Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 0.0e+00 2069.7 993 100.0
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 0.0e+00 1674.8 998 79.9
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 0.0e+00 1668.7 984 78.4
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 0.0e+00 1667.9 986 78.6
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 0.0e+00 1651.7 985 77.6
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 0.0e+00 1648.6 983 77.5
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 0.0e+00 1640.9 983 77.3
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1640.2 982 78.1
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 0.0e+00 1639.0 986 77.7
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 0.0e+00 1635.9 984 77.5
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 0.0e+00 1635.5 997 76.8
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 0.0e+00 1635.2 985 76.8
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 0.0e+00 1632.1 969 78.8
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1627.8 987 77.5
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 0.0e+00 1624.8 983 77.1
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1623.6 987 77.3
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1620.5 985 76.6
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1619.4 984 77.0
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1615.1 986 76.7
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1609.3 984 76.6
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 0.0e+00 1602.8 988 75.7
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1602.4 983 75.9
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 0.0e+00 1600.9 985 76.2
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1600.1 985 76.2
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 0.0e+00 1598.9 984 76.0
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1597.8 985 76.1
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1587.0 979 75.9
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1578.5 985 74.9
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 0.0e+00 1575.1 984 74.5
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1575.1 986 74.4
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1574.7 991 74.9
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1573.9 975 74.6
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 0.0e+00 1571.2 980 74.4
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 0.0e+00 1568.5 983 75.1
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1565.4 976 74.9
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1565.1 991 74.8
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1562.0 982 74.4
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 0.0e+00 1562.0 979 74.3
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1561.6 982 74.5
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1561.2 986 74.2
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1560.8 986 73.9
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 0.0e+00 1559.3 980 74.3
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1558.9 980 74.1
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 0.0e+00 1558.5 987 73.6
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 0.0e+00 1557.7 980 74.3
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1557.0 975 74.5
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1552.3 973 75.0
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1551.6 983 73.8
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1549.6 980 74.9
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 0.0e+00 1548.1 972 73.8
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1545.0 985 73.1
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1544.3 985 74.0
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 0.0e+00 1543.5 984 74.2
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 0.0e+00 1543.1 978 74.3
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 0.0e+00 1540.4 975 73.0
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1540.0 975 73.9
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1539.2 982 73.9
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1538.5 985 72.8
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1538.5 980 73.6
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 0.0e+00 1538.1 986 73.0
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 0.0e+00 1537.7 981 73.1
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1537.7 982 73.8
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1536.2 963 75.0
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1535.8 986 74.2
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1535.4 982 73.3
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 0.0e+00 1534.6 981 73.0
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1532.7 980 73.7
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1532.3 979 73.3
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1525.4 983 72.4
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 0.0e+00 1523.8 951 74.9
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1520.8 992 73.0
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 0.0e+00 1520.0 981 72.4
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1518.8 995 71.8
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1516.9 979 72.6
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1515.7 987 72.5
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1510.7 989 71.9
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 0.0e+00 1509.2 982 70.5
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 0.0e+00 1508.8 986 72.2
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 0.0e+00 1508.8 989 72.3
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1507.3 990 71.8
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 0.0e+00 1505.7 985 71.8
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1503.4 938 75.2
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1498.0 980 72.6
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1497.6 989 71.5
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1497.3 975 72.8
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1491.1 982 70.2
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 0.0e+00 1487.6 983 71.5
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1482.6 885 78.0
