Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H03482 Eucalyptus grandis HOM05D004138 ORTHO05D004898 6.0e-155 550.8 281 100.0
PGR004G1517 Punica granatum HOM05D004138 ORTHO05D004898 1.1e-113 413.7 282 78.7
CSS0016260 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 2.4e-111 406.0 287 76.0
arahy.Tifrunner.gnm1.ann1.WZ653D Arachis hypogaea HOM05D004138 ORTHO05D004898 7.9e-107 391.0 287 74.2
arahy.Tifrunner.gnm1.ann1.Y7X6HY Arachis hypogaea HOM05D004138 ORTHO05D004898 7.9e-107 391.0 286 74.1
Hma1.2p1_1344F.1_g277140 Hydrangea macrophylla HOM05D004138 ORTHO05D004898 3.9e-106 388.7 283 72.4
Gorai.006G239100 Gossypium raimondii HOM05D004138 ORTHO05D004898 6.7e-106 387.9 222 88.3
CsaV3_7G022530 Cucumis sativus L. HOM05D004138 ORTHO05D004898 8.7e-106 387.5 283 73.9
arahy.Tifrunner.gnm1.ann1.M0DXBI Arachis hypogaea HOM05D004138 ORTHO05D004898 1.9e-105 386.3 222 86.0
Duzib052G0532 Durio zibethinus HOM05D004138 ORTHO05D004898 1.9e-105 386.3 288 72.6
Dinv44535 Davidia involucrata HOM05D004138 ORTHO05D004898 7.4e-105 384.4 279 73.5
Gohir.A09G215700 Gossypium hirsutum HOM05D004138 ORTHO05D004898 9.7e-105 384.0 283 74.6
Manes.03G178800 Manihot esculenta HOM05D004138 ORTHO05D004898 1.3e-104 383.6 284 73.2
PSO210G3182 Papaver somniferum HOM05D004138 ORTHO05D004898 1.6e-104 383.3 281 71.5
PSO832G0920 Papaver somniferum HOM05D004138 ORTHO05D004898 3.7e-104 382.1 281 71.2
Nn4g26636 Nelumbo nucifera HOM05D004138 ORTHO05D004898 8.2e-104 380.9 223 85.7
MD13G1192800 Malus domestica HOM05D004138 ORTHO05D004898 1.1e-103 380.6 290 71.0
CiPaw.01G165700 Carya illinoinensis HOM05D004138 ORTHO05D004898 1.4e-103 380.2 284 71.5
Gohir.D09G218200 Gossypium hirsutum HOM05D004138 ORTHO05D004898 1.8e-103 379.8 222 87.4
CAN.G490.3 Capsicum annuum HOM05D004138 ORTHO05D004898 3.1e-103 379.0 285 72.6
Sed0017770 Sechium edule HOM05D004138 ORTHO05D004898 3.1e-103 379.0 281 71.2
Lj5g0002897 Lotus japonicus HOM05D004138 ORTHO05D004898 4.1e-103 378.6 282 72.0
CSS0012312 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 6.9e-103 377.9 285 71.9
CANSAT78G2043 Cannabis sativa HOM05D004138 ORTHO05D004898 9.1e-103 377.5 271 74.5
Aqoxy2G03389 Aquilegia oxysepala HOM05D004138 ORTHO05D004898 1.2e-102 377.1 289 70.6
Ca_10902_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 1.2e-102 377.1 203 91.6
Atru.ctg752_3.80 Acer truncatum HOM05D004138 ORTHO05D004898 2.6e-102 375.9 201 93.0
Thecc.04G231800 Theobroma cacao HOM05D004138 ORTHO05D004898 2.6e-102 375.9 285 71.6
Ciclev10005599m.g Citrus clementina HOM05D004138 ORTHO05D004898 3.4e-102 375.6 288 72.2
MD16G1193500 Malus domestica HOM05D004138 ORTHO05D004898 3.4e-102 375.6 292 69.9
TPR.G34563 Trifolium pratense HOM05D004138 ORTHO05D004898 3.4e-102 375.6 225 84.0
Lj6A608T71 Lonicera japonica HOM05D004138 ORTHO05D004898 4.5e-102 375.2 222 82.4
CiPaw.02G097200 Carya illinoinensis HOM05D004138 ORTHO05D004898 7.7e-102 374.4 232 82.3
DCAR_002386 Daucus carota HOM05D004138 ORTHO05D004898 7.7e-102 374.4 230 83.5
