Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I00925 Eucalyptus grandis HOM05D000533 ORTHO05D001069 1.6e-34 148.7 67 100.0
Lj2C1238G31 Lonicera japonica HOM05D000533 ORTHO05D001069 3.4e-16 87.8 58 70.7
Lju5009C0T5 Lonicera japonica HOM05D000533 ORTHO05D001069 3.4e-16 87.8 58 70.7
QL93p0141_0008 Quercus lobata HOM05D000533 ORTHO05D001069 3.4e-16 87.8 58 70.7
ATCG01110 Arabidopsis thaliana HOM05D000533 ORTHO05D001069 5.8e-16 87.0 58 70.7
C05p53840 Brassica napus HOM05D000533 ORTHO05D001069 5.8e-16 87.0 58 70.7
C07p33470 Brassica napus HOM05D000533 ORTHO05D001069 5.8e-16 87.0 58 70.7
C09p40300 Brassica napus HOM05D000533 ORTHO05D001069 5.8e-16 87.0 58 70.7
BolC5t34051H Brassica oleracea HOM05D000533 ORTHO05D001069 5.8e-16 87.0 58 70.7
BolSC29t60510H Brassica oleracea HOM05D000533 ORTHO05D001069 5.8e-16 87.0 58 70.7
BolSC35t60688H Brassica oleracea HOM05D000533 ORTHO05D001069 5.8e-16 87.0 58 70.7
BolSC35t60708H Brassica oleracea HOM05D000533 ORTHO05D001069 5.8e-16 87.0 58 70.7
BolSC37t60797H Brassica oleracea HOM05D000533 ORTHO05D001069 5.8e-16 87.0 58 70.7
BraSC138t45531Z Brassica rapa HOM05D000533 ORTHO05D001069 5.8e-16 87.0 58 70.7
BraSC143t45656Z Brassica rapa HOM05D000533 ORTHO05D001069 5.8e-16 87.0 58 70.7
BraSC25t45914Z Brassica rapa HOM05D000533 ORTHO05D001069 5.8e-16 87.0 58 70.7
BraSC59t46554Z Brassica rapa HOM05D000533 ORTHO05D001069 5.8e-16 87.0 58 70.7
ECA074G0013 Erigeron canadensis HOM05D000533 ORTHO05D001069 7.6e-16 86.7 58 72.4
FvH4_c3g00020 Fragaria vesca HOM05D000533 ORTHO05D001069 7.6e-16 86.7 58 70.7
FAN01G2373 Fragaria x ananassa HOM05D000533 ORTHO05D001069 7.6e-16 86.7 58 70.7
Lsat_1_v5_gn_4_33860 Lactuca sativa HOM05D000533 ORTHO05D001069 7.6e-16 86.7 58 72.4
Lsat_1_v5_gn_5_124461 Lactuca sativa HOM05D000533 ORTHO05D001069 7.6e-16 86.7 58 72.4
Lsat_1_v5_gn_5_821 Lactuca sativa HOM05D000533 ORTHO05D001069 7.6e-16 86.7 58 72.4
Lsat_1_v5_gn_8_137301 Lactuca sativa HOM05D000533 ORTHO05D001069 7.6e-16 86.7 58 72.4
Lsat_1_v5_gn_9_115440 Lactuca sativa HOM05D000533 ORTHO05D001069 7.6e-16 86.7 58 72.4
LjContig00318g0022363 Lotus japonicus HOM05D000533 ORTHO05D001069 7.6e-16 86.7 58 72.4
LjContig00319g0004717 Lotus japonicus HOM05D000533 ORTHO05D001069 7.6e-16 86.7 58 72.4
Lalb_Chr07g0191821 Lupinus albus HOM05D000533 ORTHO05D001069 7.6e-16 86.7 58 72.4
Lalb_Chr15g0080701 Lupinus albus HOM05D000533 ORTHO05D001069 7.6e-16 86.7 58 72.4
Nn029s41575 Nelumbo nucifera HOM05D000533 ORTHO05D001069 7.6e-16 86.7 58 72.4
HanXRQChr00c0336g0573701 Helianthus annuus HOM05D000533 ORTHO05D001069 9.9e-16 86.3 58 72.4
HanXRQChr00c0504g0575331 Helianthus annuus HOM05D000533 ORTHO05D001069 9.9e-16 86.3 58 72.4
HanXRQChr02g0059741 Helianthus annuus HOM05D000533 ORTHO05D001069 9.9e-16 86.3 58 72.4
HanXRQChr09g0258481 Helianthus annuus HOM05D000533 ORTHO05D001069 9.9e-16 86.3 58 72.4
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 9.9e-16 86.3 58 72.4
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 9.9e-16 86.3 58 72.4
HanXRQChr17g0557731 Helianthus annuus HOM05D000533 ORTHO05D001069 9.9e-16 86.3 58 72.4
