Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H04056 Eucalyptus grandis HOM05D006035 ORTHO05D007155 1.1e-89 333.6 198 100.0
Cfa015301 Carpinus fangiana HOM05D006035 ORTHO05D007155 4.6e-45 185.3 194 53.1
Thecc.04G302600 Theobroma cacao HOM05D006035 ORTHO05D007155 1.4e-44 183.7 199 53.8
COL.COLO4_34598 Corchorus olitorius HOM05D006035 ORTHO05D007155 7.4e-43 177.9 196 51.5
Haze_01313 Corylus avellana HOM05D006035 ORTHO05D007155 1.3e-42 177.2 193 52.3
Duzib151G0686 Durio zibethinus HOM05D006035 ORTHO05D007155 1.3e-42 177.2 198 51.0
PGR004G1138 Punica granatum HOM05D006035 ORTHO05D007155 1.8e-41 173.3 193 52.3
RcHm_v2.0_Chr4g0425671 Rosa chinensis HOM05D006035 ORTHO05D007155 2.4e-41 172.9 196 51.0
Duzib212G0974 Durio zibethinus HOM05D006035 ORTHO05D007155 3.1e-41 172.6 198 49.5
Gohir.A09G234100 Gossypium hirsutum HOM05D006035 ORTHO05D007155 6.9e-41 171.4 199 50.8
CiPaw.01G137000 Carya illinoinensis HOM05D006035 ORTHO05D007155 9.1e-41 171.0 195 52.8
Gohir.A10G173200 Gossypium hirsutum HOM05D006035 ORTHO05D007155 9.1e-41 171.0 195 49.7
Gorai.006G257800 Gossypium raimondii HOM05D006035 ORTHO05D007155 9.1e-41 171.0 199 50.3
Sabra10G0113300 Salix brachista HOM05D006035 ORTHO05D007155 9.1e-41 171.0 199 49.7
QL06p012626 Quercus lobata HOM05D006035 ORTHO05D007155 1.2e-40 170.6 193 50.3
Gohir.D09G234900 Gossypium hirsutum HOM05D006035 ORTHO05D007155 2.0e-40 169.9 199 50.3
Sabra08G0078500 Salix brachista HOM05D006035 ORTHO05D007155 2.0e-40 169.9 198 49.5
Gohir.D10G179700 Gossypium hirsutum HOM05D006035 ORTHO05D007155 5.9e-40 168.3 196 50.0
MD13G1151300 Malus domestica HOM05D006035 ORTHO05D007155 5.9e-40 168.3 198 49.5
Potri.008G103900 Populus trichocarpa HOM05D006035 ORTHO05D007155 5.9e-40 168.3 199 47.2
SGA_v2.0_scaffold64G22102 Striga asiatica HOM05D006035 ORTHO05D007155 1.3e-39 167.2 193 47.2
Ciclev10006076m.g Citrus clementina HOM05D006035 ORTHO05D007155 1.7e-39 166.8 193 50.8
Gorai.011G201000 Gossypium raimondii HOM05D006035 ORTHO05D007155 2.2e-39 166.4 196 49.5
Potri.010G146900 Populus trichocarpa HOM05D006035 ORTHO05D007155 2.2e-39 166.4 199 49.7
Medtr4g122260 Medicago truncatula HOM05D006035 ORTHO05D007155 2.9e-39 166.0 193 48.7
THA.LOC104818878 Tarenaya hassleriana HOM05D006035 ORTHO05D007155 6.5e-39 164.9 188 51.6
A09p04840 Brassica napus HOM05D006035 ORTHO05D007155 1.4e-38 163.7 191 49.7
FvH4_4g19970 Fragaria vesca HOM05D006035 ORTHO05D007155 1.4e-38 163.7 192 49.0
Phvul.003G115800 Phaseolus vulgaris HOM05D006035 ORTHO05D007155 1.4e-38 163.7 192 48.4
BcaC04g23738 Brassica carinata HOM05D006035 ORTHO05D007155 1.9e-38 163.3 191 49.7
C09p05220 Brassica napus HOM05D006035 ORTHO05D007155 1.9e-38 163.3 191 49.7
BolC9t53448H Brassica oleracea HOM05D006035 ORTHO05D007155 2.5e-38 162.9 191 49.7
vmacro08029 Vaccinium macrocarpon HOM05D006035 ORTHO05D007155 2.5e-38 162.9 194 47.9