Potri.010G087600 Populus trichocarpa HOM05D004138 ORTHO05D004898 1.0e-101 374.0 220 85.5
Phvul.007G057200 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 1.3e-101 373.6 219 85.4
THA.LOC104808545 Tarenaya hassleriana HOM05D004138 ORTHO05D004898 1.3e-101 373.6 235 80.9
TPR.G5464 Trifolium pratense HOM05D004138 ORTHO05D004898 1.3e-101 373.6 285 70.9
BcaB02g07851 Brassica carinata HOM05D004138 ORTHO05D004898 1.7e-101 373.2 223 85.2
Cfa015643 Carpinus fangiana HOM05D004138 ORTHO05D004898 1.7e-101 373.2 223 83.4
CDE07G0326 Ceratophyllum demersum HOM05D004138 ORTHO05D004898 1.7e-101 373.2 220 84.1
Ca_26329_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 1.7e-101 373.2 278 71.6
Lj3A735T49 Lonicera japonica HOM05D004138 ORTHO05D004898 2.2e-101 372.9 283 72.4
VMungo0720G0383 Vigna mungo HOM05D004138 ORTHO05D004898 2.2e-101 372.9 222 84.2
SalBow3G1121 Salvia bowleyana HOM05D004138 ORTHO05D004898 2.9e-101 372.5 224 83.9
TWI15G0835 Tripterygium wilfordii HOM05D004138 ORTHO05D004898 2.9e-101 372.5 217 87.6
Migut.N00183 Erythranthe guttata HOM05D004138 ORTHO05D004898 3.8e-101 372.1 286 69.6
Lalb_Chr10g0096121 Lupinus albus HOM05D004138 ORTHO05D004898 3.8e-101 372.1 205 88.8
Glyma.20G145900 Glycine max HOM05D004138 ORTHO05D004898 5.0e-101 371.7 219 85.4
Lalb_Chr17g0338611 Lupinus albus HOM05D004138 ORTHO05D004898 5.0e-101 371.7 214 86.9
Medtr1g103820 Medicago truncatula HOM05D004138 ORTHO05D004898 5.0e-101 371.7 222 82.4
Psat6g207600 Pisum sativum HOM05D004138 ORTHO05D004898 6.5e-101 371.3 284 70.4
VMungo0720G1944 Vigna mungo HOM05D004138 ORTHO05D004898 6.5e-101 371.3 283 71.4
Aa31LG8G8990 Aethionema arabicum HOM05D004138 ORTHO05D004898 8.5e-101 370.9 228 82.5
Cc03_g03750 Coffea canephora HOM05D004138 ORTHO05D004898 8.5e-101 370.9 224 82.6
BcaB06g26344 Brassica carinata HOM05D004138 ORTHO05D004898 1.9e-100 369.8 236 79.7
PGSC0003DMG400030085 Solanum tuberosum HOM05D004138 ORTHO05D004898 1.9e-100 369.8 198 90.9
Phvul.007G275100 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 2.5e-100 369.4 286 71.0
Sp3g20190 Schrenkiella parvula HOM05D004138 ORTHO05D004898 2.5e-100 369.4 235 80.4
Sp7g13050 Schrenkiella parvula HOM05D004138 ORTHO05D004898 2.5e-100 369.4 229 81.7
Solyc09g076020.3 Solanum lycopersicum HOM05D004138 ORTHO05D004898 2.5e-100 369.4 290 69.3
CARHR221500 Cardamine hirsuta HOM05D004138 ORTHO05D004898 3.2e-100 369.0 226 83.2
MSTRG.21855 Avicennia marina HOM05D004138 ORTHO05D004898 4.2e-100 368.6 284 69.7
Sopen09g030850 Solanum pennellii HOM05D004138 ORTHO05D004898 4.2e-100 368.6 283 70.7
CARHR098330 Cardamine hirsuta HOM05D004138 ORTHO05D004898 5.5e-100 368.2 232 80.2
FvH4_4g15510 Fragaria vesca HOM05D004138 ORTHO05D004898 5.5e-100 368.2 234 79.9
RcHm_v2.0_Chr4g0416251 Rosa chinensis HOM05D004138 ORTHO05D004898 7.2e-100 367.9 217 85.7
DCAR_027216 Daucus carota HOM05D004138 ORTHO05D004898 9.4e-100 367.5 216 86.6
BcaB04g20518 Brassica carinata HOM05D004138 ORTHO05D004898 1.2e-99 367.1 282 72.0
