Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H04107 Eucalyptus grandis HOM05D005298 ORTHO05D008015 0.0e+00 2054.6 1092 100.0
PGR004G2663 Punica granatum HOM05D005298 ORTHO05D008015 0.0e+00 1335.9 1081 67.1
Cfa015712 Carpinus fangiana HOM05D005298 ORTHO05D008015 0.0e+00 1310.0 1089 63.3
MD16G1139700 Malus domestica HOM05D005298 ORTHO05D008015 0.0e+00 1309.3 1102 64.3
QL06p013696 Quercus lobata HOM05D005298 ORTHO05D008015 0.0e+00 1305.0 1145 63.8
Prupe.1G109100 Prunus persica HOM05D005298 ORTHO05D008015 0.0e+00 1303.5 1094 64.5
Dinv29532 Davidia involucrata HOM05D005298 ORTHO05D008015 0.0e+00 1288.9 1089 64.2
Sabra10G0117500 Salix brachista HOM05D005298 ORTHO05D008015 0.0e+00 1278.5 1095 63.6
Thecc.04G309800 Theobroma cacao HOM05D005298 ORTHO05D008015 0.0e+00 1274.6 1092 64.4
Haze_00801 Corylus avellana HOM05D005298 ORTHO05D008015 0.0e+00 1268.8 1091 62.4
Ciclev10004217m.g Citrus clementina HOM05D005298 ORTHO05D008015 0.0e+00 1256.9 1094 63.3
CSS0017624 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 0.0e+00 1253.8 1089 62.4
Potri.010G152700 Populus trichocarpa HOM05D005298 ORTHO05D008015 0.0e+00 1248.8 1097 62.6
Atru.chr4.3122 Acer truncatum HOM05D005298 ORTHO05D008015 0.0e+00 1246.5 1089 62.8
COL.COLO4_34539 Corchorus olitorius HOM05D005298 ORTHO05D008015 0.0e+00 1245.3 1095 62.7
Gorai.005G070900 Gossypium raimondii HOM05D005298 ORTHO05D008015 0.0e+00 1241.1 1099 62.4
RcHm_v2.0_Chr4g0426661 Rosa chinensis HOM05D005298 ORTHO05D008015 0.0e+00 1238.4 1095 63.0
Gohir.D02G063000 Gossypium hirsutum HOM05D005298 ORTHO05D008015 0.0e+00 1233.8 1101 62.0
Gohir.A02G057201 Gossypium hirsutum HOM05D005298 ORTHO05D008015 0.0e+00 1231.1 1099 62.2
Manes.15G003700 Manihot esculenta HOM05D005298 ORTHO05D008015 0.0e+00 1223.0 1088 61.6
FAN17G0175 Fragaria x ananassa HOM05D005298 ORTHO05D008015 0.0e+00 1218.0 1094 61.3
Glyma.07G233500 Glycine max HOM05D005298 ORTHO05D008015 0.0e+00 1209.9 1106 59.6
FvH4_4g21110 Fragaria vesca HOM05D005298 ORTHO05D008015 0.0e+00 1206.8 1094 61.2
FAN07G1807 Fragaria x ananassa HOM05D005298 ORTHO05D008015 0.0e+00 1206.0 1110 60.5
Rhsim04G0246500 Rhododendron simsii HOM05D005298 ORTHO05D008015 0.0e+00 1201.8 1103 60.1
Glyma.17G038500 Glycine max HOM05D005298 ORTHO05D008015 0.0e+00 1201.4 1108 59.4
Psat0ss1196g0600 Pisum sativum HOM05D005298 ORTHO05D008015 0.0e+00 1196.4 1094 60.1
CiPaw.01G131300 Carya illinoinensis HOM05D005298 ORTHO05D008015 0.0e+00 1194.5 976 63.9
Lj4g0022536 Lotus japonicus HOM05D005298 ORTHO05D008015 0.0e+00 1192.2 1104 59.5
arahy.Tifrunner.gnm1.ann1.68EF5E Arachis hypogaea HOM05D005298 ORTHO05D008015 0.0e+00 1191.0 1105 59.6
Hma1.2p1_0013F.1_g008000 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 0.0e+00 1191.0 1092 60.2
