Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H03560 Eucalyptus grandis HOM05D006587 ORTHO05D008487 6.3e-189 664.1 368 100.0
GSVIVG01017920001 Vitis vinifera HOM05D006587 ORTHO05D008487 2.7e-139 499.2 365 70.7
PGR004G2885 Punica granatum HOM05D006587 ORTHO05D008487 5.1e-138 495.0 365 72.6
Prupe.1G154500 Prunus persica HOM05D006587 ORTHO05D008487 1.6e-136 490.0 303 78.2
Hma1.2p1_0511F.1_g168960 Hydrangea macrophylla HOM05D006587 ORTHO05D008487 3.1e-135 485.7 307 76.9
Manes.03G181700 Manihot esculenta HOM05D006587 ORTHO05D008487 4.5e-134 481.9 307 77.9
Cfa015608 Carpinus fangiana HOM05D006587 ORTHO05D006035 1.7e-133 479.9 307 77.2
MD13G1186800 Malus domestica HOM05D006587 ORTHO05D008487 2.9e-133 479.2 304 77.0
Atru.chr4.2522 Acer truncatum HOM05D006587 ORTHO05D008487 3.8e-133 478.8 362 69.9
Potri.008G149800 Populus trichocarpa HOM05D006587 ORTHO05D008487 2.4e-132 476.1 313 74.8
CANSAT78G1956 Cannabis sativa HOM05D006587 ORTHO05D008487 1.6e-131 473.4 307 75.9
Thecc.04G226500 Theobroma cacao HOM05D006587 ORTHO05D008487 1.6e-131 473.4 309 75.7
MD16G1187700 Malus domestica HOM05D006587 ORTHO05D008487 6.0e-131 471.5 359 67.1
CSS0008441 Camellia sinensis var. sinensis HOM05D006587 ORTHO05D008487 7.9e-131 471.1 309 75.1
FAN12G2172 Fragaria x ananassa HOM05D006587 ORTHO05D006391 1.3e-130 470.3 304 76.0
FAN07G2036 Fragaria x ananassa HOM05D006587 ORTHO05D008487 1.8e-130 469.9 363 67.2
Actinidia23494 Actinidia chinensis HOM05D006587 ORTHO05D008487 2.3e-130 469.5 304 76.3
Rhsim04G0204300 Rhododendron simsii HOM05D006587 ORTHO05D008487 2.3e-130 469.5 305 75.4
TAR362G0294 Trochodendron aralioides HOM05D006587 ORTHO05D008487 5.1e-130 468.4 304 75.7
CiPaw.02G094600 Carya illinoinensis HOM05D006587 ORTHO05D008487 1.5e-129 466.8 367 66.2
TWI73G1280 Tripterygium wilfordii HOM05D006587 ORTHO05D008487 1.3e-128 463.8 303 75.6
ECA236G2554 Erigeron canadensis HOM05D006587 ORTHO05D008487 4.8e-128 461.8 304 74.3
Gohir.A01G023600 Gossypium hirsutum HOM05D006587 ORTHO05D008487 4.8e-128 461.8 308 72.1
Gorai.002G024100 Gossypium raimondii HOM05D006587 ORTHO05D008487 4.8e-128 461.8 304 73.4
RcHm_v2.0_Chr4g0417131 Rosa chinensis HOM05D006587 ORTHO05D008487 8.2e-128 461.1 362 68.2
Sc19g0004360 Simmondsia chinensis HOM05D006587 ORTHO05D008487 1.1e-127 460.7 368 67.4
Actinidia40165 Actinidia chinensis HOM05D006587 ORTHO05D008487 1.4e-127 460.3 300 76.0
THA.LOC104818820 Tarenaya hassleriana HOM05D006587 ORTHO05D008487 3.1e-127 459.1 306 72.5
Nitab4.5_0000144g0120 Nicotiana tabacum HOM05D006587 ORTHO05D008487 5.3e-127 458.4 371 66.8
Gohir.D01G021600 Gossypium hirsutum HOM05D006587 ORTHO05D008487 6.9e-127 458.0 304 72.4
Cc03_g03390 Coffea canephora HOM05D006587 ORTHO05D008487 9.0e-127 457.6 307 73.3
