Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H04509 Eucalyptus grandis HOM05D005511 ORTHO05D006616 0.0e+00 1298.1 664 100.0
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 7.8e-262 907.1 689 71.6
QL12p025629 Quercus lobata HOM05D005511 ORTHO05D006616 1.3e-253 879.8 683 70.9
Dinv38802 Davidia involucrata HOM05D005511 ORTHO05D006616 1.9e-252 875.9 685 71.1
COL.COLO4_18647 Corchorus olitorius HOM05D005511 ORTHO05D006616 1.1e-250 870.2 677 68.8
GSVIVG01029743001 Vitis vinifera HOM05D005511 ORTHO05D006616 3.4e-249 865.1 688 69.9
TWI34G0645 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 4.4e-249 864.8 690 68.8
Thecc.09G000500 Theobroma cacao HOM05D005511 ORTHO05D006616 2.9e-248 862.1 677 69.0
GSVIVG01014608001 Vitis vinifera HOM05D005511 ORTHO05D006616 3.7e-248 861.7 688 70.2
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 1.0e-245 853.6 674 68.2
Sed0022409 Sechium edule HOM05D005511 ORTHO05D006616 4.7e-243 844.7 683 66.9
Gohir.A06G108200 Gossypium hirsutum HOM05D005511 ORTHO05D006616 1.8e-242 842.8 677 67.7
Lalb_Chr25g0287701 Lupinus albus HOM05D005511 ORTHO05D006616 1.8e-242 842.8 700 67.1
Cfa013295 Carpinus fangiana HOM05D005511 ORTHO05D006616 1.2e-241 840.1 682 68.3
TAR624G0177 Trochodendron aralioides HOM05D005511 ORTHO05D006616 1.2e-241 840.1 694 68.9
Phvul.001G199500 Phaseolus vulgaris HOM05D005511 ORTHO05D006616 2.6e-241 839.0 702 67.2
Hma1.2p1_1470F.1_g285590 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 2.4e-239 832.4 681 69.0
Gorai.010G125400 Gossypium raimondii HOM05D005511 ORTHO05D006616 2.1e-238 829.3 677 67.1
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 1.1e-236 823.5 684 65.4
CSS0031635 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 1.5e-236 823.2 688 68.8
CiPaw.07G210700 Carya illinoinensis HOM05D005511 ORTHO05D006616 1.9e-236 822.8 678 68.0
Cpa.g.sc81.17 Carica papaya HOM05D005511 ORTHO05D006616 1.6e-235 819.7 681 67.1
VMungo1383G1052 Vigna mungo HOM05D005511 ORTHO05D006616 2.8e-235 818.9 703 65.6
TWI32G1116 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 8.1e-235 817.4 687 65.5
Duzib168G0441 Durio zibethinus HOM05D005511 ORTHO05D006616 4.0e-234 815.1 679 66.1
Glyma.17G079400 Glycine max HOM05D005511 ORTHO05D006616 6.8e-234 814.3 710 65.5
ClCG05G026390 Citrullus lanatus HOM05D005511 ORTHO05D006616 1.5e-233 813.1 684 65.1
Glyma.12G151100 Glycine max HOM05D005511 ORTHO05D006616 9.9e-233 810.4 704 66.2
Ca_09096_v3 Cicer arietinum L. HOM05D005511 ORTHO05D006616 5.4e-231 804.7 689 65.7
CAN.G423.39 Capsicum annuum HOM05D005511 ORTHO05D006616 6.0e-230 801.2 681 67.1
CAN.G841.12 Capsicum annuum HOM05D005511 ORTHO05D006616 2.3e-229 799.3 679 67.0
TPR.G32311 Trifolium pratense HOM05D005511 ORTHO05D006616 3.0e-229 798.9 695 64.0
Nitab4.5_0013218g0030 Nicotiana tabacum HOM05D005511 ORTHO05D006616 9.6e-228 793.9 680 66.9
Psat5g176520 Pisum sativum HOM05D005511 ORTHO05D006616 2.8e-227 792.3 688 65.6
Nitab4.5_0001801g0060 Nicotiana tabacum HOM05D005511 ORTHO05D006616 3.6e-227 792.0 680 66.6
DCAR_027476 Daucus carota HOM05D005511 ORTHO05D006616 6.2e-227 791.2 710 63.8
Sopen10g032680 Solanum pennellii HOM05D005511 ORTHO05D006616 8.1e-227 790.8 679 66.9