BcaC05g28070 Brassica carinata HOM05D004138 ORTHO05D004898 1.2e-99 367.1 222 83.3
C05p40930 Brassica napus HOM05D004138 ORTHO05D004898 1.2e-99 367.1 222 83.3
BcaC09g49174 Brassica carinata HOM05D004138 ORTHO05D004898 1.6e-99 366.7 252 75.4
Carub.0003s2260 Capsella rubella HOM05D004138 ORTHO05D004898 1.6e-99 366.7 232 80.6
QL06p002509 Quercus lobata HOM05D004138 ORTHO05D004898 3.6e-99 365.5 222 82.9
Thhalv10021310m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 4.6e-99 365.2 235 78.7
AL7G40920 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 7.9e-99 364.4 223 83.4
AT3G22425 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 7.9e-99 364.4 232 80.6
Carub.0007s2719 Capsella rubella HOM05D004138 ORTHO05D004898 1.8e-98 363.2 235 80.0
Haze_00903 Corylus avellana HOM05D004138 ORTHO05D004898 1.8e-98 363.2 230 80.4
Oeu050278.3 Olea europaea HOM05D004138 ORTHO05D004898 1.8e-98 363.2 217 83.4
ATR0697G231 Amborella trichopoda HOM05D004138 ORTHO05D004898 2.3e-98 362.8 223 80.7
TAR636G0642 Trochodendron aralioides HOM05D004138 ORTHO05D004898 2.3e-98 362.8 223 82.1
EL10Ac1g01312 Beta vulgaris HOM05D004138 ORTHO05D004898 3.0e-98 362.5 212 86.3
AUR62033623 Chenopodium quinoa HOM05D004138 ORTHO05D004898 3.0e-98 362.5 272 72.1
TAR365G0475 Trochodendron aralioides HOM05D004138 ORTHO05D004898 3.0e-98 362.5 274 71.5
GSVIVG01017973001 Vitis vinifera HOM05D004138 ORTHO05D004898 5.1e-98 361.7 223 80.7
AUR62034751 Chenopodium quinoa HOM05D004138 ORTHO05D004898 6.7e-98 361.3 246 76.8
Thhalv10025980m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 6.7e-98 361.3 222 83.3
Sc10g0004960 Simmondsia chinensis HOM05D004138 ORTHO05D004898 8.8e-98 360.9 280 71.1
ECA238G3454 Erigeron canadensis HOM05D004138 ORTHO05D004898 1.5e-97 360.1 198 88.9
Lsat_1_v5_gn_2_31480 Lactuca sativa HOM05D004138 ORTHO05D004898 5.7e-97 358.2 279 69.9
Os04g0617800 Oryza sativa ssp. japonica HOM05D004138 ORTHO05D004898 5.7e-97 358.2 225 81.8
A01p32660 Brassica napus HOM05D004138 ORTHO05D004898 7.4e-97 357.8 225 80.4
Rhsim02G0024100 Rhododendron simsii HOM05D004138 ORTHO05D004898 7.4e-97 357.8 300 66.0
BraA01t03394Z Brassica rapa HOM05D004138 ORTHO05D004898 2.8e-96 355.9 243 76.1
MELO3C012647.2 Cucumis melo HOM05D004138 ORTHO05D004898 2.8e-96 355.9 294 67.0
FAN07G1942 Fragaria x ananassa HOM05D004138 ORTHO05D004898 2.8e-96 355.9 226 79.2
HanXRQChr14g0432251 Helianthus annuus HOM05D004138 ORTHO05D004898 2.8e-96 355.9 220 80.9
FAN17G0737 Fragaria x ananassa HOM05D004138 ORTHO05D004898 4.8e-96 355.1 226 79.2
FAN12G1931 Fragaria x ananassa HOM05D004138 ORTHO05D004898 8.2e-96 354.4 224 79.5
FAN22G1640 Fragaria x ananassa HOM05D004138 ORTHO05D004898 8.2e-96 354.4 224 79.5
A05p26300 Brassica napus HOM05D004138 ORTHO05D004898 1.8e-95 353.2 225 79.1
AT4G14910 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 2.4e-95 352.8 230 78.3
Nitab4.5_0001560g0020 Nicotiana tabacum HOM05D004138 ORTHO05D004898 2.4e-95 352.8 274 69.3
