Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 6.6e-60 233.8 114 100.0
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 8.9e-57 223.4 114 95.6
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 3.9e-52 208.0 114 85.1
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 5.0e-52 207.6 114 83.3
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 1.9e-51 205.7 114 84.2
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 3.3e-51 204.9 114 85.1
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 4.3e-51 204.5 114 83.3
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 5.6e-51 204.1 114 83.3
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 1.6e-50 202.6 114 80.7
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 2.1e-50 202.2 114 82.5
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 2.1e-50 202.2 114 83.3
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 2.8e-50 201.8 114 82.5
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 2.8e-50 201.8 113 83.2
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 3.6e-50 201.4 114 81.6
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 3.6e-50 201.4 114 81.6
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 6.2e-50 200.7 114 80.7
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 8.0e-50 200.3 114 80.7
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 1.0e-49 199.9 114 80.7
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 1.0e-49 199.9 114 80.7
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 1.0e-49 199.9 114 79.8
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 1.8e-49 199.1 114 80.7
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 2.3e-49 198.7 114 78.9
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 3.1e-49 198.4 114 80.7
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.1e-49 198.4 114 80.7
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.1e-49 198.4 114 80.7
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 3.1e-49 198.4 114 80.7
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 5.2e-49 197.6 114 78.9
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 6.8e-49 197.2 114 80.7
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 1.5e-48 196.1 114 78.9
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.5e-48 196.1 114 79.8
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 2.6e-48 195.3 114 78.9
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 2.6e-48 195.3 114 80.7
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 3.4e-48 194.9 114 79.8
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 5.8e-48 194.1 114 78.9
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 9.8e-48 193.4 114 79.8
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.3e-47 193.0 114 78.1
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.3e-47 193.0 114 78.9
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 1.3e-47 193.0 114 77.2
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 1.7e-47 192.6 114 78.1
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 2.2e-47 192.2 114 76.3
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 2.2e-47 192.2 114 78.1
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 2.9e-47 191.8 114 79.8
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 2.9e-47 191.8 114 78.1
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 4.9e-47 191.0 114 79.8
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 4.9e-47 191.0 113 77.9
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 8.3e-47 190.3 112 79.5
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 8.3e-47 190.3 114 78.1
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 1.1e-46 189.9 114 77.2
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 1.4e-46 189.5 114 75.4
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 2.4e-46 188.7 114 78.1
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 2.4e-46 188.7 114 77.2
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 2.4e-46 188.7 114 77.2
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 3.2e-46 188.3 114 78.1
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 3.2e-46 188.3 114 78.9
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 5.4e-46 187.6 114 76.3
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 9.2e-46 186.8 114 78.1
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 9.2e-46 186.8 114 78.1
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 9.2e-46 186.8 114 78.1
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 2.0e-45 185.7 114 76.3
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 2.7e-45 185.3 114 77.2
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 2.7e-45 185.3 114 76.3
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 2.7e-45 185.3 114 76.3
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 2.7e-45 185.3 114 76.3
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 2.7e-45 185.3 114 76.3
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 3.5e-45 184.9 114 77.2
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 3.5e-45 184.9 114 77.2
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 3.5e-45 184.9 114 77.2
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 3.5e-45 184.9 112 74.1
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 6.0e-45 184.1 114 75.4
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 6.0e-45 184.1 114 75.4
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 7.8e-45 183.7 114 76.3
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 7.8e-45 183.7 114 74.6
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 1.0e-44 183.3 114 74.6
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 1.3e-44 183.0 112 74.1
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 1.7e-44 182.6 114 74.6
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 1.7e-44 182.6 114 72.8
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 2.3e-44 182.2 114 73.7
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 5.0e-44 181.0 100 82.0
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 6.6e-44 180.6 114 76.3
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 6.6e-44 180.6 111 76.6
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 6.6e-44 180.6 114 76.3
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 8.6e-44 180.3 114 72.8
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 1.1e-43 179.9 114 75.4
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.1e-43 179.9 100 82.0
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 1.1e-43 179.9 114 72.8
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 1.1e-43 179.9 115 77.4
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.9e-43 179.1 114 74.6
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 2.5e-43 178.7 114 74.6
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 2.5e-43 178.7 114 75.4
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 2.5e-43 178.7 113 72.6
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 3.3e-43 178.3 114 74.6
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 9.5e-43 176.8 114 74.6
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 1.2e-42 176.4 112 75.0
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 2.1e-42 175.6 114 72.8
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 2.8e-42 175.3 114 72.8
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 2.8e-42 175.3 114 73.7
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 2.8e-42 175.3 114 72.8
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 2.8e-42 175.3 114 71.9
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 4.7e-42 174.5 114 70.2
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 4.7e-42 174.5 114 71.9
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 8.1e-42 173.7 114 74.6
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 1.4e-41 172.9 114 71.9
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 1.8e-41 172.6 114 69.3
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 2.3e-41 172.2 114 69.3
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 3.1e-41 171.8 114 70.2
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 3.1e-41 171.8 114 70.2
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 6.8e-41 170.6 114 68.4
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 8.9e-41 170.2 114 69.3
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 1.5e-40 169.5 114 70.2
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.5e-40 169.5 113 69.9
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 2.6e-40 168.7 114 69.3
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 3.4e-40 168.3 114 70.2
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 4.4e-40 167.9 114 70.2
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 5.8e-40 167.5 113 68.1
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 1.3e-39 166.4 114 64.9
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 1.7e-39 166.0 115 69.6
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 2.2e-39 165.6 114 67.5
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 3.7e-39 164.9 112 67.9
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 8.3e-39 163.7 114 64.9
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 8.3e-39 163.7 106 72.6
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.4e-38 162.9 112 62.5
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 1.4e-38 162.9 114 65.8
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 3.2e-38 161.8 114 63.2
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 3.2e-38 161.8 113 66.4
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 7.1e-38 160.6 114 63.2
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 9.2e-38 160.2 114 64.9
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 2.7e-37 158.7 114 61.4
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 3.5e-37 158.3 114 63.2
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 6.0e-37 157.5 114 63.2
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 1.0e-36 156.8 101 71.3
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 6.6e-36 154.1 114 62.3
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 1.5e-35 152.9 103 67.0
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 3.8e-31 138.3 114 58.8
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 6.4e-31 137.5 114 57.0
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 6.0e-29 131.0 112 55.4
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 6.0e-29 131.0 77 76.6
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 2.3e-28 129.0 112 57.1
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 6.6e-28 127.5 115 55.7
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 2.4e-25 119.0 70 75.7
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 4.4e-24 114.8 113 51.3
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 2.9e-23 112.1 81 64.2
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 1.4e-22 109.8 112 49.1
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 3.8e-15 85.1 114 40.4
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 2.3e-12 75.9 51 62.7
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 8.7e-12 73.9 100 43.0


User provided reference genes

Program Settings