Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H04934 Eucalyptus grandis HOM05D005030 ORTHO05D006490 0.0e+00 2575.4 1318 100.0
PGR102G2159 Punica granatum HOM05D005030 ORTHO05D006490 0.0e+00 1672.1 1346 67.1
Duzib147G1675 Durio zibethinus HOM05D005030 ORTHO05D006490 0.0e+00 1581.2 1360 63.9
Atru.chr4.774 Acer truncatum HOM05D005030 ORTHO05D006490 0.0e+00 1579.7 1363 63.8
Thecc.01G124600 Theobroma cacao HOM05D005030 ORTHO05D006490 0.0e+00 1565.1 1360 63.2
GSVIVG01026545001 Vitis vinifera HOM05D005030 ORTHO05D006490 0.0e+00 1560.8 1361 63.3
Dinv24313 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 1555.4 1383 62.3
Gohir.D11G232200 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1555.4 1361 63.0
Cfa002838 Carpinus fangiana HOM05D005030 ORTHO05D006490 0.0e+00 1553.9 1362 63.5
Ciclev10024723m.g Citrus clementina HOM05D005030 ORTHO05D006490 0.0e+00 1552.7 1343 63.1
Gohir.A11G230400 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1546.6 1361 63.1
Gorai.002G151400 Gossypium raimondii HOM05D005030 ORTHO05D006490 0.0e+00 1546.6 1361 63.1
Actinidia06653 Actinidia chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1536.5 1362 62.5
Potri.007G110800 Populus trichocarpa HOM05D005030 ORTHO05D006490 0.0e+00 1502.6 1360 60.8
Nn5g28681 Nelumbo nucifera HOM05D005030 ORTHO05D006490 0.0e+00 1477.6 1379 59.7
Prupe.3G147500 Prunus persica HOM05D005030 ORTHO05D006490 0.0e+00 1475.3 1352 60.6
TWI31G0652 Tripterygium wilfordii HOM05D005030 ORTHO05D006490 0.0e+00 1458.7 1332 60.4
Sabra07G0090700 Salix brachista HOM05D005030 ORTHO05D006490 0.0e+00 1443.3 1443 57.3
QL06p030436 Quercus lobata HOM05D005030 ORTHO05D006490 0.0e+00 1437.2 1491 55.7
Ca_17653_v3 Cicer arietinum L. HOM05D005030 ORTHO05D006490 0.0e+00 1428.3 1337 59.0
VMungo0251G0340 Vigna mungo HOM05D005030 ORTHO05D006490 0.0e+00 1428.3 1324 57.8
Dinv05712 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 1426.8 1358 60.0
CSS0019451 Camellia sinensis var. sinensis HOM05D005030 ORTHO05D006490 0.0e+00 1424.8 1473 57.1
Lj2A602G37 Lonicera japonica HOM05D005030 ORTHO05D006490 0.0e+00 1414.8 1394 57.5
CsaV3_6G041830 Cucumis sativus L. HOM05D005030 ORTHO05D006490 0.0e+00 1395.6 1360 57.6
ClCG01G015590 Citrullus lanatus HOM05D005030 ORTHO05D006490 0.0e+00 1392.1 1355 58.2
Phvul.002G270100 Phaseolus vulgaris HOM05D005030 ORTHO05D006490 0.0e+00 1388.2 1326 57.0
Sed0011527 Sechium edule HOM05D005030 ORTHO05D006490 0.0e+00 1387.1 1358 57.2
Psat7g048200 Pisum sativum HOM05D005030 ORTHO05D006490 0.0e+00 1380.9 1330 56.2
Glyma.05G189400 Glycine max HOM05D005030 ORTHO05D006490 0.0e+00 1378.6 1329 56.7
Sopen11g001650 Solanum pennellii HOM05D005030 ORTHO05D006490 0.0e+00 1367.8 1364 55.7
TPR.G37387 Trifolium pratense HOM05D005030 ORTHO05D006490 0.0e+00 1365.9 1394 54.5
Glyma.08G147000 Glycine max HOM05D005030 ORTHO05D006490 0.0e+00 1365.1 1329 56.1
MBI18_g25945_MAGBIO Magnolia biondii HOM05D005030 ORTHO05D006490 0.0e+00 1357.0 1358 55.6
Sc03g0005100 Simmondsia chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1355.9 1347 56.1
Medtr8g093100 Medicago truncatula HOM05D005030 ORTHO05D006490 0.0e+00 1354.3 1337 54.9
MELO3C008038.2 Cucumis melo HOM05D005030 ORTHO05D006490 0.0e+00 1353.2 1417 54.8
Cc08_g02710 Coffea canephora HOM05D005030 ORTHO05D006490 0.0e+00 1347.0 1382 54.9