Ca_21435_v3 Cicer arietinum L. HOM05D006035 ORTHO05D007155 3.2e-38 162.5 192 48.4
Rhsim04G0240200 Rhododendron simsii HOM05D006035 ORTHO05D007155 3.2e-38 162.5 194 46.9
TPR.G25406 Trifolium pratense HOM05D006035 ORTHO05D007155 4.2e-38 162.2 192 46.9
VMungo1215G2980 Vigna mungo HOM05D006035 ORTHO05D007155 4.2e-38 162.2 192 48.4
Atru.chr4.3040 Acer truncatum HOM05D006035 ORTHO05D007155 5.5e-38 161.8 194 47.9
BcaB04g19614 Brassica carinata HOM05D006035 ORTHO05D007155 5.5e-38 161.8 188 48.9
Sp2g19800 Schrenkiella parvula HOM05D006035 ORTHO05D007155 5.5e-38 161.8 188 49.5
SpUn0021_0050 Schrenkiella parvula HOM05D006035 ORTHO05D007155 5.5e-38 161.8 188 49.5
MD16G1152300 Malus domestica HOM05D006035 ORTHO05D007155 7.2e-38 161.4 198 48.0
BraA09t36121Z Brassica rapa HOM05D006035 ORTHO05D007155 1.6e-37 160.2 191 48.7
SalBow8G4845 Salvia bowleyana HOM05D006035 ORTHO05D007155 1.6e-37 160.2 191 47.6
Glyma.17G034900 Glycine max HOM05D006035 ORTHO05D007155 2.1e-37 159.8 192 48.4
Glyma.07G238700 Glycine max HOM05D006035 ORTHO05D007155 2.7e-37 159.5 180 47.8
Lalb_Chr13g0298531 Lupinus albus HOM05D006035 ORTHO05D007155 3.6e-37 159.1 197 47.2
Oeu038775.1 Olea europaea HOM05D006035 ORTHO05D007155 3.6e-37 159.1 192 45.8
Nitab4.5_0000931g0030 Nicotiana tabacum HOM05D006035 ORTHO05D007155 4.7e-37 158.7 192 45.8
Oeu038777.1 Olea europaea HOM05D006035 ORTHO05D007155 4.7e-37 158.7 191 46.1
CARHR182020 Cardamine hirsuta HOM05D006035 ORTHO05D007155 7.9e-37 157.9 188 48.9
CSS0043064 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 1.0e-36 157.5 191 47.1
Sed0018605 Sechium edule HOM05D006035 ORTHO05D007155 1.0e-36 157.5 195 47.2
Psat0s4013g0040 Pisum sativum HOM05D006035 ORTHO05D007155 1.4e-36 157.1 192 49.0
ClCG05G006630 Citrullus lanatus HOM05D006035 ORTHO05D007155 2.3e-36 156.4 193 47.7
MELO3C006721.2 Cucumis melo HOM05D006035 ORTHO05D007155 3.0e-36 156.0 193 47.2
CAN.G97.9 Capsicum annuum HOM05D006035 ORTHO05D007155 5.1e-36 155.2 195 44.1
TAR633G1133 Trochodendron aralioides HOM05D006035 ORTHO05D007155 8.8e-36 154.5 192 46.9
Aa31LG11G8120 Aethionema arabicum HOM05D006035 ORTHO05D007155 2.0e-35 153.3 188 45.7
CANSAT78G2193 Cannabis sativa HOM05D006035 ORTHO05D007155 2.0e-35 153.3 196 48.0
TWI09G1568 Tripterygium wilfordii HOM05D006035 ORTHO05D007155 2.6e-35 152.9 193 44.6
Phvul.005G129600 Phaseolus vulgaris HOM05D006035 ORTHO05D007155 5.7e-35 151.8 192 44.3
CSS0012943 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 7.4e-35 151.4 181 47.0
CsaV3_3G015240 Cucumis sativus L. HOM05D006035 ORTHO05D007155 7.4e-35 151.4 194 47.4
Lj1g0017970 Lotus japonicus HOM05D006035 ORTHO05D007155 9.7e-35 151.0 199 45.7
TWI53G1140 Tripterygium wilfordii HOM05D006035 ORTHO05D007155 9.7e-35 151.0 194 45.4
Sopen01g024580 Solanum pennellii HOM05D006035 ORTHO05D007155 1.3e-34 150.6 195 43.1