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1480.3 983 71.4
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 0.0e+00 1476.5 987 69.8
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 0.0e+00 1474.9 982 70.1
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 0.0e+00 1464.1 994 69.9
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1462.2 996 69.6
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 0.0e+00 1461.8 968 72.0
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 0.0e+00 1458.7 988 69.8
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 0.0e+00 1454.9 988 68.6
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 0.0e+00 1448.0 1004 69.7
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1440.6 880 75.9
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1437.9 979 68.7
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 0.0e+00 1435.6 990 69.4
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 0.0e+00 1432.2 985 69.4
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 0.0e+00 1427.2 987 68.9
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 0.0e+00 1425.2 986 68.7
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 0.0e+00 1421.4 980 69.0
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 0.0e+00 1419.1 986 68.5
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1414.4 983 68.5
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1410.6 983 68.3
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1409.0 986 68.0
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1409.0 859 76.1
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1406.7 984 68.3
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1406.7 984 68.3
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1405.6 983 68.5
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1402.9 863 75.8
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1400.2 983 68.3
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1398.3 988 68.2
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 0.0e+00 1394.0 986 67.8
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 0.0e+00 1349.7 1016 63.3
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1330.9 761 79.1
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 0.0e+00 1328.2 992 63.6
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1326.2 983 65.6
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1286.2 984 64.5
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1269.2 986 63.5
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1255.4 778 75.6
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1237.6 799 73.5
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1233.4 859 67.8
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 0.0e+00 1217.2 786 72.1
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1182.9 799 70.6
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 3.4e-311 1071.6 986 53.9
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 3.1e-307 1058.5 694 71.2
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 9.7e-301 1036.9 975 53.8
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 2.9e-281 972.2 707 67.0
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 8.5e-281 970.7 973 51.5
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 8.3e-268 927.5 971 48.9
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 1.7e-265 919.8 984 48.6
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 1.7e-249 866.7 574 72.0
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 5.8e-237 825.1 842 50.2
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 3.2e-203 713.0 401 79.8
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 1.1e-129 468.8 281 77.2
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 4.4e-120 436.8 415 53.0
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 7.3e-115 419.5 343 61.2
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 2.2e-111 407.9 379 56.5
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 1.2e-104 385.6 217 81.1
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 8.2e-90 336.3 192 81.2
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 2.7e-85 321.2 202 71.3
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 1.4e-81 308.9 275 56.7
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 3.7e-74 284.3 159 81.1
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 2.6e-72 278.1 211 62.6
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 1.1e-67 262.7 143 81.8
CDE05G2291 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 1.8e-65 255.4 157 72.0
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 5.5e-62 243.8 637 30.0
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 1.6e-53 215.7 372 40.1
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 2.8e-45 188.3 815 24.3
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 6.3e-42 177.2 93 82.8
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 4.5e-40 171.0 158 51.9
CAN.G22.21 Capsicum annuum HOM05D004082 ORTHO05D004729 2.1e-37 162.2 149 51.7
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 3.6e-37 161.4 92 83.7
Hund21239 Selenicereus undatus HOM05D004082 ORTHO05D004729 8.9e-36 156.8 174 48.9
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 4.4e-35 154.5 149 51.7
ATR0626G076 Amborella trichopoda HOM05D004082 ORTHO05D004729 4.0e-28 131.3 125 52.8
Lj9A80T26 Lonicera japonica HOM05D004082 ORTHO05D004729 4.0e-28 131.3 91 68.1
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 4.1e-25 121.3 183 39.3
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 4.6e-24 117.9 88 63.6
QL03p073950 Quercus lobata HOM05D004082 ORTHO05D004729 1.6e-21 109.4 129 45.7
VMungo1127G1159 Vigna mungo HOM05D004082 ORTHO05D004729 7.5e-19 100.5 181 33.7
SGA_v2.0_scaffold54G19618 Striga asiatica HOM05D004082 ORTHO05D004729 4.1e-17 94.7 121 43.8
CAN.G2092.2 Capsicum annuum HOM05D004082 ORTHO05D004729 4.6e-16 91.3 114 45.6
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 3.6e-13 81.6 79 50.6
Hma1.2p1_0928F.1_g237760 Hydrangea macrophylla HOM05D004082 ORTHO05D004729 6.8e-12 77.4 44 79.5
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 7.6e-11 73.9 71 53.5
Solyc12g038840.2 Solanum lycopersicum HOM05D004082 ORTHO05D004729 2.9e-10 72.0 73 50.7
CSS0034197 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 2.1e-08 65.9 70 48.6
SEGI_10811 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 6.6e-07 60.8 44 61.4


User provided reference genes

Program Settings