Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H03172 Eucalyptus grandis HOM05D004913 ORTHO05D006150 1.5e-160 569.7 335 100.0
Thecc.04G244000 Theobroma cacao HOM05D004913 ORTHO05D006150 2.6e-128 462.6 338 79.9
CiPaw.02G117800 Carya illinoinensis HOM05D004913 ORTHO05D006150 1.1e-126 457.2 331 77.0
Duzib052G0554 Durio zibethinus HOM05D004913 ORTHO05D006150 1.8e-126 456.4 338 78.1
vmacro15402 Vaccinium macrocarpon HOM05D004913 ORTHO05D006150 1.0e-121 440.7 349 74.5
GSVIVG01018096001 Vitis vinifera HOM05D004913 ORTHO05D006150 1.8e-121 439.9 336 75.6
PGR004G2231 Punica granatum HOM05D004913 ORTHO05D006150 2.6e-120 436.0 337 78.0
CSS0025455 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D006150 7.4e-120 434.5 347 75.8
CsaV3_3G012680 Cucumis sativus L. HOM05D004913 ORTHO05D006150 9.7e-120 434.1 335 77.0
QL06p015098 Quercus lobata HOM05D004913 ORTHO05D006150 3.1e-118 429.1 340 77.1
Gohir.D10G152000 Gossypium hirsutum HOM05D004913 ORTHO05D006150 7.0e-118 427.9 289 83.4
Duzib151G0562 Durio zibethinus HOM05D004913 ORTHO05D006150 7.7e-117 424.5 339 75.2
RcHm_v2.0_Chr5g0043971 Rosa chinensis HOM05D004913 ORTHO05D006150 1.7e-116 423.3 335 75.8
Manes.15G035800 Manihot esculenta HOM05D004913 ORTHO05D006150 5.0e-116 421.8 293 81.6
MELO3C006479.2 Cucumis melo HOM05D004913 ORTHO05D006150 1.5e-115 420.2 371 69.5
Gorai.011G170500 Gossypium raimondii HOM05D004913 ORTHO05D006150 1.5e-115 420.2 298 80.9
Gohir.A10G114500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 5.5e-115 418.3 298 80.5
Potri.008G160800 Populus trichocarpa HOM05D004913 ORTHO05D006150 5.5e-115 418.3 340 73.2
MD13G1204100 Malus domestica HOM05D004913 ORTHO05D006150 1.2e-114 417.2 361 67.9
Cpa.g.sc58.23 Carica papaya HOM05D004913 ORTHO05D006150 4.7e-114 415.2 336 73.8
TAR636G2191 Trochodendron aralioides HOM05D004913 ORTHO05D006150 4.0e-113 412.1 327 74.3
Sed0027984 Sechium edule HOM05D004913 ORTHO05D006150 8.8e-113 411.0 334 75.4
CSS0009777 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D003182 4.4e-112 408.7 333 73.3
CANSAT78G1520 Cannabis sativa HOM05D004913 ORTHO05D006150 7.5e-112 407.9 359 68.2
Haze_11271 Corylus avellana HOM05D004913 ORTHO05D006150 2.7e-109 399.4 289 78.9
Sabra08G0122700 Salix brachista HOM05D004913 ORTHO05D006150 2.7e-109 399.4 309 75.1
Gorai.006G070100 Gossypium raimondii HOM05D004913 ORTHO05D006150 1.3e-108 397.1 287 79.8
Prupe.1G027200 Prunus persica HOM05D004913 ORTHO05D006150 1.3e-108 397.1 347 71.2
FvH4_3g24470 Fragaria vesca HOM05D004913 ORTHO05D006150 2.2e-108 396.4 336 73.5
Ciclev10005381m.g Citrus clementina HOM05D004913 ORTHO05D006150 6.5e-108 394.8 338 72.8
Gohir.A09G057300 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.5e-107 393.7 337 75.4
Potri.010G078500 Populus trichocarpa HOM05D004913 ORTHO05D006150 1.5e-107 393.7 294 76.9
Oeu032612.1 Olea europaea HOM05D004913 ORTHO05D006150 1.9e-107 393.3 342 69.6
MD16G1206200 Malus domestica HOM05D004913 ORTHO05D006150 4.2e-107 392.1 345 69.0
Rhsim02G0032600 Rhododendron simsii HOM05D004913 ORTHO05D006150 2.7e-106 389.4 348 69.3
MBI11_g38514_MAGBIO Magnolia biondii HOM05D004913 ORTHO05D006150 1.4e-105 387.1 340 68.5
