Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 6.3e-227 790.4 395 100.0
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 1.2e-220 769.6 387 99.2
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 3.9e-176 621.7 388 78.6
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 3.3e-151 538.9 391 69.6
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 5.6e-151 538.1 381 70.3
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 7.4e-151 537.7 381 69.6
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 2.8e-150 535.8 382 69.1
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 1.4e-149 533.5 382 67.8
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 2.4e-149 532.7 389 67.6
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 3.1e-149 532.3 389 68.4
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 2.0e-148 529.6 381 68.8
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 2.6e-148 529.3 389 68.1
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 2.6e-148 529.3 382 68.3
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 7.6e-148 527.7 381 67.5
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 2.2e-147 526.2 395 67.3
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 4.9e-147 525.0 389 67.4
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 1.4e-146 523.5 381 66.4
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 9.3e-146 520.8 382 69.1
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 1.2e-145 520.4 384 67.4
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.6e-145 520.0 384 67.7
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 1.6e-145 520.0 381 67.2
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 2.1e-145 519.6 382 66.5
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 7.9e-145 517.7 384 67.4
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 1.3e-144 516.9 381 66.4
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 1.8e-144 516.5 382 67.5
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 2.3e-144 516.2 382 67.3
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 5.1e-144 515.0 382 68.6
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 6.7e-144 514.6 419 63.7
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 1.5e-143 513.5 382 66.8
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 1.9e-143 513.1 382 66.5
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 3.3e-143 512.3 388 66.0
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 3.3e-143 512.3 384 66.9
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 4.3e-143 511.9 383 64.8
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 5.6e-143 511.5 381 65.6
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 7.4e-143 511.1 384 66.9
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 7.4e-143 511.1 381 66.7
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 2.1e-142 509.6 361 70.1
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 3.7e-142 508.8 384 66.7
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 4.8e-142 508.4 384 64.8
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 2.4e-141 506.1 381 65.6
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 4.0e-141 505.4 384 65.4
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 1.2e-140 503.8 382 65.2
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 2.0e-140 503.1 384 66.9
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 2.0e-140 503.1 384 66.9
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 2.6e-140 502.7 394 64.7
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 3.4e-140 502.3 392 65.6
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 5.8e-140 501.5 381 65.1
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 1.0e-139 500.7 384 66.7
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 4.9e-139 498.4 409 62.6
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 2.5e-138 496.1 389 64.0
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 2.5e-138 496.1 384 64.8
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 9.3e-138 494.2 384 64.3
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 6.0e-137 491.5 381 63.3
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 1.0e-136 490.7 381 64.6
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 1.0e-136 490.7 381 64.6
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 1.8e-136 490.0 394 62.4
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 3.0e-136 489.2 380 63.4
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 1.1e-135 487.3 389 62.2
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 9.7e-135 484.2 384 63.8
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 1.3e-134 483.8 410 60.5
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 4.8e-134 481.9 373 65.1
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 6.3e-134 481.5 390 61.3
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 1.4e-133 480.3 400 60.2
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 3.1e-133 479.2 401 59.6
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 9.0e-133 477.6 381 62.5
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 5.9e-132 474.9 388 61.3
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 7.6e-132 474.6 422 58.3
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 4.2e-130 468.8 395 60.3
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 2.7e-129 466.1 383 61.6
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 2.7e-129 466.1 342 67.8
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 7.9e-129 464.5 340 67.9
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 7.9e-129 464.5 365 64.9
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 1.8e-128 463.4 386 60.6
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 6.7e-128 461.5 371 61.7
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 2.5e-127 459.5 371 61.5
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 2.4e-125 453.0 382 58.4
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 7.7e-124 448.0 386 57.3
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 8.5e-123 444.5 382 57.6
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 1.1e-122 444.1 389 59.4
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 1.2e-121 440.7 406 53.7
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 1.2e-121 440.7 387 56.6
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 3.6e-121 439.1 360 63.6
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 4.7e-121 438.7 382 56.8
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 6.1e-121 438.3 388 58.0