TPR.G12648 Trifolium pratense HOM05D005298 ORTHO05D008015 0.0e+00 1190.6 1103 60.0
Aqoxy2G02567 Aquilegia oxysepala HOM05D005298 ORTHO05D008015 0.0e+00 1186.4 1093 59.7
Phvul.003G119400 Phaseolus vulgaris HOM05D005298 ORTHO05D008015 0.0e+00 1186.0 1106 58.1
VMungo1215G2609 Vigna mungo HOM05D005298 ORTHO05D008015 0.0e+00 1181.4 1109 58.4
MBI18_g28901_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 0.0e+00 1177.9 1087 60.1
TAR362G0426 Trochodendron aralioides HOM05D005298 ORTHO05D008015 0.0e+00 1173.7 1061 61.8
Lj3A839G57 Lonicera japonica HOM05D005298 ORTHO05D008015 0.0e+00 1172.1 1076 58.6
Lalb_Chr07g0181831 Lupinus albus HOM05D005298 ORTHO05D008015 0.0e+00 1171.0 1101 58.7
arahy.Tifrunner.gnm1.ann1.WSVI3W Arachis hypogaea HOM05D005298 ORTHO05D008015 0.0e+00 1157.1 1107 58.5
CsaV3_6G000130 Cucumis sativus L. HOM05D005298 ORTHO05D008015 0.0e+00 1153.7 1098 58.0
Sed0008409 Sechium edule HOM05D005298 ORTHO05D008015 0.0e+00 1152.9 1097 58.4
Ca_21388_v3 Cicer arietinum L. HOM05D005298 ORTHO05D008015 0.0e+00 1152.1 1063 59.3
Oeu020287.1 Olea europaea HOM05D005298 ORTHO05D008015 0.0e+00 1148.3 1086 58.0
EL10Ac3g06277 Beta vulgaris HOM05D005298 ORTHO05D008015 0.0e+00 1141.3 1086 56.7
CANSAT78G1118 Cannabis sativa HOM05D005298 ORTHO05D008015 0.0e+00 1137.1 1101 58.9
Sopen01g022220 Solanum pennellii HOM05D005298 ORTHO05D008015 0.0e+00 1115.5 1086 58.1
Solyc01g057520.4 Solanum lycopersicum HOM05D005298 ORTHO05D008015 0.0e+00 1112.4 1086 58.0
Actinidia18497 Actinidia chinensis HOM05D005298 ORTHO05D008015 0.0e+00 1110.9 1090 57.3
Nitab4.5_0000169g0140 Nicotiana tabacum HOM05D005298 ORTHO05D008015 0.0e+00 1102.0 1087 58.6
Peaxi162Scf00126g10123 Petunia axillaris HOM05D005298 ORTHO05D008015 0.0e+00 1097.4 1087 57.8
PSO210G1072 Papaver somniferum HOM05D005298 ORTHO05D008015 0.0e+00 1096.3 1091 57.3
Ah.07g203800 Amaranthus hybridus HOM05D005298 ORTHO05D008015 0.0e+00 1087.8 1084 55.5
Nitab4.5_0000992g0090 Nicotiana tabacum HOM05D005298 ORTHO05D008015 0.0e+00 1083.2 1107 56.6
DCAR_002539 Daucus carota HOM05D005298 ORTHO05D008015 0.0e+00 1082.8 1078 57.7
Thhalv10019950m.g Eutrema salsugineum HOM05D005298 ORTHO05D008015 0.0e+00 1082.4 1086 55.6
ClCG06G004280 Citrullus lanatus HOM05D005298 ORTHO05D008015 0.0e+00 1082.0 1198 51.9
ECA233G2380 Erigeron canadensis HOM05D005298 ORTHO05D008015 3.0e-311 1072.0 1098 56.2
C05p49050 Brassica napus HOM05D005298 ORTHO05D008015 9.6e-310 1067.0 1091 55.6
Sp3g15510 Schrenkiella parvula HOM05D005298 ORTHO05D008015 4.8e-309 1064.7 1086 54.3
CAN.G14.34 Capsicum annuum HOM05D005298 ORTHO05D008015 1.8e-308 1062.8 1011 56.9
AT3G17340 Arabidopsis thaliana HOM05D005298 ORTHO05D008015 1.0e-306 1057.0 1091 54.3
