Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 0.0e+00 1129.8 568 100.0
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 3.8e-233 811.6 529 76.0
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 5.5e-232 807.7 527 76.1
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 1.6e-231 806.2 539 75.5
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 7.9e-231 803.9 493 80.1
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 7.9e-231 803.9 531 75.5
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 1.3e-228 796.6 573 70.0
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 5.3e-227 791.2 577 69.2
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 9.1e-227 790.4 504 77.2
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 9.1e-227 790.4 495 77.8
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 2.0e-226 789.3 570 69.5
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 5.0e-225 784.6 493 77.3
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 6.5e-225 784.3 494 76.5
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 3.2e-224 781.9 494 76.5
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 5.1e-222 774.6 492 77.2
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 6.7e-222 774.2 494 75.9
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 8.8e-222 773.9 534 71.5
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 8.8e-222 773.9 496 74.4
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 1.5e-221 773.1 478 78.7
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 2.0e-221 772.7 486 77.0
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 2.8e-220 768.8 505 74.7
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 2.6e-218 762.3 475 77.1
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 7.7e-218 760.8 493 76.1
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 4.2e-216 755.0 479 76.4
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 6.1e-215 751.1 489 75.5
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 8.0e-215 750.7 494 74.7
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 1.4e-214 750.0 494 73.3
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 1.4e-214 750.0 494 73.1
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 3.0e-214 748.8 495 74.3
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 2.6e-213 745.7 552 68.3
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 3.3e-213 745.3 560 66.8
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 1.3e-212 743.4 474 76.6
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 2.2e-212 742.7 560 66.8
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 3.1e-211 738.8 510 71.4
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 5.3e-211 738.0 495 72.9
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 1.6e-210 736.5 468 76.3
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.5e-210 735.3 534 69.3
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 4.5e-210 734.9 534 69.3
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 1.3e-209 733.4 588 65.1
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 3.8e-209 731.9 484 72.7
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 1.5e-208 729.9 494 70.9
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.9e-208 729.6 568 66.4
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 4.2e-208 728.4 501 72.9
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 1.2e-207 726.9 499 72.1
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 1.8e-206 723.0 474 74.9
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 3.0e-206 722.2 479 72.7
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 4.0e-206 721.8 513 70.0
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 2.0e-205 719.5 467 74.5
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 3.3e-205 718.8 515 69.1
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 7.5e-205 717.6 484 71.5
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 9.7e-205 717.2 459 77.1
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 1.3e-204 716.8 494 70.2
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 1.3e-204 716.8 466 74.5
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 2.2e-204 716.1 497 69.8
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 2.8e-204 715.7 467 75.2
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 4.8e-204 714.9 519 69.7
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 6.3e-204 714.5 493 69.6
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 1.8e-203 713.0 514 68.5
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 1.8e-203 713.0 475 73.9
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 1.8e-203 713.0 513 69.2
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 1.8e-203 713.0 467 73.4
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 7.0e-203 711.1 479 70.6
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.2e-202 710.3 513 70.2
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 1.6e-202 709.9 538 67.5
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 1.6e-202 709.9 550 67.5
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 2.7e-202 709.1 501 71.9
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 3.5e-202 708.8 474 72.8
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 7.7e-202 707.6 475 70.5
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 7.7e-202 707.6 475 70.5
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 1.7e-201 706.4 475 70.9
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 1.7e-201 706.4 479 72.2
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 2.2e-201 706.1 495 70.5
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 2.9e-201 705.7 480 68.5
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 5.0e-201 704.9 475 70.3
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 6.5e-201 704.5 492 69.3
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 1.5e-200 703.4 475 70.1
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 1.5e-200 703.4 527 67.2
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 4.2e-200 701.8 468 71.4
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 5.5e-200 701.4 479 72.7
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 1.6e-199 699.9 471 74.3
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 2.1e-199 699.5 523 67.3
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 2.7e-199 699.1 581 62.3
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 2.3e-198 696.0 526 66.7
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 6.8e-198 694.5 503 67.6
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 6.8e-198 694.5 480 71.9
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 8.8e-198 694.1 472 69.9
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 2.0e-197 693.0 597 60.3
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 2.6e-197 692.6 511 67.5
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 3.4e-197 692.2 465 72.5
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 4.4e-197 691.8 467 72.6
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 7.5e-197 691.0 534 65.7
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 7.5e-197 691.0 481 68.8
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 1.7e-196 689.9 494 68.0
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 2.2e-196 689.5 484 67.8