Solyc10g083200.2 Solanum lycopersicum HOM05D005511 ORTHO05D006616 1.8e-226 789.6 679 66.7
arahy.Tifrunner.gnm1.ann1.Q5NSRJ Arachis hypogaea HOM05D005511 ORTHO05D006616 4.0e-226 788.5 674 65.9
Peaxi162Scf00096g01112 Petunia axillaris HOM05D005511 ORTHO05D006616 1.5e-225 786.6 680 66.0
Cc03_g10050 Coffea canephora HOM05D005511 ORTHO05D006616 2.0e-225 786.2 680 65.6
Potri.018G002000 Populus trichocarpa HOM05D005511 ORTHO05D006616 5.8e-225 784.6 650 66.2
PGR142G1479 Punica granatum HOM05D005511 ORTHO05D006616 9.9e-225 783.9 683 67.1
Lj1g0000151 Lotus japonicus HOM05D005511 ORTHO05D006616 1.7e-224 783.1 697 64.4
Medtr1g092770 Medicago truncatula HOM05D005511 ORTHO05D006616 3.2e-223 778.9 688 63.8
PGSC0003DMG400028246 Solanum tuberosum HOM05D005511 ORTHO05D006616 7.1e-223 777.7 676 66.3
Actinidia31365 Actinidia chinensis HOM05D005511 ORTHO05D006616 9.3e-223 777.3 690 64.9
Peaxi162Scf01013g00235 Petunia axillaris HOM05D005511 ORTHO05D006616 1.1e-220 770.4 682 64.5
arahy.Tifrunner.gnm1.ann1.V3D0DH Arachis hypogaea HOM05D005511 ORTHO05D006616 9.6e-220 767.3 709 62.3
Hund14329 Selenicereus undatus HOM05D005511 ORTHO05D006616 2.1e-219 766.1 679 63.0
Nitab4.5_0000167g0180 Nicotiana tabacum HOM05D005511 ORTHO05D006616 4.8e-219 765.0 677 64.4
Potri.006G279800 Populus trichocarpa HOM05D005511 ORTHO05D006616 3.1e-218 762.3 683 63.4
Manes.03G000300 Manihot esculenta HOM05D005511 ORTHO05D006616 9.9e-217 757.3 672 64.3
MSTRG.966 Avicennia marina HOM05D005511 ORTHO05D006616 1.7e-216 756.5 678 62.4
AT4G31200 Arabidopsis thaliana HOM05D005511 ORTHO05D006616 2.9e-216 755.7 668 62.3
CANSAT25G2351 Cannabis sativa HOM05D005511 ORTHO05D006616 2.9e-216 755.7 697 63.0
PSO541G5250 Papaver somniferum HOM05D005511 ORTHO05D006616 3.8e-216 755.4 683 63.3
EL10Ac5g11907 Beta vulgaris HOM05D005511 ORTHO05D006616 1.1e-215 753.8 680 62.8
Oeu009791.1 Olea europaea HOM05D005511 ORTHO05D006616 5.1e-213 745.0 682 62.3
Thhalv10024645m.g Eutrema salsugineum HOM05D005511 ORTHO05D006616 8.7e-213 744.2 647 62.6
Ah.07g201420 Amaranthus hybridus HOM05D005511 ORTHO05D006616 4.3e-212 741.9 680 62.6
Oeu001428.2 Olea europaea HOM05D005511 ORTHO05D006616 1.3e-211 740.3 680 61.5
Rhsim04G0157200 Rhododendron simsii HOM05D005511 ORTHO05D006616 2.4e-210 736.1 665 63.5
CARHR239100 Cardamine hirsuta HOM05D005511 ORTHO05D006616 3.1e-210 735.7 652 62.6
MD08G1126000 Malus domestica HOM05D005511 ORTHO05D006616 3.1e-210 735.7 699 62.5
AL7G20880 Arabidopsis lyrata HOM05D005511 ORTHO05D006616 3.4e-209 732.3 666 61.4
Carub.0007s0934 Capsella rubella HOM05D005511 ORTHO05D006616 1.0e-208 730.7 663 60.9
vmacro03505 Vaccinium macrocarpon HOM05D005511 ORTHO05D006616 8.4e-208 727.6 674 62.9
Aqoxy4G02032 Aquilegia oxysepala HOM05D005511 ORTHO05D006616 2.7e-206 722.6 631 65.3
HPP92_005904 Vanilla planifolia HOM05D005511 ORTHO05D006616 4.6e-206 721.8 694 60.1
Lsat_1_v5_gn_4_32681 Lactuca sativa HOM05D005511 ORTHO05D006616 6.0e-206 721.5 653 63.2
Aa31LG11G2310 Aethionema arabicum HOM05D005511 ORTHO05D006616 7.9e-206 721.1 673 62.0
Sabra18G0005200 Salix brachista HOM05D005511 ORTHO05D006616 7.9e-206 721.1 642 62.0
Oeu018783.1 Olea europaea HOM05D005511 ORTHO05D006616 1.3e-205 720.3 680 59.6