AL8G23240 Arabidopsis lyrata HOM05D006035 ORTHO05D007155 1.7e-34 150.2 196 46.9
Migut.G00072 Erythranthe guttata HOM05D006035 ORTHO05D007155 1.7e-34 150.2 197 44.2
AT5G49480 Arabidopsis thaliana HOM05D006035 ORTHO05D007155 2.2e-34 149.8 195 46.2
Lalb_Chr07g0182041 Lupinus albus HOM05D006035 ORTHO05D007155 2.2e-34 149.8 195 45.6
Nitab4.5_0000655g0030 Nicotiana tabacum HOM05D006035 ORTHO05D007155 2.2e-34 149.8 188 45.7
CSS0047932 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 3.7e-34 149.1 181 46.4
PSO761G0247 Papaver somniferum HOM05D006035 ORTHO05D007155 3.7e-34 149.1 192 43.8
Cc03_g00700 Coffea canephora HOM05D006035 ORTHO05D007155 4.8e-34 148.7 194 50.5
Nn3g21749 Nelumbo nucifera HOM05D006035 ORTHO05D007155 4.8e-34 148.7 200 46.0
PGSC0003DMG400001204 Solanum tuberosum HOM05D006035 ORTHO05D007155 4.8e-34 148.7 192 41.7
PSO210G7669 Papaver somniferum HOM05D006035 ORTHO05D007155 6.3e-34 148.3 192 44.8
DCAR_030462 Daucus carota HOM05D006035 ORTHO05D007155 1.1e-33 147.5 192 43.2
Dinv44276 Davidia involucrata HOM05D006035 ORTHO05D007155 1.4e-33 147.1 191 43.5
Oeu042670.1 Olea europaea HOM05D006035 ORTHO05D007155 3.1e-33 146.0 194 44.3
EL10Ac3g05523 Beta vulgaris HOM05D006035 ORTHO05D007155 4.1e-33 145.6 198 42.4
Rhsim02G0003100 Rhododendron simsii HOM05D006035 ORTHO05D007155 4.1e-33 145.6 193 46.1
PGR031G3428 Punica granatum HOM05D006035 ORTHO05D007155 5.3e-33 145.2 194 45.4
CSS0034436 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 1.2e-32 144.1 185 45.4
Hma1.2p1_0013F.1_g008420 Hydrangea macrophylla HOM05D006035 ORTHO05D007155 1.2e-32 144.1 173 48.6
vmacro15178 Vaccinium macrocarpon HOM05D006035 ORTHO05D007155 1.6e-32 143.7 193 44.0
Duzib052G0321 Durio zibethinus HOM05D006035 ORTHO05D007155 4.5e-32 142.1 193 43.0
HPP92_008930 Vanilla planifolia HOM05D006035 ORTHO05D007155 1.3e-31 140.6 200 41.0
Actinidia31554 Actinidia chinensis HOM05D006035 ORTHO05D007155 1.7e-31 140.2 196 44.4
unitig_32.g11850 Utricularia gibba HOM05D006035 ORTHO05D007155 2.9e-31 139.4 194 41.8
Peaxi162Scf00228g00041 Petunia axillaris HOM05D006035 ORTHO05D007155 3.8e-31 139.0 169 45.0
Ah.13g071330 Amaranthus hybridus HOM05D006035 ORTHO05D007155 8.5e-31 137.9 206 38.8
Aqoxy2G02699 Aquilegia oxysepala HOM05D006035 ORTHO05D007155 8.5e-31 137.9 192 40.1
Manes.03G205900 Manihot esculenta HOM05D006035 ORTHO05D007155 1.9e-30 136.7 173 44.5
Solyc01g058720.4 Solanum lycopersicum HOM05D006035 ORTHO05D007155 2.5e-30 136.3 175 44.6
AUR62039264 Chenopodium quinoa HOM05D006035 ORTHO05D007155 7.2e-30 134.8 173 43.9
HanXRQChr11g0353881 Helianthus annuus HOM05D006035 ORTHO05D007155 1.4e-28 130.6 192 39.1
ECA246G4755 Erigeron canadensis HOM05D006035 ORTHO05D007155 2.3e-28 129.8 174 43.1
Lsat_1_v5_gn_1_41620 Lactuca sativa HOM05D006035 ORTHO05D007155 4.0e-28 129.0 194 40.2