Phvul.003G138434 Phaseolus vulgaris HOM05D004913 ORTHO05D006150 1.8e-105 386.7 322 69.9
Sed0018032 Sechium edule HOM05D004913 ORTHO05D003182 6.8e-105 384.8 333 71.2
TWI09G0491 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 6.8e-105 384.8 337 71.2
Manes.03G170000 Manihot esculenta HOM05D004913 ORTHO05D006150 1.3e-103 380.6 339 68.4
MSTRG.21888 Avicennia marina HOM05D004913 ORTHO05D006150 1.7e-103 380.2 333 70.3
SGA_v2.0_scaffold101G29779 Striga asiatica HOM05D004913 ORTHO05D006150 1.7e-103 380.2 322 71.7
FAN11G1852 Fragaria x ananassa HOM05D004913 ORTHO05D006150 3.7e-103 379.0 337 71.2
Lj5g0012164 Lotus japonicus HOM05D004913 ORTHO05D006150 3.7e-103 379.0 338 69.5
Nn1g02556 Nelumbo nucifera HOM05D004913 ORTHO05D006150 1.1e-102 377.5 335 66.0
VMungo0720G1087 Vigna mungo HOM05D004913 ORTHO05D006150 5.9e-101 371.7 323 68.7
Dinv44614 Davidia involucrata HOM05D004913 ORTHO05D006150 1.7e-100 370.2 341 68.3
arahy.Tifrunner.gnm1.ann1.8JLR9N Arachis hypogaea HOM05D004913 ORTHO05D006150 1.9e-99 366.7 333 68.8
THA.LOC104815979 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 3.6e-98 362.5 305 71.5
arahy.Tifrunner.gnm1.ann1.9S1KBE Arachis hypogaea HOM05D004913 ORTHO05D006150 6.8e-97 358.2 332 69.9
Glyma.20G210600 Glycine max HOM05D004913 ORTHO05D006150 5.4e-94 348.6 293 70.6
Glyma.10G179800 Glycine max HOM05D004913 ORTHO05D006150 9.2e-94 347.8 284 71.5
Lalb_Chr06g0168981 Lupinus albus HOM05D004913 ORTHO05D006150 1.6e-93 347.1 294 70.4
Lalb_Chr21g0311951 Lupinus albus HOM05D004913 ORTHO05D006150 3.5e-93 345.9 296 69.6
Gohir.D09G056500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 7.8e-93 344.7 241 80.9
TWI73G0814 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 1.7e-92 343.6 348 64.1
THA.LOC104826068 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 2.9e-92 342.8 287 70.7
ATR0665G449 Amborella trichopoda HOM05D004913 ORTHO05D006150 3.8e-92 342.4 345 60.9
Migut.N00232 Erythranthe guttata HOM05D004913 ORTHO05D006150 3.8e-92 342.4 350 66.0
PSO210G5612 Papaver somniferum HOM05D004913 ORTHO05D006150 1.2e-90 337.4 294 67.7
AL1G13830 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 6.1e-90 335.1 304 66.1
Sp2g08510 Schrenkiella parvula HOM05D004913 ORTHO05D006150 3.0e-89 332.8 292 68.2
HanXRQChr12g0381181 Helianthus annuus HOM05D004913 ORTHO05D006150 8.9e-89 331.3 341 63.3
PSO832G0934 Papaver somniferum HOM05D004913 ORTHO05D006150 1.2e-88 330.9 306 65.4
AT1G04230 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 7.5e-88 328.2 304 65.1
Psat6g114920 Pisum sativum HOM05D004913 ORTHO05D006150 8.3e-87 324.7 374 57.2
CARHR003560 Cardamine hirsuta HOM05D004913 ORTHO05D006150 1.4e-86 323.9 338 63.0
EL10Ac4g07493 Beta vulgaris HOM05D004913 ORTHO05D006150 2.4e-86 323.2 326 62.9
Lsat_1_v5_gn_5_67500 Lactuca sativa HOM05D004913 ORTHO05D006150 2.4e-86 323.2 360 60.6
Lj3A719T118 Lonicera japonica HOM05D004913 ORTHO05D006150 2.4e-86 323.2 313 64.5
Ca_09877_v3 Cicer arietinum L. HOM05D004913 ORTHO05D006150 4.1e-86 322.4 257 73.9
AL37U10050 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 2.7e-85 319.7 291 65.6
DCAR_030710 Daucus carota HOM05D004913 ORTHO05D006150 2.7e-85 319.7 340 62.4
Medtr1g076290 Medicago truncatula HOM05D004913 ORTHO05D006150 3.5e-85 319.3 287 68.3