arahy.Tifrunner.gnm1.ann1.CRY23I Arachis hypogaea HOM05D005030 ORTHO05D006490 0.0e+00 1343.2 1332 57.0
RcHm_v2.0_Chr2g0120111 Rosa chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1334.3 1355 55.7
Aqoxy5G02153 Aquilegia oxysepala HOM05D005030 ORTHO05D006490 0.0e+00 1331.6 1359 55.5
Nitab4.5_0002909g0070 Nicotiana tabacum HOM05D005030 ORTHO05D006490 0.0e+00 1331.6 1357 55.9
arahy.Tifrunner.gnm1.ann1.HR53B8 Arachis hypogaea HOM05D005030 ORTHO05D006490 0.0e+00 1327.8 1332 56.6
Migut.H01102 Erythranthe guttata HOM05D005030 ORTHO05D006490 0.0e+00 1317.4 1348 55.0
HanXRQChr02g0043651 Helianthus annuus HOM05D005030 ORTHO05D006490 0.0e+00 1312.4 1371 53.9
THA.LOC104821859 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 0.0e+00 1306.6 1357 55.0
Lsat_1_v5_gn_1_117161 Lactuca sativa HOM05D005030 ORTHO05D006490 0.0e+00 1303.9 1369 54.1
Oeu037792.2 Olea europaea HOM05D005030 ORTHO05D006490 0.0e+00 1296.2 1405 53.9
FvH4_1g23980 Fragaria vesca HOM05D005030 ORTHO05D006490 0.0e+00 1295.8 1358 54.2
Lalb_Chr13g0296501 Lupinus albus HOM05D005030 ORTHO05D006490 0.0e+00 1293.1 1334 54.6
Lalb_Chr12g0203281 Lupinus albus HOM05D005030 ORTHO05D006490 0.0e+00 1289.6 1322 54.4
THA.LOC104820424 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 0.0e+00 1288.5 1338 55.2
Hund04465 Selenicereus undatus HOM05D005030 ORTHO05D006490 0.0e+00 1288.1 1339 54.1
FAN26G2615 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1278.1 1357 53.9
FAN19G2772 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1277.7 1394 52.8
FAN28G1848 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1271.9 1399 52.7
PSO210G3052 Papaver somniferum HOM05D005030 ORTHO05D006490 0.0e+00 1269.6 1367 54.1
DCAR_001349 Daucus carota HOM05D005030 ORTHO05D006490 0.0e+00 1265.0 1431 52.4
Peaxi162Scf00012g02419 Petunia axillaris HOM05D005030 ORTHO05D006490 0.0e+00 1265.0 1397 52.7
AUR62017924 Chenopodium quinoa HOM05D005030 ORTHO05D006490 0.0e+00 1264.2 1330 52.8
FAN23G1259 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1264.2 1396 52.1
CiPaw.03G127500 Carya illinoinensis HOM05D005030 ORTHO05D006490 0.0e+00 1261.9 1378 55.1
AUR62003613 Chenopodium quinoa HOM05D005030 ORTHO05D006490 0.0e+00 1260.4 1354 52.5
Aa31LG8G5540 Aethionema arabicum HOM05D005030 ORTHO05D006490 0.0e+00 1258.4 1332 53.8
COL.COLO4_13999 Corchorus olitorius HOM05D005030 ORTHO05D006490 0.0e+00 1256.9 1383 53.2
Lj4g0022240 Lotus japonicus HOM05D005030 ORTHO05D006490 0.0e+00 1256.5 1325 53.5
CANSAT01G2434 Cannabis sativa HOM05D005030 ORTHO05D006490 0.0e+00 1254.6 1355 53.0
Nitab4.5_0003048g0010 Nicotiana tabacum HOM05D005030 ORTHO05D006490 0.0e+00 1248.0 1385 52.4
BcaB06g25924 Brassica carinata HOM05D005030 ORTHO05D006490 0.0e+00 1245.3 1342 52.8
BraA05t21931Z Brassica rapa HOM05D005030 ORTHO05D006490 0.0e+00 1244.2 1345 52.9
A05p30890 Brassica napus HOM05D005030 ORTHO05D006490 0.0e+00 1239.2 1346 52.7
SGA_v2.0_scaffold137G35137 Striga asiatica HOM05D005030 ORTHO05D006490 0.0e+00 1239.2 1421 50.7
Ah.03g146670 Amaranthus hybridus HOM05D005030 ORTHO05D006490 0.0e+00 1238.8 1345 51.6
Thhalv10019906m.g Eutrema salsugineum HOM05D005030 ORTHO05D006490 0.0e+00 1238.0 1344 53.6
BcaC05g28579 Brassica carinata HOM05D005030 ORTHO05D006490 0.0e+00 1234.2 1347 52.5