THA.LOC104819918 Tarenaya hassleriana HOM05D005511 ORTHO05D006616 1.6e-203 713.4 671 61.3
Sp7g29080 Schrenkiella parvula HOM05D005511 ORTHO05D006616 3.7e-203 712.2 663 61.5
AUR62007421 Chenopodium quinoa HOM05D005511 ORTHO05D006616 1.2e-201 707.2 680 60.6
CDE07G1638 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 7.2e-199 698.0 692 59.8
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 6.1e-198 694.9 557 65.4
MD15G1105800 Malus domestica HOM05D005511 ORTHO05D006616 1.0e-197 694.1 703 60.2
MBI02_g34313_MAGBIO Magnolia biondii HOM05D005511 ORTHO05D006616 1.3e-197 693.7 678 60.5
Prupe.1G457600 Prunus persica HOM05D005511 ORTHO05D006616 3.3e-196 689.1 696 59.3
HanXRQChr03g0093821 Helianthus annuus HOM05D005511 ORTHO05D006616 1.8e-194 683.3 651 60.2
Sc03g0008920 Simmondsia chinensis HOM05D005511 ORTHO05D006616 5.9e-193 678.3 671 59.8
BraA01t00656Z Brassica rapa HOM05D005511 ORTHO05D006616 2.9e-192 676.0 673 58.4
A01p07040 Brassica napus HOM05D005511 ORTHO05D006616 3.8e-192 675.6 673 58.4
CSS0032846 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 8.5e-192 674.5 674 60.7
ECA234G2010 Erigeron canadensis HOM05D005511 ORTHO05D006616 1.9e-191 673.3 628 61.3
CDE06G2039 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 1.0e-189 667.5 672 59.4
Migut.H02336 Erythranthe guttata HOM05D005511 ORTHO05D006616 1.4e-189 667.2 673 59.3
BcaC09g51902 Brassica carinata HOM05D005511 ORTHO05D006616 5.7e-188 661.8 671 57.4
C01p07790 Brassica napus HOM05D005511 ORTHO05D006616 1.7e-187 660.2 671 57.2
Nitab4.5_0001579g0070 Nicotiana tabacum HOM05D005511 ORTHO05D006616 2.6e-185 652.9 731 55.4
BolC1t00765H Brassica oleracea HOM05D005511 ORTHO05D006616 3.8e-184 649.0 671 57.2
FvH4_2g36600 Fragaria vesca HOM05D005511 ORTHO05D006616 3.3e-180 636.0 604 60.3
ATR1145G079 Amborella trichopoda HOM05D005511 ORTHO05D006616 1.4e-178 630.6 668 57.3
Lj3A264G15 Lonicera japonica HOM05D005511 ORTHO05D006616 3.1e-178 629.4 612 61.6
RcHm_v2.0_Chr6g0305221 Rosa chinensis HOM05D005511 ORTHO05D006616 3.5e-177 625.9 546 63.2
FAN15G0681 Fragaria x ananassa HOM05D005511 ORTHO05D006616 1.5e-175 620.5 627 58.2
ATR0686G209 Amborella trichopoda HOM05D005511 ORTHO05D006616 1.3e-171 607.4 667 56.2
Os06g0682700 Oryza sativa ssp. japonica HOM05D005511 ORTHO05D006616 2.4e-170 603.2 559 59.2
FAN27G2128 Fragaria x ananassa HOM05D005511 ORTHO05D007122 1.5e-164 583.9 543 59.9
FAN20G1701 Fragaria x ananassa HOM05D005511 ORTHO05D007122 6.3e-163 578.6 542 59.4
AUR62027311 Chenopodium quinoa HOM05D005511 ORTHO05D006616 4.5e-153 545.8 558 56.5
unitig_32.g11169 Utricularia gibba HOM05D005511 ORTHO05D006616 2.5e-151 540.0 593 55.3
Nn1g03658 Nelumbo nucifera HOM05D005511 ORTHO05D006616 4.0e-149 532.7 428 69.9
SGA_v2.0_scaffold188G40311 Striga asiatica HOM05D005511 ORTHO05D006616 2.6e-148 530.0 555 55.3
Sc03g0008950 Simmondsia chinensis HOM05D005511 ORTHO05D006616 3.4e-148 529.6 488 60.9
Pp3c17_14220 Physcomitrium patens HOM05D005511 ORTHO05D006616 1.5e-143 514.2 683 47.9
Mapoly0058s0003 Marchantia polymorpha HOM05D005511 ORTHO05D006616 2.5e-135 486.9 674 47.3
Atru.chr7.2703 Acer truncatum HOM05D005511 ORTHO05D006616 3.2e-122 443.4 317 72.6