ClCG05G005300 Citrullus lanatus HOM05D006587 ORTHO05D008487 1.2e-126 457.2 306 75.5
BcaB08g36587 Brassica carinata HOM05D006587 ORTHO05D008487 4.5e-126 455.3 308 73.4
MELO3C006549.2 Cucumis melo HOM05D006587 ORTHO05D008487 5.8e-126 454.9 309 72.8
TAR633G1367 Trochodendron aralioides HOM05D006587 ORTHO05D008487 7.6e-126 454.5 373 67.0
BolC9t58560H Brassica oleracea HOM05D006587 ORTHO05D008487 1.3e-125 453.8 303 74.9
CsaV3_3G013530 Cucumis sativus L. HOM05D006587 ORTHO05D008487 1.7e-125 453.4 309 72.5
Glyma.20G143100 Glycine max HOM05D006587 ORTHO05D008487 3.8e-125 452.2 304 73.4
BcaC04g18580 Brassica carinata HOM05D006587 ORTHO05D008487 4.9e-125 451.8 303 74.6
C09p56970 Brassica napus HOM05D006587 ORTHO05D008487 4.9e-125 451.8 303 74.6
Sed0010167 Sechium edule HOM05D006587 ORTHO05D008487 4.9e-125 451.8 306 74.5
CAN.G69.11 Capsicum annuum HOM05D006587 ORTHO05D008487 6.5e-125 451.4 305 73.1
Lj5g0006939 Lotus japonicus HOM05D006587 ORTHO05D008487 6.5e-125 451.4 304 74.0
BraA10t44108Z Brassica rapa HOM05D006587 ORTHO05D008487 1.1e-124 450.7 302 74.8
arahy.Tifrunner.gnm1.ann1.HZWC9V Arachis hypogaea HOM05D006587 ORTHO05D008487 1.4e-124 450.3 302 75.2
Solyc01g079710.3 Solanum lycopersicum HOM05D006587 ORTHO05D008487 1.4e-124 450.3 367 64.0
Sopen01g031480 Solanum pennellii HOM05D006587 ORTHO05D008487 1.9e-124 449.9 367 64.0
VMungo0720G0184 Vigna mungo HOM05D006587 ORTHO05D008487 1.9e-124 449.9 304 73.0
A10p20380 Brassica napus HOM05D006587 ORTHO05D008487 5.5e-124 448.4 301 74.1
arahy.Tifrunner.gnm1.ann1.G9UJER Arachis hypogaea HOM05D006587 ORTHO05D008487 7.1e-124 448.0 302 74.5
Ciclev10005176m.g Citrus clementina HOM05D006587 ORTHO05D008487 7.1e-124 448.0 306 72.5
AL6G30780 Arabidopsis lyrata HOM05D006587 ORTHO05D008487 9.3e-124 447.6 305 72.8
AT5G19300 Arabidopsis thaliana HOM05D006587 ORTHO05D008487 9.3e-124 447.6 305 73.1
Lalb_Chr06g0164781 Lupinus albus HOM05D006587 ORTHO05D008487 1.6e-123 446.8 304 73.0
Sabra08G0113900 Salix brachista HOM05D006587 ORTHO05D008487 1.6e-123 446.8 290 74.1
TPR.G5533 Trifolium pratense HOM05D006587 ORTHO05D008487 2.7e-123 446.0 303 72.9
Carub.0006s1763 Capsella rubella HOM05D006587 ORTHO05D008487 3.5e-123 445.7 305 72.5
CARHR193670 Cardamine hirsuta HOM05D006587 ORTHO05D008487 3.5e-123 445.7 306 71.9
Lsat_1_v5_gn_9_80941 Lactuca sativa HOM05D006587 ORTHO05D008487 3.5e-123 445.7 300 74.3
HanXRQChr13g0400281 Helianthus annuus HOM05D006587 ORTHO05D008487 6.0e-123 444.9 302 73.8
MSTRG.24750 Avicennia marina HOM05D006587 ORTHO05D008487 1.3e-122 443.7 305 72.5
Thhalv10013731m.g Eutrema salsugineum HOM05D006587 ORTHO05D008487 1.3e-122 443.7 303 72.3
Sp6g25120 Schrenkiella parvula HOM05D006587 ORTHO05D008487 1.3e-122 443.7 305 72.8
Ca_10966_v3 Cicer arietinum L. HOM05D006587 ORTHO05D008487 2.3e-122 443.0 307 70.7
