Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H02548 Eucalyptus grandis HOM05D004907 ORTHO05D005707 1.4e-234 815.8 403 100.0
Eucgr.H02549 Eucalyptus grandis HOM05D004907 ORTHO05D005707 2.1e-214 748.8 398 92.7
PGR119G0630 Punica granatum HOM05D004907 ORTHO05D005707 6.2e-105 385.2 367 53.7
QL03p059196 Quercus lobata HOM05D004907 ORTHO05D005707 9.9e-103 377.9 375 51.2
Manes.13G027600 Manihot esculenta HOM05D004907 ORTHO05D005707 5.5e-101 372.1 384 47.9
Prupe.1G249900 Prunus persica HOM05D004907 ORTHO05D005707 6.0e-100 368.6 376 50.0
CiPaw.06G069900 Carya illinoinensis HOM05D004907 ORTHO05D005707 1.0e-99 367.9 376 49.7
Haze_12215 Corylus avellana HOM05D004907 ORTHO05D005707 1.3e-99 367.5 373 48.0
Cfa009181 Carpinus fangiana HOM05D004907 ORTHO05D005707 5.1e-99 365.5 373 47.7
Lj6P808T27 Lonicera japonica HOM05D004907 ORTHO05D005707 2.5e-98 363.2 375 49.6
Duzib268G1138 Durio zibethinus HOM05D004907 ORTHO05D005707 4.3e-98 362.5 376 47.6
Duzib268G1696 Durio zibethinus HOM05D004907 ORTHO05D005707 9.6e-98 361.3 378 46.6
Hma1.2p1_0160F.1_g071120 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 9.6e-98 361.3 375 48.3
Gohir.D02G160600 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.6e-97 360.5 372 49.2
Gohir.D01G149900 Gossypium hirsutum HOM05D004907 ORTHO05D005707 6.2e-97 358.6 376 46.8
PGSC0003DMG400013488 Solanum tuberosum HOM05D004907 ORTHO05D005707 6.2e-97 358.6 373 45.8
Thecc.02G254700 Theobroma cacao HOM05D004907 ORTHO05D005707 1.1e-96 357.8 381 47.0
CSS0001528 Camellia sinensis var. sinensis HOM05D004907 ORTHO05D005707 1.4e-96 357.5 373 48.3
Hma1.2p1_0223F.1_g094330 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 1.8e-96 357.1 377 49.1
Nitab4.5_0015209g0010 Nicotiana tabacum HOM05D004907 ORTHO05D005707 1.8e-96 357.1 361 47.1
Sopen05g001160 Solanum pennellii HOM05D004907 ORTHO05D005707 3.1e-96 356.3 373 45.8
Gohir.A03G137500 Gossypium hirsutum HOM05D004907 ORTHO05D005707 4.0e-96 355.9 371 48.2
Gorai.002G186000 Gossypium raimondii HOM05D004907 ORTHO05D005707 6.9e-96 355.1 376 46.3
Nitab4.5_0000338g0040 Nicotiana tabacum HOM05D004907 ORTHO05D005707 2.6e-95 353.2 371 45.8
CAN.G728.4 Capsicum annuum HOM05D004907 ORTHO05D005707 3.4e-95 352.8 370 44.9
DCAR_007072 Daucus carota HOM05D004907 ORTHO05D005707 1.0e-94 351.3 373 47.7
PGR102G3060 Punica granatum HOM05D004907 ORTHO05D005707 1.3e-94 350.9 377 49.9
RcHm_v2.0_Chr4g0441991 Rosa chinensis HOM05D004907 ORTHO05D005707 1.7e-94 350.5 372 49.5
FAN22G1867 Fragaria x ananassa HOM05D004907 ORTHO05D005707 2.9e-94 349.7 394 47.5
Solyc05g005150.1 Solanum lycopersicum HOM05D004907 ORTHO05D005707 6.5e-94 348.6 373 45.3
CiPaw.05G186900 Carya illinoinensis HOM05D004907 ORTHO05D005707 1.4e-93 347.4 372 47.6
FAN17G0584 Fragaria x ananassa HOM05D004907 ORTHO05D005707 1.9e-93 347.1 375 49.1
Gorai.005G180700 Gossypium raimondii HOM05D004907 ORTHO05D005707 2.5e-93 346.7 371 47.7
FvH4_4g32970 Fragaria vesca HOM05D004907 ORTHO05D005707 3.2e-93 346.3 378 48.1
CANSAT01G1025 Cannabis sativa HOM05D004907 ORTHO05D005707 9.3e-93 344.7 365 48.5
Lsat_1_v5_gn_3_28580 Lactuca sativa HOM05D004907 ORTHO05D005707 1.6e-92 344.0 367 48.2
Lj4g0000696 Lotus japonicus HOM05D004907 ORTHO05D005707 2.1e-92 343.6 379 48.0
FAN12G3344 Fragaria x ananassa HOM05D004907 ORTHO05D005707 3.5e-92 342.8 378 47.9
Atru.chr11.2072 Acer truncatum HOM05D004907 ORTHO05D005707 1.3e-91 340.9 374 47.3
FAN07G1203 Fragaria x ananassa HOM05D004907 ORTHO05D005707 1.3e-91 340.9 375 47.7
Rhsim12G0042700 Rhododendron simsii HOM05D004907 ORTHO05D005707 1.8e-91 340.5 376 47.3
Rhsim12G0113900 Rhododendron simsii HOM05D004907 ORTHO05D005707 5.1e-91 339.0 366 49.2