BolC5t32835H Brassica oleracea HOM05D004138 ORTHO05D004898 4.1e-95 352.1 212 83.0
BolC1t04138H Brassica oleracea HOM05D004138 ORTHO05D004898 5.3e-95 351.7 242 74.8
C01p41840 Brassica napus HOM05D004138 ORTHO05D004898 1.5e-94 350.1 242 74.8
HanXRQChr09g0265721 Helianthus annuus HOM05D004138 ORTHO05D004898 2.0e-94 349.7 292 65.1
Zm00001eb070570 Zea mays HOM05D004138 ORTHO05D004898 2.6e-94 349.4 219 81.7
Haze_03894 Corylus avellana HOM05D004138 ORTHO05D004898 4.5e-94 348.6 216 82.4
Actinidia36959 Actinidia chinensis HOM05D004138 ORTHO05D004898 5.0e-93 345.1 277 69.7
Pp3c13_21930 Physcomitrium patens HOM05D004138 ORTHO05D004898 5.5e-92 341.7 198 83.8
Rhsim02G0024500 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.6e-91 340.1 320 60.6
Mapoly0095s0045 Marchantia polymorpha HOM05D004138 ORTHO05D004898 2.7e-91 339.3 198 82.8
Cpa.g.sc58.111 Carica papaya HOM05D004138 ORTHO05D004898 3.3e-89 332.4 271 67.9
Sed0010859 Sechium edule HOM05D004138 ORTHO05D004898 1.8e-87 326.6 269 65.4
Hund12131 Selenicereus undatus HOM05D004138 ORTHO05D004898 1.6e-86 323.6 261 67.4
CBR_g48324 Chara braunii HOM05D004138 ORTHO05D004898 7.7e-86 321.2 196 80.6
Nitab4.5_0000043g0130 Nicotiana tabacum HOM05D004138 ORTHO05D004898 2.2e-85 319.7 206 79.1
Prupe.1G013300 Prunus persica HOM05D004138 ORTHO05D004898 1.6e-83 313.5 289 64.0
Psat6g050360 Pisum sativum HOM05D004138 ORTHO05D004898 4.7e-83 312.0 166 90.4
Potri.008G152701 Populus trichocarpa HOM05D004138 ORTHO05D004898 8.0e-83 311.2 194 80.4
ClCG06G006210 Citrullus lanatus HOM05D004138 ORTHO05D004898 8.8e-82 307.8 272 64.7
Rhsim02G0024700 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.3e-80 303.9 316 56.3
Cre02.g103850 Chlamydomonas reinhardtii HOM05D004138 ORTHO05D004898 1.8e-79 300.1 237 65.8
SMO367G0933 Selaginella moellendorffii HOM05D004138 ORTHO05D004898 1.8e-79 300.1 250 64.4
Rhsim02G0025100 Rhododendron simsii HOM05D004138 ORTHO05D004898 5.9e-78 295.0 238 66.0
COL.COLO4_04735 Corchorus olitorius HOM05D004138 ORTHO05D004898 1.0e-77 294.3 166 87.3
SGA_v2.0_scaffold10G05080 Striga asiatica HOM05D004138 ORTHO05D004898 8.5e-77 291.2 168 85.1
SGA_v2.0_scaffold20G09126 Striga asiatica HOM05D004138 ORTHO05D004898 5.5e-76 288.5 168 83.3
Oeu031232.1 Olea europaea HOM05D004138 ORTHO05D004898 2.1e-75 286.6 155 88.4
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 2.3e-74 283.1 196 70.9
Peaxi162Scf00092g01021 Petunia axillaris HOM05D004138 ORTHO05D004898 4.4e-73 278.9 192 75.0
Rhsim02G0025200 Rhododendron simsii HOM05D004138 ORTHO05D004898 9.8e-73 277.7 287 57.8
Rhsim02G0024200 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.1e-71 274.2 151 88.7
Rhsim02G0024800 Rhododendron simsii HOM05D004138 ORTHO05D004898 4.1e-71 272.3 279 57.0
SEGI_10012 Sequoiadendron giganteum HOM05D004138 ORTHO05D004898 7.0e-71 271.6 148 87.2
HPP92_026352 Vanilla planifolia HOM05D004138 ORTHO05D004898 1.6e-70 270.4 213 66.7
Dinv13992 Davidia involucrata HOM05D004138 ORTHO05D004898 1.3e-69 267.3 230 65.7