FAN17G1856 Fragaria x ananassa HOM05D000104 ORTHO05D006391 8.7e-122 441.0 363 65.8
Medtr1g105065 Medicago truncatula HOM05D006587 ORTHO05D008487 1.5e-121 440.3 303 72.3
Potri.010G091400 Populus trichocarpa HOM05D006587 ORTHO05D008487 1.9e-121 439.9 368 66.3
DCAR_002398 Daucus carota HOM05D006587 ORTHO05D008487 5.7e-121 438.3 303 72.9
FAN22G2243 Fragaria x ananassa HOM05D000104 ORTHO05D006391 1.3e-120 437.2 293 74.4
Aa31LG11G10390 Aethionema arabicum HOM05D006587 ORTHO05D008487 2.8e-120 436.0 307 70.7
Haze_00934 Corylus avellana HOM05D006587 ORTHO05D008487 3.7e-120 435.6 307 71.3
Migut.N00169 Erythranthe guttata HOM05D006587 ORTHO05D008487 4.8e-120 435.3 305 70.8
Ah.13g074000 Amaranthus hybridus HOM05D006587 ORTHO05D008487 1.4e-119 433.7 306 69.3
PSO302G0285 Papaver somniferum HOM05D006587 ORTHO05D008487 1.4e-119 433.7 302 69.9
Phvul.007G053900 Phaseolus vulgaris HOM05D006587 ORTHO05D008487 2.4e-119 433.0 307 69.7
Psat6g209880 Pisum sativum HOM05D006587 ORTHO05D008487 2.4e-119 433.0 302 71.5
EL10As3g23313 Beta vulgaris HOM05D006587 ORTHO05D008487 4.1e-119 432.2 305 70.2
PGSC0003DMG400008999 Solanum tuberosum HOM05D006587 ORTHO05D008487 5.3e-119 431.8 401 58.6
PSO170G4636 Papaver somniferum HOM05D006587 ORTHO05D008487 1.2e-118 430.6 304 70.1
MBI17_g12493_MAGBIO Magnolia biondii HOM05D006587 ORTHO05D008487 1.7e-117 426.8 278 72.3
SalBow5G0644 Salvia bowleyana HOM05D006587 ORTHO05D008487 1.7e-117 426.8 301 72.4
Peaxi162Scf01336g00122 Petunia axillaris HOM05D006587 ORTHO05D008487 1.2e-115 420.6 303 69.6
HPP92_010726 Vanilla planifolia HOM05D006587 ORTHO05D008487 1.6e-115 420.2 302 69.2
Hma1.2p1_0511F.1_g168950 Hydrangea macrophylla HOM05D006587 ORTHO05D008487 2.1e-115 419.9 284 71.1
Dinv38415 Davidia involucrata HOM05D006587 ORTHO05D008487 1.4e-114 417.2 268 77.6
Dinv44504 Davidia involucrata HOM05D006587 ORTHO05D008487 3.3e-113 412.5 244 80.3
Os04g0244500 Oryza sativa ssp. japonica HOM05D006587 ORTHO05D008487 3.7e-112 409.1 301 68.8
SalBow5G2730 Salvia bowleyana HOM05D006587 ORTHO05D008487 5.0e-109 398.7 302 68.5
Aqoxy2G03329 Aquilegia oxysepala HOM05D006587 ORTHO05D008487 4.2e-108 395.6 304 63.8
SGA_v2.0_scaffold10G05110 Striga asiatica HOM05D006587 ORTHO05D008487 2.3e-106 389.8 315 64.8
Nitab4.5_0000180g0030 Nicotiana tabacum HOM05D006587 ORTHO05D008487 6.3e-104 381.7 371 58.8
Lj3A741G38 Lonicera japonica HOM05D006587 ORTHO05D008487 5.9e-102 375.2 290 66.2
Cpa.g.sc147.29 Carica papaya HOM05D006587 ORTHO05D008487 2.2e-101 373.2 235 76.6
AUR62043415 Chenopodium quinoa HOM05D006587 ORTHO05D008487 2.2e-101 373.2 264 68.2
QL06p003535 Quercus lobata HOM05D006587 ORTHO05D008487 3.7e-96 355.9 245 71.8
Sabra10G0051900 Salix brachista HOM05D006587 ORTHO05D008487 5.9e-94 348.6 300 58.7