BolC7t43157H Brassica oleracea HOM05D004913 ORTHO05D006150 7.8e-85 318.2 373 55.5
C07p26280 Brassica napus HOM05D004913 ORTHO05D006150 1.3e-84 317.4 373 55.5
Carub.0001s0342 Capsella rubella HOM05D004913 ORTHO05D006150 2.3e-84 316.6 338 59.2
FAN25G2316 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.9e-83 313.5 336 65.8
AUR62041210 Chenopodium quinoa HOM05D004913 ORTHO05D006150 3.3e-83 312.8 339 61.1
AT5G43720 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 1.2e-82 310.8 342 60.5
FAN25G1200 Fragaria x ananassa HOM05D004913 ORTHO05D006150 2.8e-82 309.7 323 65.0
COL.COLO4_15768 Corchorus olitorius HOM05D000979 ORTHO05D003182 3.6e-82 309.3 349 59.6
CDE07G0872 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 6.2e-82 308.5 334 59.3
Actinidia05471 Actinidia chinensis HOM05D004913 ORTHO05D006150 1.8e-81 307.0 293 66.6
Sopen09g032190 Solanum pennellii HOM05D004913 ORTHO05D006150 1.8e-81 307.0 337 58.5
Solyc09g083270.4 Solanum lycopersicum HOM05D004913 ORTHO05D006150 3.1e-81 306.2 337 58.5
Carub.0008s0491 Capsella rubella HOM05D004913 ORTHO05D006150 5.2e-81 305.4 292 63.0
BolC2t10451H Brassica oleracea HOM05D004913 ORTHO05D006150 4.4e-80 302.4 352 58.8
FAN21G0973 Fragaria x ananassa HOM05D004913 ORTHO05D006150 9.8e-80 301.2 270 68.5
CAN.G626.13 Capsicum annuum HOM05D004913 ORTHO05D006150 2.2e-79 300.1 339 57.5
PGSC0003DMG400006092 Solanum tuberosum HOM05D004913 ORTHO05D006150 1.9e-78 297.0 326 58.6
Aqoxy2G03527 Aquilegia oxysepala HOM05D004913 ORTHO05D006150 9.2e-78 294.7 323 58.2
ECA233G3913 Erigeron canadensis HOM05D004913 ORTHO05D006150 1.2e-77 294.3 361 56.2
FAN16G1149 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.2e-77 294.3 217 78.3
Nitab4.5_0000525g0090 Nicotiana tabacum HOM05D004913 ORTHO05D006150 1.5e-75 287.3 348 55.5
AUR62040390 Chenopodium quinoa HOM05D004913 ORTHO05D006150 7.3e-75 285.0 289 61.6
BcaC06g31682 Brassica carinata HOM05D004913 ORTHO05D006150 1.1e-73 281.2 290 61.0
Nitab4.5_0004203g0050 Nicotiana tabacum HOM05D004913 ORTHO05D006150 6.8e-73 278.5 333 53.8
Thhalv10003245m.g Eutrema salsugineum HOM05D004913 ORTHO05D006150 2.0e-72 276.9 293 60.1
CARHR179900 Cardamine hirsuta HOM05D004913 ORTHO05D006150 4.4e-72 275.8 212 74.1
Peaxi162Scf01416g00120 Petunia axillaris HOM05D004913 ORTHO05D006150 5.8e-72 275.4 346 52.0
CDE04G3353 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 9.9e-72 274.6 334 54.2
Migut.G00417 Erythranthe guttata HOM05D004913 ORTHO05D006150 1.3e-71 274.2 298 59.1
A02p27910 Brassica napus HOM05D004913 ORTHO05D006150 1.7e-71 273.9 341 55.4
BraA02t07829Z Brassica rapa HOM05D004913 ORTHO05D006150 1.7e-71 273.9 341 55.4
A06p47740 Brassica napus HOM05D004913 ORTHO05D006150 2.9e-71 273.1 361 52.6
BraA06t27642Z Brassica rapa HOM05D004913 ORTHO05D006150 6.4e-71 271.9 362 51.9
Aa31LG5G3520 Aethionema arabicum HOM05D004913 ORTHO05D006150 2.3e-68 263.5 198 75.3
SalBow3G1711 Salvia bowleyana HOM05D004913 ORTHO05D006150 4.3e-67 259.2 314 55.1
AagrBONN_evm.TU.Sc2ySwM_362.2200 Anthoceros agrestis HOM05D004913 ORTHO05D006150 8.1e-66 255.0 233 64.4
BcaC03g16589 Brassica carinata HOM05D004913 ORTHO05D006150 1.8e-65 253.8 205 69.8