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 4.8e-196 688.3 518 66.4
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 1.1e-195 687.2 494 67.8
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 2.4e-195 686.0 513 68.8
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 1.6e-194 683.3 496 66.5
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 2.0e-194 682.9 462 70.8
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 2.3e-193 679.5 468 68.6
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 3.3e-192 675.6 511 65.9
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 5.5e-192 674.9 459 70.6
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 2.1e-191 672.9 468 69.0
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 2.3e-190 669.5 497 67.6
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 2.3e-190 669.5 501 66.9
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 1.7e-188 663.3 708 53.1
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 6.3e-188 661.4 468 70.1
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 1.6e-186 656.8 468 70.3
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 2.0e-186 656.4 463 68.3
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 3.8e-185 652.1 493 67.3
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 2.1e-183 646.4 477 67.7
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 4.7e-183 645.2 534 60.9
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 3.0e-177 625.9 499 64.9
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 1.6e-175 620.2 547 61.1
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 6.4e-172 608.2 366 81.4
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 2.7e-170 602.8 363 80.2
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 3.3e-168 595.9 569 57.5
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 4.6e-162 575.5 391 69.6
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 1.8e-158 563.5 497 57.9
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 2.9e-156 556.2 499 60.7
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.5e-149 533.9 575 51.8
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 2.6e-149 533.1 470 55.7
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 8.4e-148 528.1 472 53.6
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 3.5e-146 522.7 471 57.5
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 5.1e-145 518.8 362 69.3
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 1.4e-139 500.7 361 69.8
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 1.6e-138 497.3 326 74.2
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 2.1e-138 496.9 381 65.9
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 4.3e-136 489.2 342 71.1
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.2e-130 471.1 289 78.2
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 4.5e-117 426.0 376 60.9
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 3.3e-112 409.8 243 79.4
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 2.4e-110 403.7 492 46.7
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 2.7e-106 390.2 475 45.3
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 3.0e-105 386.7 281 68.0
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 2.4e-102 377.1 215 82.3
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.0e-96 357.5 292 62.7
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 2.6e-96 357.1 219 78.1
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 4.1e-94 349.7 262 66.8
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 7.0e-94 349.0 232 74.6
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 1.0e-92 345.1 216 75.0
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 1.5e-91 341.3 329 55.9
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 7.2e-91 339.0 453 42.4
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 1.7e-87 327.8 251 65.7
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 6.1e-82 309.3 195 74.4
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 3.4e-80 303.5 324 51.9
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 1.5e-75 288.1 549 34.2
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 1.0e-73 282.0 187 74.9
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 2.8e-71 273.9 263 57.8
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 7.3e-67 259.2 274 53.6
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 9.2e-62 242.3 483 34.0
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 8.9e-57 225.7 175 62.9
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 5.8e-56 223.0 114 95.6
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 1.7e-55 221.5 188 62.8
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.6e-53 214.9 147 72.8
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 4.3e-51 206.8 278 46.0
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.6e-45 188.3 125 66.4
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 6.2e-42 176.4 124 64.5
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 3.1e-41 174.1 137 64.2
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 1.4e-33 148.7 318 36.2
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 5.8e-32 143.3 314 34.1
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 9.9e-32 142.5 94 68.1
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 1.3e-31 142.1 154 50.6
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.3e-31 142.1 80 83.8
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 4.6e-29 133.7 147 51.0
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 4.6e-29 133.7 77 79.2
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 7.9e-29 132.9 88 69.3
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 1.3e-28 132.1 102 67.6
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 8.7e-28 129.4 76 80.3
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 3.3e-27 127.5 81 70.4
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 1.9e-22 111.7 84 59.5
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 3.2e-22 110.9 64 81.2
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 9.3e-22 109.4 64 76.6
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 1.8e-20 105.1 80 66.2
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 1.5e-19 102.1 83 62.7
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 1.9e-19 101.7 87 58.6
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 4.3e-19 100.5 64 65.6
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 3.1e-17 94.4 61 70.5
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 9.0e-17 92.8 72 56.9
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 1.5e-16 92.0 52 76.9
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 1.0e-12 79.3 51 66.7
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 6.7e-12 76.6 48 77.1
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 3.3e-11 74.3 164 36.6
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 8.2e-10 69.7 111 42.3
BcaC01g04986 Brassica carinata HOM05D002285 ORTHO05D004192 3.8e-07 60.8 44 59.1
C06p44380 Brassica napus HOM05D002285 ORTHO05D004192 1.4e-06 58.9 57 50.9
Nn1g08360 Nelumbo nucifera HOM05D003767 ORTHO05D004507 2.5e-06 58.2 57 54.4


User provided reference genes

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