Lsat_1_v5_gn_6_116560 Lactuca sativa HOM05D006035 ORTHO05D007155 1.1e-27 127.5 192 39.6
Sc19g0003080 Simmondsia chinensis HOM05D006035 ORTHO05D007155 1.1e-27 127.5 193 37.8
HanXRQChr05g0146001 Helianthus annuus HOM05D006035 ORTHO05D007155 2.0e-27 126.7 194 39.7
Lsat_1_v5_gn_6_116540 Lactuca sativa HOM05D006035 ORTHO05D007155 7.5e-27 124.8 194 40.2
AUR62016225 Chenopodium quinoa HOM05D006035 ORTHO05D007155 2.2e-26 123.2 177 42.4
ATR0693G356 Amborella trichopoda HOM05D006035 ORTHO05D007155 5.9e-24 115.2 192 38.5
FAN07G1803 Fragaria x ananassa HOM05D006035 ORTHO05D007155 5.9e-24 115.2 197 45.7
MSTRG.10157 Avicennia marina HOM05D006035 ORTHO05D007155 5.0e-23 112.1 191 37.2
MD04G1036600 Malus domestica HOM05D006035 ORTHO05D007155 3.6e-21 105.9 123 45.5
Oeu038773.1 Olea europaea HOM05D006035 ORTHO05D007155 5.2e-20 102.1 224 34.4
HPP92_005426 Vanilla planifolia HOM05D006035 ORTHO05D007155 5.2e-20 102.1 179 34.1
Lj6P692T31 Lonicera japonica HOM05D006035 ORTHO05D007155 1.2e-19 100.9 122 44.3
Cpa.g.sc9.45 Carica papaya HOM05D006035 ORTHO05D007155 1.1e-17 94.4 192 42.2
CDE08G1648 Ceratophyllum demersum HOM05D006035 ORTHO05D007155 1.1e-17 94.4 158 38.6
Zm00001eb395970 Zea mays HOM05D006035 ORTHO05D007155 1.8e-17 93.6 158 38.0
Manes.15G000900 Manihot esculenta HOM05D006035 ORTHO05D007155 4.1e-17 92.4 192 39.1
GSVIVG01034916001 Vitis vinifera HOM05D006035 ORTHO05D007155 7.0e-17 91.7 66 63.6
CSS0018156 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 1.9e-14 83.6 192 40.1
SEGI_03909 Sequoiadendron giganteum HOM05D006035 ORTHO05D007155 1.6e-13 80.5 175 30.3
Os03g0310800 Oryza sativa ssp. japonica HOM05D006035 ORTHO05D007155 2.1e-13 80.1 109 46.8
Ciclev10006337m.g Citrus clementina HOM05D006035 ORTHO05D007155 5.2e-12 75.5 53 69.8
SEGI_01581 Sequoiadendron giganteum HOM05D006035 ORTHO05D007155 1.5e-11 73.9 184 27.7
TAR362G0119 Trochodendron aralioides HOM05D006035 ORTHO05D007155 7.5e-11 71.6 192 37.5
SEGI_08802 Sequoiadendron giganteum HOM05D006035 ORTHO05D007155 2.2e-10 70.1 198 25.8
Oeu038774.1 Olea europaea HOM05D006035 ORTHO05D007155 2.4e-09 66.6 191 29.3
Prupe.1G115600 Prunus persica HOM05D006035 ORTHO05D007155 1.2e-08 64.3 78 48.7
Carub.0008s0934 Capsella rubella HOM05D006035 ORTHO05D007155 1.0e-07 61.2 194 35.6
CBR_g28479 Chara braunii HOM05D000227 ORTHO05D007155 5.0e-07 58.9 177 26.6
CBR_g28477 Chara braunii HOM05D000227 ORTHO05D000451 1.5e-06 57.4 177 26.6
Pp3c25_6260 Physcomitrium patens HOM05D000135 ORTHO05D000203 5.6e-06 55.5 163 28.8
Pp3c25_1480 Physcomitrium patens HOM05D000227 ORTHO05D007155 7.3e-06 55.1 175 23.4
FAN22G2044 Fragaria x ananassa HOM05D000135 ORTHO05D000203 9.5e-06 54.7 169 29.0
Pp3c16_2040 Physcomitrium patens HOM05D006035 ORTHO05D007155 9.5e-06 54.7 177 24.3


User provided reference genes

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