Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 9.8e-253 876.3 443 100.0
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 1.7e-220 769.2 387 99.2
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 2.1e-202 709.1 435 80.9
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 5.9e-173 611.3 428 71.3
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 5.0e-172 608.2 428 71.3
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 5.0e-172 608.2 438 70.8
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 2.5e-171 605.9 429 70.4
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 1.2e-170 603.6 429 69.2
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 2.7e-170 602.4 436 69.0
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 4.7e-170 601.7 436 69.7
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 3.9e-169 598.6 436 69.5
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 8.8e-169 597.4 429 69.5
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 1.1e-168 597.0 436 68.8
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 1.5e-168 596.7 427 69.3
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 3.3e-168 595.5 442 68.8
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 7.4e-168 594.3 428 68.0
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 2.8e-167 592.4 429 70.4
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 3.7e-167 592.0 428 68.5
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 1.1e-166 590.5 431 68.9
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.4e-166 590.1 431 69.1
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 1.8e-166 589.7 429 69.0
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 1.8e-166 589.7 429 69.2
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 1.8e-166 589.7 429 68.1
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 5.3e-166 588.2 428 68.5
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 7.0e-166 587.8 431 68.9
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 2.6e-165 585.9 429 69.9
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 3.5e-165 585.5 430 66.7
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 5.9e-165 584.7 435 67.6
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 5.9e-165 584.7 466 65.5
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 1.3e-164 583.6 429 68.3
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 2.9e-164 582.4 431 68.4
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 3.8e-164 582.0 431 67.1
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 5.0e-164 581.6 429 67.8
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 5.0e-164 581.6 428 67.3
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 5.0e-164 581.6 428 68.5
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 6.5e-164 581.3 431 68.4
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 1.4e-163 580.1 409 71.1
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 1.9e-163 579.7 428 67.5
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 3.2e-163 578.9 431 68.2
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 4.2e-163 578.6 431 67.3
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 1.6e-162 576.6 431 68.9
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 1.6e-162 576.6 431 68.9
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 2.1e-162 576.2 441 66.7
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 3.6e-162 575.5 439 67.7
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 4.7e-162 575.1 428 67.1
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 1.8e-161 573.2 431 68.4
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 3.0e-161 572.4 456 64.9
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 8.8e-161 570.9 436 66.3
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 2.2e-159 566.2 431 66.6
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 3.1e-158 562.4 431 65.9
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 4.1e-158 562.0 427 65.6
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 5.3e-158 561.6 428 65.2
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 9.1e-158 560.8 428 66.4
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 9.1e-158 560.8 428 66.4
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 1.6e-157 560.1 436 64.2
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 1.0e-156 557.4 431 65.9
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 1.9e-155 553.1 447 62.6
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 7.2e-155 551.2 437 63.2
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 7.2e-155 551.2 396 69.4
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 1.2e-154 550.4 427 64.6
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 4.7e-154 548.5 435 63.7
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 4.7e-154 548.5 448 61.8
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 5.7e-152 541.6 433 64.0
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 6.3e-151 538.1 442 62.2
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 9.1e-150 534.3 389 68.9
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 5.9e-149 531.6 387 68.7
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 1.0e-148 530.8 429 61.5
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 3.8e-148 528.9 431 62.6
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 3.2e-147 525.8 433 60.5
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 7.2e-147 524.6 397 65.7
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 9.4e-147 524.2 429 60.8
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 2.0e-144 516.5 434 59.7
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 3.4e-144 515.8 455 56.5
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 7.5e-144 514.6 443 58.7
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 7.5e-144 514.6 436 61.7
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 9.8e-144 514.2 429 59.9
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 2.2e-143 513.1 435 60.7
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 3.7e-143 512.3 445 58.2
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 3.7e-143 512.3 435 61.4
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 1.8e-142 510.0 454 57.5
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 1.8e-142 510.0 454 57.7
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 2.4e-142 509.6 449 57.7
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 3.1e-142 509.2 450 57.6
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 9.1e-142 507.7 415 62.9
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 1.6e-141 506.9 356 72.5