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 9.9e-16 86.3 58 72.4
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 9.9e-16 86.3 58 72.4
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 9.9e-16 86.3 58 72.4
Lsat_1_v5_gn_6_87021 Lactuca sativa HOM05D000533 ORTHO05D001069 9.9e-16 86.3 58 72.4
Sed0009234 Sechium edule HOM05D000533 ORTHO05D001069 1.3e-15 85.9 58 72.4
Sed0015694 Sechium edule HOM05D000533 ORTHO05D001069 1.3e-15 85.9 58 72.4
Sed0022513 Sechium edule HOM05D000533 ORTHO05D001069 1.3e-15 85.9 58 72.4
BolC9t56912H Brassica oleracea HOM05D000533 ORTHO05D001069 1.7e-15 85.5 58 69.0
MBI10_g47589_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 1.7e-15 85.5 58 70.7
PGR111G0062 Punica granatum HOM05D000533 ORTHO05D001069 1.7e-15 85.5 56 75.0
BolC9t56921H Brassica oleracea HOM05D000533 ORTHO05D001069 2.2e-15 85.1 58 69.0
TAR625G0265 Trochodendron aralioides HOM05D000533 ORTHO05D001069 2.2e-15 85.1 58 70.7
ClCG11G009630 Citrullus lanatus HOM05D000533 ORTHO05D001069 2.9e-15 84.7 41 92.7
MELO3C027054.2 Cucumis melo HOM05D000533 ORTHO05D001069 2.9e-15 84.7 41 92.7
Eucgr.B00847 Eucalyptus grandis HOM05D000533 ORTHO05D001069 2.9e-15 84.7 41 92.7
PSO548G0122 Papaver somniferum HOM05D000533 ORTHO05D001069 2.9e-15 84.7 56 73.2
Psat0s1160g0320 Pisum sativum HOM05D000533 ORTHO05D001069 3.8e-15 84.3 58 70.7
EL10Ac1g02290 Beta vulgaris HOM05D000533 ORTHO05D001069 4.9e-15 84.0 58 69.0
EL10Ac6g14289 Beta vulgaris HOM05D000533 ORTHO05D001069 4.9e-15 84.0 58 69.0
EL10Ac9g21011 Beta vulgaris HOM05D000533 ORTHO05D001069 4.9e-15 84.0 58 69.0
FvH4_6g41620 Fragaria vesca HOM05D000533 ORTHO05D001069 4.9e-15 84.0 41 90.2
Atru.chr2.908 Acer truncatum HOM05D000533 ORTHO05D001069 6.4e-15 83.6 41 90.2
ATR0924G001 Amborella trichopoda HOM05D000533 ORTHO05D001069 6.4e-15 83.6 58 70.7
Hma1.2p1_0660F.1_g197430 Hydrangea macrophylla HOM05D000533 ORTHO05D001069 6.4e-15 83.6 58 70.7
Lsat_1_v5_gn_4_118061 Lactuca sativa HOM05D000533 ORTHO05D001069 6.4e-15 83.6 41 90.2
Medtr2g451380 Medicago truncatula HOM05D000533 ORTHO05D001069 6.4e-15 83.6 58 70.7
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 6.4e-15 83.6 58 70.7
Medtr7g021700 Medicago truncatula HOM05D000533 ORTHO05D006151 6.4e-15 83.6 58 70.7
Psat1g050080 Pisum sativum HOM05D000533 ORTHO05D001069 6.4e-15 83.6 58 70.7
SEGI_05748 Sequoiadendron giganteum HOM05D000216 ORTHO05D001131 6.4e-15 83.6 41 90.2
SEGI_26516 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 6.4e-15 83.6 41 90.2
unitig_91.g26523 Utricularia gibba HOM05D000533 ORTHO05D001069 6.4e-15 83.6 41 90.2
BolC7t43858H Brassica oleracea HOM05D000533 ORTHO05D001069 8.4e-15 83.2 41 87.8
Gohir.1Z050466 Gossypium hirsutum HOM05D000533 ORTHO05D001069 8.4e-15 83.2 41 87.8
Gorai.009G313900 Gossypium raimondii HOM05D000533 ORTHO05D001069 8.4e-15 83.2 41 87.8
Peaxi162Scf00030g02114 Petunia axillaris HOM05D000533 ORTHO05D001069 8.4e-15 83.2 58 69.0
Peaxi162Scf00133g00521 Petunia axillaris HOM05D000533 ORTHO05D001069 8.4e-15 83.2 58 69.0
Solyc00g500087.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 8.4e-15 83.2 58 69.0
