49.4
Rhsim06G0026800 Rhododendron simsii HOM05D001222 ORTHO05D001195 5.8e-10 67.8 76 50.0
TPR.G32199 Trifolium pratense HOM05D001222 ORTHO05D001195 5.8e-10 67.8 59 54.2
MSTRG.20052 Avicennia marina HOM05D001222 ORTHO05D001195 7.6e-10 67.4 54 59.3
CiPaw.05G072900 Carya illinoinensis HOM05D001222 ORTHO05D001195 7.6e-10 67.4 54 59.3
Manes.11G092300 Manihot esculenta HOM05D001222 ORTHO05D001195 7.6e-10 67.4 54 59.3
Medtr3g117350 Medicago truncatula HOM05D001222 ORTHO05D001195 7.6e-10 67.4 59 54.2
Potri.009G123200 Populus trichocarpa HOM05D001222 ORTHO05D001195 7.6e-10 67.4 59 52.5
SalBow3G3913 Salvia bowleyana HOM05D001222 ORTHO05D001195 7.6e-10 67.4 59 54.2
Migut.B00184 Erythranthe guttata HOM05D001222 ORTHO05D001195 9.9e-10 67.0 64 53.1
Hma1.2p1_0066F.1_g035850 Hydrangea macrophylla HOM05D001222 ORTHO05D001195 9.9e-10 67.0 60 58.3
Hund00222 Selenicereus undatus HOM05D001222 ORTHO05D001195 9.9e-10 67.0 54 55.6
Aa31LG2G15840 Aethionema arabicum HOM05D001222 ORTHO05D001195 1.3e-09 66.6 61 50.8
Gohir.A01G003585 Gossypium hirsutum HOM05D001222 ORTHO05D001195 1.3e-09 66.6 54 57.4
Gorai.002G004300 Gossypium raimondii HOM05D001222 ORTHO05D001195 1.3e-09 66.6 54 57.4
Lj1g0027647 Lotus japonicus HOM05D001222 ORTHO05D001195 1.3e-09 66.6 59 52.5
CSS0034340 Camellia sinensis var. sinensis HOM05D001222 ORTHO05D001195 1.7e-09 66.2 62 53.2
Lj3g0023167 Lotus japonicus HOM05D001222 ORTHO05D001195 1.7e-09 66.2 59 54.2
SalBow6G2910 Salvia bowleyana HOM05D001222 ORTHO05D001195 1.7e-09 66.2 59 52.5
Aqoxy6G02396 Aquilegia oxysepala HOM05D001222 ORTHO05D001195 2.2e-09 65.9 77 49.4
CSS0029374 Camellia sinensis var. sinensis HOM05D001222 ORTHO05D001195 2.9e-09 65.5 59 54.2
Cc00_g22320 Coffea canephora HOM05D001222 ORTHO05D001195 2.9e-09 65.5 59 52.5
Gohir.A03G198500 Gossypium hirsutum HOM05D001222 ORTHO05D001195 2.9e-09 65.5 53 58.5
Gohir.D01G003400 Gossypium hirsutum HOM05D001222 ORTHO05D001195 2.9e-09 65.5 54 57.4
Gohir.D02G219900 Gossypium hirsutum HOM05D001222 ORTHO05D001195 2.9e-09 65.5 53 58.5
Lalb_Chr19g0138921 Lupinus albus HOM05D001222 ORTHO05D001195 3.8e-09 65.1 59 52.5
SGA_v2.0_scaffold32G13209 Striga asiatica HOM05D001222 ORTHO05D001195 3.8e-09 65.1 50 62.0
vmacro21698 Vaccinium macrocarpon HOM05D001222 ORTHO05D001195 3.8e-09 65.1 74 50.0
Actinidia22496 Actinidia chinensis HOM05D001222 ORTHO05D001195 4.9e-09 64.7 61 50.8
FvH4_2g10160 Fragaria vesca HOM05D001222 ORTHO05D001195 4.9e-09 64.7 59 50.8
FAN24G0864 Fragaria x ananassa HOM05D001222 ORTHO05D001195 4.9e-09 64.7 59 50.8
Medtr4g071540 Medicago truncatula HOM05D001222 ORTHO05D001195 4.9e-09 64.7 60 55.0
Sabra04G0108200 Salix brachista HOM05D001222 ORTHO05D001195 4.9e-09 64.7 54 53.7
ATR0661G565 Amborella trichopoda HOM05D001222 ORTHO05D001195 6.4e-09 64.3 58 55.2
Lj4A29T65 Lonicera japonica HOM05D001222 ORTHO05D001195 6.4e-09 64.3 77 49.4
Psat7g182160 Pisum sativum HOM05D001222 ORTHO05D001195 6.4e-09 64.3 54 55.6