BolC5t33645H Brassica oleracea HOM05D005298 ORTHO05D008015 1.3e-306 1056.6 1096 55.3
Duzib151G1192 Durio zibethinus HOM05D005298 ORTHO05D008015 3.2e-305 1052.0 1098 56.4
TWI09G0537 Tripterygium wilfordii HOM05D005298 ORTHO05D008015 1.0e-303 1047.0 1088 55.9
BcaC05g28796 Brassica carinata HOM05D005298 ORTHO05D008015 3.9e-303 1045.0 1070 55.6
AL3G30390 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 6.7e-303 1044.3 1092 54.3
Aa31LG8G4260 Aethionema arabicum HOM05D005298 ORTHO05D008015 2.5e-302 1042.3 1120 53.6
BraA05t22069Z Brassica rapa HOM05D005298 ORTHO05D008015 2.5e-294 1015.8 1090 53.8
A05p32420 Brassica napus HOM05D005298 ORTHO05D008015 2.2e-293 1012.7 1090 53.5
Lsat_1_v5_gn_6_69380 Lactuca sativa HOM05D005298 ORTHO05D008015 2.2e-293 1012.7 1034 55.5
Carub.0003s1705 Capsella rubella HOM05D005298 ORTHO05D008015 7.7e-291 1004.2 1093 53.3
Nn3g21868 Nelumbo nucifera HOM05D005298 ORTHO05D008015 1.6e-288 996.5 1091 53.0
ATR0796G315 Amborella trichopoda HOM05D005298 ORTHO05D008015 2.1e-288 996.1 1086 51.3
Cpa.g.sc146.46 Carica papaya HOM05D005298 ORTHO05D008015 6.1e-288 994.6 1089 54.6
MELO3C021240.2 Cucumis melo HOM05D005298 ORTHO05D008015 7.9e-288 994.2 1116 53.2
Zm00001eb164790 Zea mays HOM05D005298 ORTHO05D008015 1.5e-286 989.9 1094 52.3
vmacro07993 Vaccinium macrocarpon HOM05D005298 ORTHO05D008015 7.4e-286 987.6 1174 50.7
AUR62029998 Chenopodium quinoa HOM05D005298 ORTHO05D008015 5.5e-281 971.5 1082 49.7
Os11g0695900 Oryza sativa ssp. japonica HOM05D005298 ORTHO05D008015 5.7e-278 961.4 1101 50.7
HanXRQChr09g0251541 Helianthus annuus HOM05D005298 ORTHO05D008015 1.6e-264 916.8 1087 51.3
GSVIVG01017664001 Vitis vinifera HOM05D005298 ORTHO05D008015 2.3e-247 859.8 1109 49.1
Mapoly0002s0222 Marchantia polymorpha HOM05D005298 ORTHO05D008015 3.8e-221 772.7 1128 43.7
Pp3c21_7100 Physcomitrium patens HOM05D005298 ORTHO05D008015 2.4e-215 753.4 1107 42.0
Pp3c21_7106 Physcomitrium patens HOM05D005298 ORTHO05D008015 2.4e-215 753.4 1107 42.0
CARHR092660 Cardamine hirsuta HOM05D005298 ORTHO05D008015 7.6e-214 748.4 646 59.6
CSS0004853 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 1.3e-210 737.6 721 55.3
GSVIVG01034907001 Vitis vinifera HOM05D005298 ORTHO05D008015 5.8e-206 722.2 601 61.4
Pp3c27_6680 Physcomitrium patens HOM05D005298 ORTHO05D008015 5.8e-198 695.7 1142 39.7
Pp3c1_32943 Physcomitrium patens HOM05D005298 ORTHO05D008015 3.7e-176 623.2 1066 36.3
SMO200G0212 Selaginella moellendorffii HOM05D005298 ORTHO05D008015 6.3e-176 622.5 985 37.3
MD15G1386700 Malus domestica HOM05D005298 ORTHO05D008015 5.5e-172 609.4 501 61.3
Medtr4g123670 Medicago truncatula HOM05D005298 ORTHO05D008015 1.1e-169 601.7 624 55.1
Medtr4g123690 Medicago truncatula HOM05D005298 ORTHO05D008015 1.4e-146 525.0 465 60.4