Solyc00g500124.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 8.4e-15 83.2 58 69.0
Solyc00g500192.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 8.4e-15 83.2 58 69.0
Solyc00g500280.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 8.4e-15 83.2 58 69.0
Sopen04g017430 Solanum pennellii HOM05D000533 ORTHO05D001069 8.4e-15 83.2 58 69.0
Hund28343 Selenicereus undatus HOM05D000533 ORTHO05D001069 1.1e-14 82.8 58 70.7
Hund29094 Selenicereus undatus HOM05D000533 ORTHO05D001069 1.1e-14 82.8 58 70.7
Hund30658 Selenicereus undatus HOM05D000533 ORTHO05D001069 1.1e-14 82.8 58 70.7
Hund30925 Selenicereus undatus HOM05D000533 ORTHO05D001069 1.1e-14 82.8 58 70.7
Gorai.013G076700 Gossypium raimondii HOM05D000533 ORTHO05D001069 1.9e-14 82.0 41 85.4
Nitab4.5_0006409g0080 Nicotiana tabacum HOM05D000533 ORTHO05D001069 1.9e-14 82.0 58 67.2
DCAR_032542 Daucus carota HOM05D000533 ORTHO05D001069 2.4e-14 81.6 58 69.0
Gohir.1Z049694 Gossypium hirsutum HOM05D000533 ORTHO05D001069 2.4e-14 81.6 41 85.4
Gohir.A13G086335 Gossypium hirsutum HOM05D000533 ORTHO05D001069 2.4e-14 81.6 56 69.6
Medtr6g042200 Medicago truncatula HOM05D000533 ORTHO05D001069 2.4e-14 81.6 58 69.0
Gohir.D08G207450 Gossypium hirsutum HOM05D000533 ORTHO05D001069 3.2e-14 81.3 41 85.4
Phvul.004G015300 Phaseolus vulgaris HOM05D000533 ORTHO05D001069 3.2e-14 81.3 54 74.1
Atru.chr5.1326 Acer truncatum HOM05D000533 ORTHO05D001069 4.2e-14 80.9 41 85.4
Ah.10g027020 Amaranthus hybridus HOM05D000533 ORTHO05D001069 4.2e-14 80.9 58 67.2
Ah.10g027260 Amaranthus hybridus HOM05D000533 ORTHO05D001069 4.2e-14 80.9 58 67.2
Ah.10g027700 Amaranthus hybridus HOM05D000533 ORTHO05D001069 4.2e-14 80.9 58 67.2
Psat0s6989g0240 Pisum sativum HOM05D000533 ORTHO05D001069 4.2e-14 80.9 58 69.0
DCAR_005908 Daucus carota HOM05D000533 ORTHO05D001069 5.5e-14 80.5 41 87.8
Nitab4.5_0006502g0030 Nicotiana tabacum HOM05D000533 ORTHO05D001069 5.5e-14 80.5 57 68.4
CAN.G1045.9 Capsicum annuum HOM05D000533 ORTHO05D001069 7.1e-14 80.1 41 85.4
CAN.G1470.8 Capsicum annuum HOM05D000533 ORTHO05D001069 7.1e-14 80.1 41 85.4
CAN.G965.3 Capsicum annuum HOM05D000533 ORTHO05D001069 7.1e-14 80.1 41 85.4
Psat5g037760 Pisum sativum HOM05D000533 ORTHO05D001069 2.1e-13 78.6 58 67.2
RcHm_v2.0_Chr3g0470811 Rosa chinensis HOM05D000533 ORTHO05D001069 2.1e-13 78.6 41 82.9
Glyma.18G155701 Glycine max HOM05D000533 ORTHO05D001069 2.7e-13 78.2 56 69.6
Oeu015129.1 Olea europaea HOM05D000533 ORTHO05D001069 3.5e-13 77.8 58 65.5
SEGI_26586 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 3.5e-13 77.8 41 85.4
Gohir.A04G053078 Gossypium hirsutum HOM05D000533 ORTHO05D001069 4.6e-13 77.4 41 82.9
ClCG07G012690 Citrullus lanatus HOM05D000533 ORTHO05D001069 6.0e-13 77.0 40 87.5
Medtr4g117480 Medicago truncatula HOM05D000533 ORTHO05D001069 7.9e-13 76.6 41 82.9
CAN.G378.10 Capsicum annuum HOM05D000533 ORTHO05D001069 2.3e-12 75.1 41 78.0
Psat0s1920g0160 Pisum sativum HOM05D000533 ORTHO05D001069 3.0e-12 74.7 41 78.0
Solyc08g022170.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 3.0e-12 74.7 41 78.0
Potri.013G074650 Populus trichocarpa HOM05D000533 ORTHO05D001069 3.9e-12 74.3 41 80.5