C05p46820 Brassica napus HOM05D005030 ORTHO05D006490 0.0e+00 1234.2 1347 52.5
BolC5t33412H Brassica oleracea HOM05D005030 ORTHO05D006490 0.0e+00 1234.2 1347 52.5
AT3G18730 Arabidopsis thaliana HOM05D005030 ORTHO05D006490 0.0e+00 1233.8 1330 53.2
PSO832G2315 Papaver somniferum HOM05D005030 ORTHO05D006490 0.0e+00 1233.4 1376 52.8
CARHR094120 Cardamine hirsuta HOM05D005030 ORTHO05D006490 0.0e+00 1227.2 1337 52.7
Sp3g16780 Schrenkiella parvula HOM05D005030 ORTHO05D006490 0.0e+00 1222.2 1346 52.5
AL3G32080 Arabidopsis lyrata HOM05D005030 ORTHO05D006490 0.0e+00 1217.6 1329 52.4
ECA240G4559 Erigeron canadensis HOM05D005030 ORTHO05D006490 0.0e+00 1206.0 1297 54.3
Os02g0782800 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 0.0e+00 1186.4 1352 50.7
Cc07_g17780 Coffea canephora HOM05D005030 ORTHO05D006490 0.0e+00 1171.0 1261 53.6
Carub.0003s1851 Capsella rubella HOM05D005030 ORTHO05D006490 0.0e+00 1170.2 1340 50.8
Manes.12G152000 Manihot esculenta HOM05D005030 ORTHO05D006490 0.0e+00 1169.5 1069 60.1
ATR0772G104 Amborella trichopoda HOM05D005030 ORTHO05D006490 0.0e+00 1159.8 1359 50.3
Rhsim10G0138800 Rhododendron simsii HOM05D005030 ORTHO05D006490 0.0e+00 1137.1 1352 51.6
unitig_0.g2514 Utricularia gibba HOM05D005030 ORTHO05D006490 0.0e+00 1103.2 1334 48.2
CDE06G1651 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 0.0e+00 1099.3 1332 48.5
Zm00001eb192940 Zea mays HOM05D005030 ORTHO05D006490 2.2e-308 1062.8 1109 53.9
MD00G1172700 Malus domestica HOM05D005030 ORTHO05D006490 5.1e-305 1051.6 1355 46.5
HPP92_005719 Vanilla planifolia HOM05D005030 ORTHO05D006490 4.2e-291 1005.4 1308 47.6
Hma1.2p1_0006F.1_g004750 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 5.6e-280 968.4 916 59.8
Haze_25135 Corylus avellana HOM05D005030 ORTHO05D006490 2.0e-248 863.6 914 56.0
Solyc11g005690.3 Solanum lycopersicum HOM05D005030 ORTHO05D006490 2.0e-240 837.0 843 55.5
MSTRG.2678 Avicennia marina HOM05D005030 ORTHO05D006490 5.7e-224 782.3 683 63.1
Cpa.g.sc42.107 Carica papaya HOM05D005030 ORTHO05D006490 5.0e-220 769.2 641 65.2
SHI11439 Sapria himalayana HOM05D005030 ORTHO05D006490 1.0e-217 761.5 760 56.6
TAR381G0402 Trochodendron aralioides HOM05D005030 ORTHO05D006490 1.7e-212 744.2 709 59.2
CiPaw.03G127200 Carya illinoinensis HOM05D005030 ORTHO05D006490 3.3e-203 713.4 813 53.0
MD09G1255500 Malus domestica HOM05D005030 ORTHO05D006490 2.9e-199 700.3 912 48.7
CiPaw.03G127600 Carya illinoinensis HOM05D005030 ORTHO05D006490 1.2e-197 694.9 823 50.2
Cpa.g.sc42.108 Carica papaya HOM05D005030 ORTHO05D006490 1.6e-197 694.5 687 57.1
CiPaw.03G127100 Carya illinoinensis HOM05D005030 ORTHO05D006490 8.1e-194 682.2 480 72.3
Mapoly0047s0105 Marchantia polymorpha HOM05D005030 ORTHO05D006490 9.0e-169 599.0 1276 34.6
SEGI_29284 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 1.9e-155 554.7 736 43.5
MSTRG.2677 Avicennia marina HOM05D005030 ORTHO05D006490 2.5e-155 554.3 596 51.5
MD17G1248700 Malus domestica HOM05D005030 ORTHO05D000105 1.8e-153 548.1 1347 33.2
Haze_25140 Corylus avellana HOM05D005030 ORTHO05D006490 7.1e-150 536.2 358 75.7
EL10Ac6g15267 Beta vulgaris HOM05D005030 ORTHO05D006490 9.4e-142 509.2 1045 35.2
SMO203G0163 Selaginella moellendorffii HOM05D005030 ORTHO05D006490 3.6e-141 507.3 1330 29.6