RcHm_v2.0_Chr6g0267341 Rosa chinensis HOM05D001222 ORTHO05D001195 6.4e-09 64.3 59 50.8
Actinidia15386 Actinidia chinensis HOM05D001222 ORTHO05D001195 8.4e-09 63.9 54 55.6
Thhalv10025594m.g Eutrema salsugineum HOM05D001222 ORTHO05D001195 8.4e-09 63.9 54 55.6
PSO170G3802 Papaver somniferum HOM05D001222 ORTHO05D001195 8.4e-09 63.9 76 48.7
PSO210G1532 Papaver somniferum HOM05D001222 ORTHO05D001195 8.4e-09 63.9 76 48.7
Sabra09G0094900 Salix brachista HOM05D001222 ORTHO05D001195 8.4e-09 63.9 54 51.9
GSVIVG01009822001 Vitis vinifera HOM05D001222 ORTHO05D001195 8.4e-09 63.9 54 55.6
AL7G10950 Arabidopsis lyrata HOM05D001222 ORTHO05D001195 1.1e-08 63.5 55 56.4
FAN20G0974 Fragaria x ananassa HOM05D001222 ORTHO05D001195 1.1e-08 63.5 59 49.2
Lsat_1_v5_gn_8_128681 Lactuca sativa HOM05D001222 ORTHO05D001195 1.1e-08 63.5 54 53.7
THA.LOC104807765 Tarenaya hassleriana HOM05D001222 ORTHO05D001195 1.1e-08 63.5 54 55.6
ECA233G0982 Erigeron canadensis HOM05D001222 ORTHO05D001195 1.4e-08 63.2 54 53.7
FAN15G2190 Fragaria x ananassa HOM05D001222 ORTHO05D001195 1.4e-08 63.2 77 44.2
Gorai.005G247800 Gossypium raimondii HOM05D001222 ORTHO05D001195 1.4e-08 63.2 53 56.6
Sp7g32450 Schrenkiella parvula HOM05D001222 ORTHO05D001195 1.4e-08 63.2 54 55.6
THA.LOC104807295 Tarenaya hassleriana HOM05D001222 ORTHO05D001195 1.4e-08 63.2 55 58.2
BcaC01g00274 Brassica carinata HOM05D001222 ORTHO05D001195 1.9e-08 62.8 67 47.8
BcaNung00678 Brassica carinata HOM05D001222 ORTHO05D001195 1.9e-08 62.8 54 53.7
A01p03840 Brassica napus HOM05D001222 ORTHO05D001195 1.9e-08 62.8 54 53.7
C01p04150 Brassica napus HOM05D001222 ORTHO05D001195 1.9e-08 62.8 54 53.7
BolC1t00403H Brassica oleracea HOM05D001222 ORTHO05D001195 1.9e-08 62.8 54 53.7
BraA01t00370Z Brassica rapa HOM05D001222 ORTHO05D001195 1.9e-08 62.8 54 53.7
CARHR247730 Cardamine hirsuta HOM05D001222 ORTHO05D001195 1.9e-08 62.8 68 47.1
CDE07G1218 Ceratophyllum demersum HOM05D001222 ORTHO05D001195 1.9e-08 62.8 76 44.7
CDE08G1542 Ceratophyllum demersum HOM05D001222 ORTHO05D001195 1.9e-08 62.8 56 51.8
ECA247G0146 Erigeron canadensis HOM05D001222 ORTHO05D001195 1.9e-08 62.8 59 47.5
PSO541G3115 Papaver somniferum HOM05D001222 ORTHO05D001195 1.9e-08 62.8 59 55.9
C03p77540 Brassica napus HOM05D001222 ORTHO05D001195 2.4e-08 62.4 55 52.7
Potri.004G161300 Populus trichocarpa HOM05D001222 ORTHO05D001195 3.2e-08 62.0 60 51.7
Aqoxy5G01501 Aquilegia oxysepala HOM05D001222 ORTHO05D001195 5.4e-08 61.2 77 45.5
AL7G16540 Arabidopsis lyrata HOM05D001222 ORTHO05D001195 5.4e-08 61.2 59 50.8
AT4G34660 Arabidopsis thaliana HOM05D001222 ORTHO05D001195 5.4e-08 61.2 59 50.8
BraA08t34341Z Brassica rapa HOM05D001222 ORTHO05D001195 5.4e-08 61.2 55 50.9
Dinv39483 Davidia involucrata HOM05D001222 ORTHO05D001195 5.4e-08 61.2 54 57.4
Oeu055625.1 Olea europaea HOM05D001222 ORTHO05D001195 5.4e-08 61.2 54 51.9