GSVIVG01017599001 Vitis vinifera HOM05D005298 ORTHO05D008015 4.4e-129 466.8 429 54.8
Mapoly0011s0083 Marchantia polymorpha HOM05D005298 ORTHO05D008015 1.9e-108 398.3 823 30.1
SEGI_25654 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 1.7e-104 385.2 468 45.1
PGSC0003DMG400012034 Solanum tuberosum HOM05D005298 ORTHO05D008015 7.3e-100 369.8 431 55.5
CARHR092650 Cardamine hirsuta HOM05D005298 ORTHO05D008015 1.3e-88 332.4 438 51.4
AUR62002576 Chenopodium quinoa HOM05D005298 ORTHO05D008015 1.5e-81 308.9 364 50.8
Cc03_g00330 Coffea canephora HOM05D005298 ORTHO05D008015 1.3e-80 305.8 413 47.0
Zm00001eb304680 Zea mays HOM05D005298 ORTHO05D008015 5.7e-76 290.4 289 54.0
FvH4_4g20840 Fragaria vesca HOM05D005298 ORTHO05D008015 1.3e-75 289.3 352 48.9
Pp3c1_32940 Physcomitrium patens HOM05D005298 ORTHO05D008015 1.9e-71 275.4 458 36.7
PRCOL_00002040 Prasinoderma coloniale HOM05D005298 ORTHO05D008015 1.9e-71 275.4 812 26.8
CSS0040584 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 5.9e-65 253.8 219 59.8
MCO02G049 Micromonas commoda HOM05D005298 ORTHO05D008015 2.9e-64 251.5 923 27.7
CDE09G0452 Ceratophyllum demersum HOM05D005298 ORTHO05D008015 4.2e-55 221.1 657 28.2
Zm00001eb026980 Zea mays HOM05D005298 ORTHO05D008015 7.2e-47 193.7 155 60.0
TPR.G8357 Trifolium pratense HOM05D005298 ORTHO05D008015 2.2e-35 155.6 250 40.8
TPR.G15154 Trifolium pratense HOM05D005298 ORTHO05D008015 1.2e-33 149.8 185 49.7
GSVIVG01017598001 Vitis vinifera HOM05D005298 ORTHO05D008015 7.7e-33 147.1 87 78.2
SEGI_08042 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 2.1e-30 139.0 143 51.7
AL3G29490 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 3.4e-28 131.7 159 44.7
TPR.G35281 Trifolium pratense HOM05D005298 ORTHO05D008015 7.8e-25 120.6 138 50.0
Hma1.2p1_0079F.1_g041380 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 1.3e-24 119.8 91 59.3
SEGI_33872 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 6.6e-24 117.5 122 48.4
Zm00001eb026970 Zea mays HOM05D005298 ORTHO05D008015 8.6e-24 117.1 113 52.2
ATR0757G088 Amborella trichopoda HOM05D005298 ORTHO05D023441 1.1e-23 116.7 117 50.4
CSS0028497 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D026321 1.1e-23 116.7 154 63.0
BcaB06g25819 Brassica carinata HOM05D005298 ORTHO05D008015 1.6e-22 112.8 209 51.7
SEGI_24323 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 6.1e-22 110.9 107 53.3
TPR.G40673 Trifolium pratense HOM05D005298 ORTHO05D037798 1.0e-21 110.2 112 54.5
MBI05_g29537_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 2.2e-19 102.4 127 48.8
GSVIVG01017600001 Vitis vinifera HOM05D005298 ORTHO05D008015 9.2e-18 97.1 101 52.5