ATR0626G244 Amborella trichopoda HOM05D006587 ORTHO05D008487 1.5e-92 344.0 258 65.9
Pp3c7_20660 Physcomitrium patens HOM05D006587 ORTHO05D008487 2.3e-90 336.7 303 59.1
Mapoly0049s0075 Marchantia polymorpha HOM05D006587 ORTHO05D008487 5.7e-89 332.0 302 54.3
SMO364G0578 Selaginella moellendorffii HOM05D006587 ORTHO05D008487 9.7e-89 331.3 308 56.5
unitig_899.g15640 Utricularia gibba HOM05D006587 ORTHO05D008487 4.8e-88 328.9 301 60.1
Duzib151G0305 Durio zibethinus HOM05D006587 ORTHO05D008487 5.5e-84 315.5 305 59.0
Aqoxy2G03328 Aquilegia oxysepala HOM05D006587 ORTHO05D008487 2.5e-76 290.0 304 55.6
PRCOL_00002662 Prasinoderma coloniale HOM05D006587 ORTHO05D008487 5.2e-74 282.3 324 47.5
AUR62038173 Chenopodium quinoa HOM05D006587 ORTHO05D008487 7.0e-71 271.9 280 51.8
CSS0022730 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 2.0e-70 270.4 321 55.8
Zm00001eb373340 Zea mays HOM05D006587 ORTHO05D008487 1.9e-68 263.8 208 65.9
CSS0044999 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 6.8e-66 255.4 242 56.6
FvH4_4g14960 Fragaria vesca HOM05D006587 ORTHO05D008487 7.0e-63 245.4 169 75.1
CDE05G0907 Ceratophyllum demersum HOM05D006587 ORTHO05D008487 1.9e-60 237.3 173 68.8
Oeu040660.1 Olea europaea HOM05D006587 ORTHO05D008487 1.6e-54 217.6 201 62.2
Cfa024389 Carpinus fangiana HOM05D006587 ORTHO05D008487 4.0e-50 203.0 368 36.1
COL.COLO4_06205 Corchorus olitorius HOM05D006587 ORTHO05D008487 3.4e-49 199.9 194 56.7
AagrBONN_evm.TU.Sc2ySwM_340.504 Anthoceros agrestis HOM05D006587 ORTHO05D008487 4.1e-47 193.0 182 59.3
Cre16.g670617 Chlamydomonas reinhardtii HOM05D006587 ORTHO05D008487 1.0e-45 188.3 346 36.4
Glyma.10G250600 Glycine max HOM05D006587 ORTHO05D008487 3.0e-45 186.8 122 76.2
Lalb_Chr02g0144661 Lupinus albus HOM05D006587 ORTHO05D008487 1.3e-40 171.4 183 53.6
QL06p003531 Quercus lobata HOM05D006587 ORTHO05D008487 2.8e-27 127.1 69 84.1
Lalb_Chr02g0144651 Lupinus albus HOM05D006587 ORTHO05D008487 3.2e-15 87.0 64 62.5
Lsat_1_v5_gn_9_31900 Lactuca sativa HOM05D006587 ORTHO05D011576 6.0e-14 82.8 83 47.0
TAR362G0446 Trochodendron aralioides HOM05D006587 ORTHO05D008487 1.1e-10 72.0 43 88.4
AUR62038172 Chenopodium quinoa HOM05D006503 ORTHO05D008116 4.0e-10 70.1 104 40.4
PSO151G0052 Papaver somniferum HOM05D004736 ORTHO05D030424 4.0e-10 70.1 77 51.9
SEGI_20820 Sequoiadendron giganteum HOM05D006587 ORTHO05D008487 9.0e-10 68.9 78 56.4
SEGI_15408 Sequoiadendron giganteum HOM05D006587 ORTHO05D008487 2.0e-09 67.8 45 64.4
Gorai.004G106600 Gossypium raimondii HOM05D006587 ORTHO05D008487 3.4e-09 67.0 40 82.5
arahy.Tifrunner.gnm1.ann1.Y836FI Arachis hypogaea HOM05D000158 ORTHO05D000197 1.0e-08 65.5 39 74.4


User provided reference genes

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