Sabra06G0216900 Salix brachista HOM05D005511 ORTHO05D006616 6.0e-121 439.1 347 68.0
Haze_21772 Corylus avellana HOM05D005511 ORTHO05D006616 1.2e-116 424.9 321 70.1
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 4.4e-116 422.9 346 67.9
Zm00001eb273620 Zea mays HOM05D005511 ORTHO05D006616 8.7e-112 408.7 374 59.4
Hma1.2p1_0379F.1_g139860 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 1.1e-106 391.7 315 69.5
SMO147G0244 Selaginella moellendorffii HOM05D005511 ORTHO05D006616 3.9e-104 383.3 661 41.0
Haze_21773 Corylus avellana HOM05D005511 ORTHO05D006616 3.4e-100 370.2 339 61.9
CBR_g44445 Chara braunii HOM05D005511 ORTHO05D006616 1.4e-90 338.2 910 33.3
CBR_g29483 Chara braunii HOM05D000785 ORTHO05D006616 1.9e-90 337.8 856 33.1
SEGI_09992 Sequoiadendron giganteum HOM05D005511 ORTHO05D006616 5.1e-80 303.1 367 50.7
SHI01952 Sapria himalayana HOM05D005511 ORTHO05D006616 1.9e-79 301.2 361 52.6
Sabra06G0216800 Salix brachista HOM05D005511 ORTHO05D006616 1.7e-70 271.6 333 53.2
SHI01951 Sapria himalayana HOM05D000002 ORTHO05D000001 1.4e-69 268.5 334 52.7
ATR0686G036 Amborella trichopoda HOM05D005511 ORTHO05D006616 6.7e-64 249.6 283 55.5
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 4.5e-60 236.9 224 59.4
VMungo1383G0863 Vigna mungo HOM05D005511 ORTHO05D006616 8.0e-57 226.1 142 82.4
unitig_748.g7741 Utricularia gibba HOM05D005511 ORTHO05D006616 9.7e-55 219.2 281 49.5
AagrBONN_evm.TU.Sc2ySwM_228.1219 Anthoceros agrestis HOM05D005511 ORTHO05D006616 1.3e-54 218.8 413 40.0
CDE06G0583 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 3.1e-45 187.6 184 51.1
ATR1145G067 Amborella trichopoda HOM05D005511 ORTHO05D006616 1.1e-42 179.1 257 43.6
Actinidia34689 Actinidia chinensis HOM05D005511 ORTHO05D006616 7.2e-42 176.4 200 55.0
Nitab4.5_0000365g0090 Nicotiana tabacum HOM05D005511 ORTHO05D006616 5.7e-39 166.8 125 72.8
Psat6g134200 Pisum sativum HOM05D005511 ORTHO05D006616 5.4e-37 160.2 131 64.9
CANSAT21G0937 Cannabis sativa HOM05D005511 ORTHO05D006616 1.7e-30 138.7 147 52.4
Cre04.g222300 Chlamydomonas reinhardtii HOM05D005511 ORTHO05D006616 5.9e-28 130.2 394 28.4
Sc03g0008960 Simmondsia chinensis HOM05D005511 ORTHO05D006616 8.1e-17 93.2 136 53.7
PGSC0003DMG400027627 Solanum tuberosum HOM05D005511 ORTHO05D006616 3.1e-16 91.3 81 58.0
Actinidia02692 Actinidia chinensis HOM05D005511 ORTHO05D006616 9.5e-10 69.7 107 51.4
Pp3c6_280 Physcomitrium patens HOM05D000251 ORTHO05D007889 3.4e-07 61.2 101 37.6
CANSAT80G2803 Cannabis sativa HOM05D000251 ORTHO05D007889 3.8e-06 57.8 94 36.2
Sc10g0009620 Simmondsia chinensis HOM05D000251 ORTHO05D007889 4.9e-06 57.4 89 36.0
TAR371G0581 Trochodendron aralioides HOM05D000874 ORTHO05D003941 4.9e-06 57.4 75 42.7
Actinidia31039 Actinidia chinensis HOM05D000251 ORTHO05D007889 6.4e-06 57.0 89 40.4
DCAR_015126 Daucus carota HOM05D000251 ORTHO05D007889 6.4e-06 57.0 109 34.9
RcHm_v2.0_Chr7g0184311 Rosa chinensis HOM05D000251 ORTHO05D007889 6.4e-06 57.0 89 40.4
Sabra12G0041800 Salix brachista HOM05D000251 ORTHO05D007889 6.4e-06 57.0 87 39.1
MD06G1209200 Malus domestica HOM05D000251 ORTHO05D007889 8.4e-06 56.6 96 38.5


User provided reference genes

Program Settings