Solyc01g017740.2 Solanum lycopersicum HOM05D000580 ORTHO05D001785 6.7e-12 73.6 40 80.0
Eucgr.F01268 Eucalyptus grandis HOM05D000533 ORTHO05D001069 1.5e-11 72.4 39 84.6
Psat0s2709g0120 Pisum sativum HOM05D000533 ORTHO05D001069 5.6e-11 70.5 50 68.0
SMO086G0065 Selaginella moellendorffii HOM05D000533 ORTHO05D001069 5.6e-11 70.5 41 78.0
vmacro22393 Vaccinium macrocarpon HOM05D000533 ORTHO05D001069 7.4e-11 70.1 36 88.9
vmacro22419 Vaccinium macrocarpon HOM05D000533 ORTHO05D001069 7.4e-11 70.1 36 88.9
Psat7g199400 Pisum sativum HOM05D000533 ORTHO05D001069 2.1e-10 68.6 52 63.5
CSS0030738 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D001069 3.7e-10 67.8 50 66.0
Gorai.004G123700 Gossypium raimondii HOM05D000533 ORTHO05D001069 6.2e-10 67.0 40 77.5
HanXRQChr11g0321231 Helianthus annuus HOM05D000533 ORTHO05D001069 8.2e-10 66.6 33 87.9
AUR62043262 Chenopodium quinoa HOM05D000533 ORTHO05D001069 1.4e-09 65.9 35 80.0
CAN.G127.10 Capsicum annuum HOM05D000533 ORTHO05D001069 2.4e-09 65.1 41 65.9
Gohir.D09G085250 Gossypium hirsutum HOM05D000533 ORTHO05D001069 2.4e-09 65.1 41 68.3
arahy.Tifrunner.gnm1.ann1.EMA6B0 Arachis hypogaea HOM05D000533 ORTHO05D001069 3.1e-09 64.7 41 70.7
MBI10_g47594_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 3.4e-08 61.2 58 56.9
Gorai.006G101200 Gossypium raimondii HOM05D000533 ORTHO05D001069 4.5e-08 60.8 41 65.9
Lsat_1_v5_gn_5_66001 Lactuca sativa HOM05D000533 ORTHO05D001069 5.8e-08 60.5 50 60.0
ClCG10G006000 Citrullus lanatus HOM05D000533 ORTHO05D001069 7.6e-08 60.1 58 53.4
Sabra10G0056200 Salix brachista HOM05D000533 ORTHO05D001069 1.0e-07 59.7 45 66.7
SabraPtG0005900 Salix brachista HOM05D000533 ORTHO05D001069 1.0e-07 59.7 45 66.7
TPR.G20526 Trifolium pratense HOM05D000533 ORTHO05D001069 1.7e-07 58.9 38 65.8
AL9U11960 Arabidopsis lyrata HOM05D000533 ORTHO05D001069 2.9e-07 58.2 45 62.2
Aqoxy84s002 Aquilegia oxysepala HOM05D000533 ORTHO05D001069 8.4e-07 56.6 40 55.0
Nitab4.5_0007400g0140 Nicotiana tabacum HOM05D000533 ORTHO05D001069 1.1e-06 56.2 40 67.5
Lalb_Chr25g0284051 Lupinus albus HOM05D000533 ORTHO05D001069 1.4e-06 55.8 30 80.0
AUR62028573 Chenopodium quinoa HOM05D000533 ORTHO05D001069 1.9e-06 55.5 30 80.0
PRCOL_00000735 Prasinoderma coloniale HOM05D000533 ORTHO05D001069 3.2e-06 54.7 55 49.1
SalBow1G1175 Salvia bowleyana HOM05D000533 ORTHO05D001069 3.2e-06 54.7 28 85.7
SEGI_36880 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 3.2e-06 54.7 28 85.7
AagrBONN_evm.TU.Sc2ySwM_117.4105 Anthoceros agrestis HOM05D000533 ORTHO05D001069 4.2e-06 54.3 57 43.9
Cfa022526 Carpinus fangiana HOM05D000533 ORTHO05D001069 4.2e-06 54.3 40 55.0
Haze_26686 Corylus avellana HOM05D000533 ORTHO05D001069 4.2e-06 54.3 55 49.1
Gohir.A01G140323 Gossypium hirsutum HOM05D000533 ORTHO05D001069 4.2e-06 54.3 28 82.1
Gohir.D11G334151 Gossypium hirsutum HOM05D000533 ORTHO05D001069 4.2e-06 54.3 28 82.1
Actinidia30480 Actinidia chinensis HOM05D000533 ORTHO05D001069 9.3e-06 53.1 28 85.7
Lalb_Chr18g0049401 Lupinus albus HOM05D000533 ORTHO05D001069 9.3e-06 53.1 30 83.3


User provided reference genes

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