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 1.0e-120 437.6 388 58.8
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 2.3e-120 436.4 396 55.3
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 1.1e-119 434.1 398 54.8
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 1.5e-119 433.7 368 60.1
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 3.3e-119 432.6 407 54.5
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 3.3e-119 432.6 407 54.3
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 3.3e-119 432.6 407 54.5
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 7.4e-119 431.4 402 54.2
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 9.7e-119 431.0 403 54.1
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 1.3e-118 430.6 309 70.2
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 1.3e-118 430.6 381 59.3
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 3.7e-118 429.1 386 54.7
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 4.8e-118 428.7 271 74.2
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 8.2e-118 427.9 393 55.0
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 1.2e-116 424.1 381 58.3
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 1.2e-116 424.1 388 58.2
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 2.0e-116 423.3 378 58.2
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 4.5e-116 422.2 334 64.4
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 5.9e-116 421.8 387 55.8
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.9e-114 416.8 328 63.7
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 3.9e-112 409.1 335 59.1
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 7.4e-111 404.8 271 72.0
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 3.1e-109 399.4 271 70.8
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 7.0e-109 398.3 304 64.1
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 8.5e-107 391.3 383 55.6
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 3.2e-106 389.4 368 53.3
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 6.1e-105 385.2 252 70.6
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 4.0e-104 382.5 381 54.3
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 1.3e-102 377.5 387 53.2
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 4.8e-102 375.6 389 51.2
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 9.1e-101 371.3 384 50.5
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 1.6e-100 370.5 384 53.4
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 5.9e-100 368.6 379 50.9
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 1.6e-97 360.5 383 52.5
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 5.4e-93 345.5 275 64.0
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 5.4e-93 345.5 275 62.9
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 7.0e-93 345.1 322 57.8
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 4.5e-92 342.4 275 64.0
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 3.8e-91 339.3 275 64.0
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 1.6e-89 334.0 301 55.1
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 6.1e-89 332.0 289 60.9
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 5.0e-83 312.4 275 60.7
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 1.9e-82 310.5 322 49.1
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 2.5e-82 310.1 230 64.8
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 9.5e-82 308.1 317 51.4
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 3.7e-70 269.6 334 46.7
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 8.3e-70 268.5 192 66.1
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 5.4e-69 265.8 232 57.3
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 4.6e-68 262.7 163 73.0
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 1.0e-67 261.5 279 51.6
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 1.6e-65 254.2 394 42.6
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 2.4e-56 223.8 230 51.7
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 2.8e-49 200.3 129 76.0
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 1.3e-46 191.4 144 59.7
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 2.4e-45 187.2 108 84.3
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.6e-44 184.5 108 81.5
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.6e-44 184.5 108 81.5
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 4.6e-44 183.0 107 82.2
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 3.0e-43 180.3 107 81.3
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 3.1e-40 170.2 107 77.6
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 1.2e-39 168.3 111 73.9
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 7.6e-39 165.6 430 31.9
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 4.9e-38 162.9 136 61.8
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.1e-37 161.8 309 37.2
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 2.1e-36 157.5 106 74.5
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 3.0e-35 153.7 447 32.0
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 4.8e-33 146.4 93 76.3
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 9.0e-32 142.1 161 52.8
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 9.0e-32 142.1 85 81.2
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 1.2e-31 141.7 136 54.4
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 1.7e-30 137.9 120 59.2
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 3.4e-23 113.6 83 74.7
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 5.8e-23 112.8 118 52.5
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 1.3e-19 101.7 107 51.4
Actinidia12240 Actinidia chinensis HOM05D004012 ORTHO05D004752 3.3e-18 97.1 95 54.7
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 6.3e-17 92.8 51 86.3
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 3.8e-14 83.6 53 77.4
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 9.4e-13 79.0 123 39.8
PSO761G0569 Papaver somniferum HOM05D004012 ORTHO05D004752 4.6e-12 76.6 54 66.7
VMungo0647G1024 Vigna mungo HOM05D004443 ORTHO05D005421 3.7e-09 67.0 72 44.4
Actinidia20627 Actinidia chinensis HOM05D004012 ORTHO05D004752 5.3e-08 63.2 71 46.5
PRCOL_00001851 Prasinoderma coloniale HOM05D004012 ORTHO05D004752 2.0e-07 61.2 119 32.8
Cc07_g20530 Coffea canephora HOM05D004012 ORTHO05D004752 4.5e-07 60.1 75 48.0


User provided reference genes

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