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 2.7e-141 506.1 438 59.6
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 1.7e-140 503.4 428 62.1
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 2.3e-140 503.1 440 58.2
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 5.5e-139 498.4 433 57.0
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 2.8e-138 496.1 432 60.9
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 3.6e-138 495.7 425 60.7
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 4.7e-138 495.4 434 58.8
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 6.1e-138 495.0 434 60.8
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 4.0e-137 492.3 381 66.4
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 2.2e-135 486.5 389 62.7
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 8.3e-135 484.6 382 62.3
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 1.6e-133 480.3 386 62.2
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 1.6e-133 480.3 373 65.1
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 5.9e-133 478.4 386 61.9
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 1.1e-131 474.2 423 57.9
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 3.6e-130 469.2 318 72.3
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.8e-129 466.8 351 65.8
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 4.4e-128 462.2 415 56.4
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 5.8e-128 461.8 343 67.9
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 1.7e-127 460.3 428 55.6
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.2e-127 459.9 430 58.1
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 6.0e-125 451.8 460 55.0
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 6.0e-125 451.8 428 57.0
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 5.0e-124 448.7 307 70.0
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 1.9e-123 446.8 436 54.4
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 2.8e-122 443.0 440 55.2
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 3.6e-122 442.6 431 56.1
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 4.7e-122 442.2 432 53.5
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 5.2e-121 438.7 426 54.2
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 2.2e-119 433.3 430 55.8
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 2.9e-119 433.0 298 70.5
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 1.0e-116 424.5 381 58.3
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 6.2e-114 415.2 328 63.7
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 4.9e-111 405.6 348 58.6
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 2.7e-93 346.7 275 62.9
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 4.6e-93 345.9 275 64.0
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 6.0e-93 345.5 322 57.8
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 3.9e-92 342.8 275 64.0
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 3.3e-91 339.7 275 64.0
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 1.4e-89 334.3 279 60.9
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 1.8e-89 334.0 289 61.2
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 3.1e-89 333.2 441 47.4
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 3.3e-83 313.2 350 48.9
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 4.3e-83 312.8 275 60.7
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 5.6e-83 312.4 322 49.4
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 9.6e-83 311.6 230 65.2
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 1.9e-70 270.8 334 47.0
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 2.7e-69 266.9 192 66.1
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 1.5e-67 261.2 163 73.0
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 5.7e-67 259.2 279 51.3
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 9.7e-67 258.5 155 83.2
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.1e-65 255.0 155 81.3
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.1e-65 255.0 155 81.3
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 1.4e-65 254.6 154 81.8
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 1.5e-64 251.1 154 81.2
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 4.6e-61 239.6 158 75.9
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.2e-56 224.9 230 51.7
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 7.7e-56 222.2 145 76.6
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 2.2e-55 220.7 495 36.2
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 5.0e-55 219.5 183 62.3
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 4.2e-54 216.5 140 77.1
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 2.7e-53 213.8 132 81.1
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 2.2e-47 194.1 182 55.5
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 5.0e-47 193.0 144 59.7
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 1.9e-46 191.0 130 78.5
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 1.9e-46 191.0 122 77.9
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 1.4e-41 174.9 461 31.9
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 1.7e-39 167.9 98 85.7
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 6.5e-39 166.0 182 53.8
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 4.2e-38 163.3 309 37.2
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 3.0e-36 157.1 106 74.5
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 2.4e-33 147.5 129 59.7
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 3.0e-28 130.6 146 51.4
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 6.6e-23 112.8 118 52.5
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 1.2e-21 108.6 68 80.9
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 1.4e-20 105.1 215 34.4
Ciclev10006318m.g Citrus clementina HOM05D004012 ORTHO05D004752 2.9e-18 97.4 58 84.5
Actinidia12240 Actinidia chinensis HOM05D004012 ORTHO05D004752 3.7e-18 97.1 95 54.7
Oeu046377.1 Olea europaea HOM05D004012 ORTHO05D004752 2.0e-16 91.3 55 85.5
PRCOL_00001851 Prasinoderma coloniale HOM05D004012 ORTHO05D004752 4.6e-16 90.1 195 33.8
PSO761G0569 Papaver somniferum HOM05D004012 ORTHO05D004752 5.2e-12 76.6 54 66.7
VMungo0647G1024 Vigna mungo HOM05D004443 ORTHO05D005421 4.1e-09 67.0 72 44.4
Actinidia20627 Actinidia chinensis HOM05D004012 ORTHO05D004752 6.0e-08 63.2 71 46.5
Cc07_g20530 Coffea canephora HOM05D004012 ORTHO05D004752 5.0e-07 60.1 75 48.0


User provided reference genes

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