CDE08G0761 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 4.3e-139 500.4 358 69.3
CAN.G802.6 Capsicum annuum HOM05D005030 ORTHO05D006490 7.2e-134 483.0 512 53.7
Pp3c6_6440 Physcomitrium patens HOM05D005030 ORTHO05D006490 2.3e-132 478.0 1290 29.2
AagrBONN_evm.TU.Sc2ySwM_228.5700 Anthoceros agrestis HOM05D005030 ORTHO05D006490 5.1e-132 476.9 1134 32.5
SEGI_07118 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 9.1e-121 439.5 417 52.5
SEGI_08752 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 5.9e-96 357.1 678 35.8
ECA234G2315 Erigeron canadensis HOM05D005030 ORTHO05D006490 8.6e-95 353.2 347 52.2
SEGI_25247 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 1.1e-86 326.2 326 50.3
Os02g0784100 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 1.3e-82 312.8 243 63.8
FAN23G1614 Fragaria x ananassa HOM05D005030 ORTHO05D006490 4.6e-80 304.3 351 49.9
vmacro12845 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 1.9e-65 255.8 313 49.8
Thecc.01G125300 Theobroma cacao HOM05D005030 ORTHO05D006490 2.6e-59 235.3 359 45.4
TAR381G0325 Trochodendron aralioides HOM05D005030 ORTHO05D006490 4.9e-58 231.1 234 58.5
vmacro12844 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 5.1e-55 221.1 321 43.3
ECA234G1901 Erigeron canadensis HOM05D005030 ORTHO05D006490 2.2e-50 205.7 282 42.9
PGSC0003DMG400025561 Solanum tuberosum HOM05D005030 ORTHO05D006490 2.3e-47 195.7 267 45.3
TAR625G0665 Trochodendron aralioides HOM05D005030 ORTHO05D006490 1.5e-46 193.0 121 77.7
vmacro12843 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 2.1e-45 189.1 201 53.7
CBR_g36663 Chara braunii HOM05D005030 ORTHO05D006490 1.0e-31 143.7 510 25.7
MD17G1248600 Malus domestica HOM05D005030 ORTHO05D006490 1.8e-31 142.9 290 37.2
SEGI_13008 Sequoiadendron giganteum HOM05D005030 ORTHO05D050943 1.1e-28 133.7 420 29.5
CBR_g61481 Chara braunii HOM05D005030 ORTHO05D001575 2.4e-28 132.5 363 27.8
TAR376G0117 Trochodendron aralioides HOM05D005030 ORTHO05D006490 2.5e-25 122.5 166 47.0
SEGI_13201 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 7.2e-25 120.9 420 27.6
BcaNung06136 Brassica carinata HOM05D005030 ORTHO05D006490 6.1e-24 117.9 211 38.4
Sopen11g004310 Solanum pennellii HOM05D000399 ORTHO05D000304 1.4e-23 116.7 85 67.1
Hma1.2p1_0006F.1_g004730 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 8.2e-21 107.5 114 49.1
CBR_g36665 Chara braunii HOM05D005030 ORTHO05D006490 1.4e-17 96.7 446 24.0
Sc05g0004550 Simmondsia chinensis HOM05D005030 ORTHO05D006490 7.9e-16 90.9 85 55.3
SEGI_37730 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 2.2e-10 72.8 283 26.1
MBI11_g38367_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 4.2e-09 68.6 81 48.1
TAR376G0051 Trochodendron aralioides HOM05D005030 ORTHO05D006490 2.7e-08 65.9 96 44.8
TAR625G0866 Trochodendron aralioides HOM05D005030 ORTHO05D006490 1.0e-07 63.9 45 73.3
MBI19_g06116_MAGBIO Magnolia biondii HOM05D005030 ORTHO05D036548 3.0e-07 62.4 39 74.4
Actinidia09824 Actinidia chinensis HOM05D005030 ORTHO05D001675 6.7e-07 61.2 55 61.8
MBI17_g19044_MAGBIO Magnolia biondii HOM05D000853 ORTHO05D011152 3.3e-06 58.9 36 75.0
MBI14_g15971_MAGBIO Magnolia biondii HOM05D037163 ORTHO05D036548 4.4e-06 58.5 33 81.8


User provided reference genes

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