FAN27G0366 Fragaria x ananassa HOM05D001222 ORTHO05D001195 7.1e-08 60.8 59 47.5
BolC3t20009H Brassica oleracea HOM05D001222 ORTHO05D001195 9.2e-08 60.5 55 50.9
CARHR242970 Cardamine hirsuta HOM05D001222 ORTHO05D001195 9.2e-08 60.5 61 47.5
Nitab4.5_0004368g0030 Nicotiana tabacum HOM05D001222 ORTHO05D001195 9.2e-08 60.5 76 44.7
Sp7g36810 Schrenkiella parvula HOM05D001222 ORTHO05D001195 9.2e-08 60.5 55 54.5
PSO675G6952 Papaver somniferum HOM05D001222 ORTHO05D001195 1.2e-07 60.1 59 54.2
Peaxi162Scf00640g00024 Petunia axillaris HOM05D001222 ORTHO05D001195 1.2e-07 60.1 59 49.2
SalBow8G1190 Salvia bowleyana HOM05D001222 ORTHO05D001195 1.6e-07 59.7 55 47.3
BcaC01g00887 Brassica carinata HOM05D001222 ORTHO05D001195 2.1e-07 59.3 62 50.0
C03p85610 Brassica napus HOM05D001222 ORTHO05D001195 2.1e-07 59.3 62 50.0
BolC3t20849H Brassica oleracea HOM05D001222 ORTHO05D001195 2.1e-07 59.3 62 50.0
Carub.0007s0089 Capsella rubella HOM05D001222 ORTHO05D001195 2.7e-07 58.9 55 50.9
Eucgr.F01618 Eucalyptus grandis HOM05D001222 ORTHO05D001195 2.7e-07 58.9 59 47.5
CDE09G0631 Ceratophyllum demersum HOM05D001222 ORTHO05D012018 3.5e-07 58.5 76 43.4
DCAR_013848 Daucus carota HOM05D001222 ORTHO05D001195 3.5e-07 58.5 57 50.9
Thhalv10025489m.g Eutrema salsugineum HOM05D001222 ORTHO05D001195 3.5e-07 58.5 55 50.9
unitig_0.g50 Utricularia gibba HOM05D001222 ORTHO05D001195 3.5e-07 58.5 60 46.7
HPP92_025876 Vanilla planifolia HOM05D001222 ORTHO05D001195 3.5e-07 58.5 81 44.4
AT4G39020 Arabidopsis thaliana HOM05D001222 ORTHO05D012018 1.0e-06 57.0 51 51.0
Lsat_1_v5_gn_1_16380 Lactuca sativa HOM05D001222 ORTHO05D001195 1.0e-06 57.0 62 48.4
A08p16690 Brassica napus HOM05D001222 ORTHO05D001195 1.7e-06 56.2 62 46.8
BraA08t33634Z Brassica rapa HOM05D001222 ORTHO05D001195 1.7e-06 56.2 62 46.8
SHI05596 Sapria himalayana HOM05D001222 ORTHO05D001195 1.7e-06 56.2 64 42.2
BcaB03g12237 Brassica carinata HOM05D001222 ORTHO05D001195 2.3e-06 55.8 62 43.5
PGSC0003DMG400013729 Solanum tuberosum HOM05D001222 ORTHO05D001195 3.0e-06 55.5 77 40.3
Lj9A382T64 Lonicera japonica HOM05D001222 ORTHO05D001195 3.9e-06 55.1 61 47.5
BcaB03g11821 Brassica carinata HOM05D001222 ORTHO05D001195 5.1e-06 54.7 55 50.9
BcaNung04911 Brassica carinata HOM05D001222 ORTHO05D001195 6.6e-06 54.3 66 43.9
BcaNung05383 Brassica carinata HOM05D001222 ORTHO05D001195 6.6e-06 54.3 66 43.9
HanXRQChr02g0041781 Helianthus annuus HOM05D001222 ORTHO05D001195 6.6e-06 54.3 54 46.3
HanXRQChr15g0496431 Helianthus annuus HOM05D001222 ORTHO05D001195 6.6e-06 54.3 54 48.1
Solyc07g032110.3 Solanum lycopersicum HOM05D001222 ORTHO05D001195 6.6e-06 54.3 54 44.4
Sopen07g015520 Solanum pennellii HOM05D001222 ORTHO05D001195 6.6e-06 54.3 54 44.4
Oeu018121.1 Olea europaea HOM05D001222 ORTHO05D001195 8.6e-06 53.9 60 43.3
Zm00001eb220370 Zea mays HOM05D001222 ORTHO05D001195 8.6e-06 53.9 59 44.1


User provided reference genes

Program Settings