C02p44080 Brassica napus HOM05D004913 ORTHO05D006150 1.8e-65 253.8 205 69.8
Cc03_g04640 Coffea canephora HOM05D004913 ORTHO05D006150 1.2e-64 251.1 189 75.1
unitig_0.g131 Utricularia gibba HOM05D004913 ORTHO05D006150 3.8e-63 246.1 196 68.9
SEGI_31281 Sequoiadendron giganteum HOM05D004913 ORTHO05D006150 1.4e-62 244.2 247 61.1
HPP92_014140 Vanilla planifolia HOM05D004913 ORTHO05D006150 1.1e-59 234.6 254 57.1
CDE06G2453 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 2.4e-57 226.9 245 58.8
Hund17874 Selenicereus undatus HOM05D004913 ORTHO05D006150 6.9e-57 225.3 219 60.3
ClCG05G004680 Citrullus lanatus HOM05D000979 ORTHO05D003182 1.1e-54 218.0 334 52.7
Sc13g0004930 Simmondsia chinensis HOM05D004913 ORTHO05D006150 2.4e-54 216.9 274 54.4
Pp3c2_37690 Physcomitrium patens HOM05D004913 ORTHO05D006150 1.2e-53 214.5 338 45.3
Mapoly0010s0154 Marchantia polymorpha HOM05D004913 ORTHO05D006150 1.3e-52 211.1 320 50.3
SHI00581 Sapria himalayana HOM05D004913 ORTHO05D006150 1.5e-51 207.6 337 48.1
CDE07G2030 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 2.5e-51 206.8 337 46.3
AL8G16560 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 1.3e-50 204.5 161 70.8
PSO210G2862 Papaver somniferum HOM05D004913 ORTHO05D006150 1.3e-50 204.5 200 61.0
SMO358G0388 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 6.2e-50 202.2 327 45.3
PSO238G0009 Papaver somniferum HOM05D004913 ORTHO05D006150 8.1e-50 201.8 269 50.9
TAR365G1176 Trochodendron aralioides HOM05D004913 ORTHO05D006150 3.8e-47 193.0 197 60.9
Ah.13g071540 Amaranthus hybridus HOM05D004913 ORTHO05D006150 2.4e-46 190.3 204 59.8
Zm00001eb212900 Zea mays HOM05D004913 ORTHO05D006150 5.4e-46 189.1 340 43.2
Os03g0797700 Oryza sativa ssp. japonica HOM05D004913 ORTHO05D006150 1.6e-45 187.6 294 46.3
BcaC06g34634 Brassica carinata HOM05D004913 ORTHO05D006150 1.3e-42 177.9 145 72.4
BcaC06g34635 Brassica carinata HOM05D004913 ORTHO05D006150 3.7e-26 123.2 128 60.9
CBR_g525 Chara braunii HOM05D004913 ORTHO05D006150 3.7e-26 123.2 136 52.9
Ah.13g071550 Amaranthus hybridus HOM05D004913 ORTHO05D006150 1.7e-23 114.4 97 72.2
SMO347G0406 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 2.7e-21 107.1 172 41.3
Zm00001eb034960 Zea mays HOM05D004913 ORTHO05D006150 3.4e-16 90.1 87 59.8
Atru.chr4.2281 Acer truncatum HOM05D000979 ORTHO05D003182 1.9e-14 84.3 94 54.3
Gohir.D08G197400 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.3e-10 71.6 57 70.2
Gorai.007G212000 Gossypium raimondii HOM05D004913 ORTHO05D006150 1.3e-10 71.6 57 71.9
GSVIVG01034858001 Vitis vinifera HOM05D004913 ORTHO05D006150 2.8e-10 70.5 56 67.9
FAN16G0422 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.8e-09 67.8 117 55.6
Gohir.D03G068600 Gossypium hirsutum HOM05D004913 ORTHO05D006150 3.1e-09 67.0 57 66.7
Gorai.003G091900 Gossypium raimondii HOM05D004913 ORTHO05D006150 4.1e-09 66.6 58 65.5
Cre10.g452600 Chlamydomonas reinhardtii HOM05D004913 ORTHO05D006150 9.1e-09 65.5 199 29.6
MCO11G351 Micromonas commoda HOM05D004913 ORTHO05D006150 5.9e-08 62.8 171 31.6
Zm00001eb060940 Zea mays HOM05D004913 ORTHO05D006150 7.7e-08 62.4 57 66.7


User provided reference genes

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