AL7G43460 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 3.6e-67 259.2 159 83.0
MBI06_g26001_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 6.8e-66 255.0 272 57.7
MBI06_g37250_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 2.0e-65 253.4 204 67.2
Sabra10G0055200 Salix brachista HOM05D004138 ORTHO05D004898 3.7e-64 249.2 175 74.3
AL7G43530 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 4.1e-63 245.7 149 83.2
CDE10G0981 Ceratophyllum demersum HOM05D000366 ORTHO05D000437 6.6e-61 238.4 219 61.6
Lj2g0010828 Lotus japonicus HOM05D004138 ORTHO05D004898 7.3e-60 235.0 167 73.1
arahy.Tifrunner.gnm1.ann1.PP7NHW Arachis hypogaea HOM05D004138 ORTHO05D004898 2.2e-56 223.4 194 65.5
AagrBONN_evm.TU.Sc2ySwM_228.3076 Anthoceros agrestis HOM05D004138 ORTHO05D004898 1.1e-55 221.1 158 67.7
Haze_27397 Corylus avellana HOM05D004138 ORTHO05D004898 5.4e-55 218.8 290 43.1
Ah.04g154580 Amaranthus hybridus HOM05D004138 ORTHO05D004898 4.7e-51 205.7 130 76.2
ATR0661G018 Amborella trichopoda HOM05D004138 ORTHO05D004898 7.0e-47 191.8 131 73.3
Sabra08G0116300 Salix brachista HOM05D004138 ORTHO05D004898 1.0e-45 188.0 345 40.6
SHI00436 Sapria himalayana HOM05D004138 ORTHO05D004898 8.3e-40 168.3 153 58.8
PRCOL_00007017 Prasinoderma coloniale HOM05D004138 ORTHO05D004898 2.3e-37 160.2 188 43.1
MCO15G615 Micromonas commoda HOM05D004138 ORTHO05D004898 2.4e-34 150.2 200 40.0
Cfa024592 Carpinus fangiana HOM05D004138 ORTHO05D004898 3.8e-32 142.9 225 38.7
Actinidia40147 Actinidia chinensis HOM05D004138 ORTHO05D004898 4.9e-32 142.5 84 82.1
arahy.Tifrunner.gnm1.ann1.UX9Z2U Arachis hypogaea HOM05D004138 ORTHO05D004898 2.7e-22 110.2 62 83.9
arahy.Tifrunner.gnm1.ann1.J4BC6Z Arachis hypogaea HOM05D004138 ORTHO05D004898 1.3e-21 107.8 62 82.3
Psat4g223320 Pisum sativum HOM05D004138 ORTHO05D004898 7.3e-20 102.1 88 64.8
Medtr8g045710 Medicago truncatula HOM05D004138 ORTHO05D004898 3.1e-18 96.7 59 81.4
Rhsim02G0025000 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.5e-12 77.0 153 40.5
Actinidia40148 Actinidia chinensis HOM05D004138 ORTHO05D004898 9.6e-12 75.1 85 47.1
AL5G12050 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 6.2e-11 72.4 40 85.0
Medtr1g071390 Medicago truncatula HOM05D004138 ORTHO05D004898 8.1e-11 72.0 118 39.0
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 1.1e-10 71.6 40 85.0
CSS0002625 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 2.4e-10 70.5 36 88.9
CARHR221520 Cardamine hirsuta HOM05D004138 ORTHO05D004898 3.1e-10 70.1 55 67.3
arahy.Tifrunner.gnm1.ann1.RWV13Y Arachis hypogaea HOM05D000351 ORTHO05D018478 2.9e-08 63.5 32 90.6
CSS0029286 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.4e-07 61.2 42 69.0
CSS0040239 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 9.3e-07 58.5 34 79.4
Rhsim08G0128300 Rhododendron simsii HOM05D004138 ORTHO05D339665 6.0e-06 55.8 31 80.6


User provided reference genes

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