ATR0457G001 Amborella trichopoda HOM05D005298 ORTHO05D023441 3.5e-17 95.1 114 46.5
Zm00001eb082350 Zea mays HOM05D005298 ORTHO05D008015 4.6e-17 94.7 85 56.5
Zm00001eb187550 Zea mays HOM05D005298 ORTHO05D008015 4.6e-17 94.7 85 56.5
Zm00001eb183920 Zea mays HOM05D005298 ORTHO05D030733 7.8e-17 94.0 125 40.8
Zm00001eb385420 Zea mays HOM05D005298 ORTHO05D030733 1.2e-14 86.7 125 38.4
Os11g0693900 Oryza sativa ssp. japonica HOM05D005298 ORTHO05D026321 1.6e-14 86.3 189 46.0
ATR0605G314 Amborella trichopoda HOM05D005298 ORTHO05D023441 5.2e-13 81.3 98 45.9
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 5.4e-10 71.2 61 59.0
Aa31LG5G5320 Aethionema arabicum HOM05D002786 ORTHO05D003493 7.0e-10 70.9 641 21.8
AT3G59020 Arabidopsis thaliana HOM05D002786 ORTHO05D003493 2.0e-09 69.3 619 21.8
Os04g0337201 Oryza sativa ssp. japonica HOM05D002786 ORTHO05D003493 4.6e-09 68.2 643 20.8
BcaC08g44950 Brassica carinata HOM05D002786 ORTHO05D003493 1.3e-08 66.6 643 21.2
C06p25840 Brassica napus HOM05D002786 ORTHO05D003493 1.3e-08 66.6 643 21.2
BolC6t37745H Brassica oleracea HOM05D002786 ORTHO05D003493 1.3e-08 66.6 643 21.2
A07p24410 Brassica napus HOM05D002786 ORTHO05D003493 2.3e-08 65.9 643 21.2
BraA07t30088Z Brassica rapa HOM05D002786 ORTHO05D003493 2.3e-08 65.9 643 21.2
TPR.G21809 Trifolium pratense HOM05D005298 ORTHO05D037798 3.0e-08 65.5 50 62.0
AL5G40900 Arabidopsis lyrata HOM05D002786 ORTHO05D003493 5.0e-08 64.7 623 21.3
Thhalv10005763m.g Eutrema salsugineum HOM05D002786 ORTHO05D003493 6.6e-08 64.3 616 21.4
BcaB02g07490 Brassica carinata HOM05D002786 ORTHO05D003493 8.6e-08 63.9 640 20.8
Carub.0005s2578 Capsella rubella HOM05D002786 ORTHO05D003493 1.1e-07 63.5 623 20.9
CDE09G0536 Ceratophyllum demersum HOM05D005298 ORTHO05D043882 1.1e-07 63.5 80 46.2
Aa31LG10G13510 Aethionema arabicum HOM05D002786 ORTHO05D003493 1.9e-07 62.8 623 21.5
BcaB02g08232 Brassica carinata HOM05D002786 ORTHO05D003493 2.5e-07 62.4 640 20.6
Sp5g03960 Schrenkiella parvula HOM05D002786 ORTHO05D003493 4.3e-07 61.6 641 19.7
TPR.G13833 Trifolium pratense HOM05D005298 ORTHO05D037798 4.3e-07 61.6 52 53.8
Migut.N00442 Erythranthe guttata HOM05D002786 ORTHO05D003493 5.6e-07 61.2 624 22.0
ATR0049G027 Amborella trichopoda HOM05D005298 ORTHO05D023441 7.3e-07 60.8 66 51.5
A04p02290 Brassica napus HOM05D002786 ORTHO05D003493 2.1e-06 59.3 640 20.3
BraA04t15960Z Brassica rapa HOM05D002786 ORTHO05D003493 2.1e-06 59.3 640 20.3
unitig_21.g20552 Utricularia gibba HOM05D002786 ORTHO05D003493 3.6e-06 58.5 618 21.0
BcaC02g10037 Brassica carinata HOM05D002786 ORTHO05D003493 8.1e-06 57.4 640 20.3
C04p33640 Brassica napus HOM05D002786 ORTHO05D003493 8.1e-06 57.4 640 20.3


User provided reference genes

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