MD16G1096500 Malus domestica HOM05D004907 ORTHO05D005707 4.3e-90 335.9 375 45.3
MD13G1095300 Malus domestica HOM05D004907 ORTHO05D005707 7.4e-90 335.1 374 44.9
Cfa009182 Carpinus fangiana HOM05D004907 ORTHO05D005707 1.6e-89 334.0 378 45.0
Psat5g210760 Pisum sativum HOM05D004907 ORTHO05D005707 4.8e-89 332.4 375 45.9
Gohir.A05G313700 Gossypium hirsutum HOM05D004907 ORTHO05D005707 3.1e-88 329.7 370 44.1
Cc11_g15390 Coffea canephora HOM05D004907 ORTHO05D005707 5.3e-88 328.9 371 45.8
Sc04g0009300 Simmondsia chinensis HOM05D004907 ORTHO05D005707 1.2e-87 327.8 387 44.4
Gohir.A01G160100 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.5e-87 327.4 311 49.5
MD16G1096400 Malus domestica HOM05D004907 ORTHO05D005707 1.7e-86 323.9 374 44.4
MELO3C011980.2 Cucumis melo HOM05D004907 ORTHO05D005707 1.9e-85 320.5 364 44.2
ClCG05G025500 Citrullus lanatus HOM05D004907 ORTHO05D005707 2.5e-85 320.1 374 43.6
Lj2g0022644 Lotus japonicus HOM05D004907 ORTHO05D005707 5.5e-85 318.9 364 47.0
Ciclev10031561m.g Citrus clementina HOM05D004907 ORTHO05D005707 2.7e-84 316.6 414 42.5
CsaV3_5G031400 Cucumis sativus L. HOM05D004907 ORTHO05D005707 4.6e-84 315.8 364 44.2
AUR62014077 Chenopodium quinoa HOM05D004907 ORTHO05D005707 1.3e-83 314.3 379 42.5
Gorai.009G337200 Gossypium raimondii HOM05D004907 ORTHO05D005707 2.3e-83 313.5 377 43.0
Lsat_1_v5_gn_8_154601 Lactuca sativa HOM05D004907 ORTHO05D005707 6.7e-83 312.0 373 43.2
Glyma.01G028800 Glycine max HOM05D004907 ORTHO05D005707 1.5e-82 310.8 373 44.8
AUR62005416 Chenopodium quinoa HOM05D004907 ORTHO05D005707 4.3e-82 309.3 384 42.4
Glyma.02G036400 Glycine max HOM05D004907 ORTHO05D005707 5.7e-82 308.9 371 44.2
Glyma.08G284600 Glycine max HOM05D004907 ORTHO05D005707 7.4e-82 308.5 377 44.8
Oeu001729.1 Olea europaea HOM05D004907 ORTHO05D005707 9.7e-82 308.1 372 41.9
TPR.G24774 Trifolium pratense HOM05D004907 ORTHO05D005707 1.7e-81 307.4 377 44.0
VMungo1215G1811 Vigna mungo HOM05D004907 ORTHO05D005707 2.2e-81 307.0 369 44.7
Lalb_Chr05g0216711 Lupinus albus HOM05D004907 ORTHO05D005707 2.8e-81 306.6 358 43.9
PSO782G1891 Papaver somniferum HOM05D004907 ORTHO05D005707 3.7e-81 306.2 389 41.6
Glyma.18G141000 Glycine max HOM05D004907 ORTHO05D005707 3.1e-80 303.1 378 44.4
TWI36G0219 Tripterygium wilfordii HOM05D004907 ORTHO05D005707 4.1e-80 302.8 377 45.1
Nn4g22709 Nelumbo nucifera HOM05D004907 ORTHO05D005707 5.3e-80 302.4 383 43.3
TAR374G1110 Trochodendron aralioides HOM05D004907 ORTHO05D005707 2.0e-79 300.4 367 41.1
Ca_03137_v3 Cicer arietinum L. HOM05D004907 ORTHO05D005707 4.5e-79 299.3 367 42.5
PSO170G1656 Papaver somniferum HOM05D004907 ORTHO05D005707 4.5e-79 299.3 375 42.4
Actinidia27794 Actinidia chinensis HOM05D004907 ORTHO05D005707 5.9e-79 298.9 375 42.7
PSO063G4965 Papaver somniferum HOM05D004907 ORTHO05D005707 1.0e-78 298.1 404 39.6
MSTRG.7910 Avicennia marina HOM05D004907 ORTHO05D005707 5.0e-78 295.8 395 42.3
Medtr8g069800 Medicago truncatula HOM05D004907 ORTHO05D005707 8.5e-78 295.0 370 42.2
Oeu056415.1 Olea europaea HOM05D004907 ORTHO05D005707 2.5e-77 293.5 380 38.4
HanXRQChr06g0173591 Helianthus annuus HOM05D004907 ORTHO05D005707 3.2e-77 293.1 374 42.8
Phvul.003G062300 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 3.2e-77 293.1 375 42.9
PSO170G6868 Papaver somniferum HOM05D004907 ORTHO05D005707 2.1e-76 290.4 399 39.6
PSO441G0001 Papaver somniferum HOM05D004907 ORTHO05D005707 2.1e-76 290.4 399 39.6
Potri.010G042900 Populus trichocarpa HOM05D004907 ORTHO05D005707 2.1e-76 290.4 388 41.8
Sabra10G0024600 Salix brachista HOM05D004907 ORTHO05D005707 7.9e-76 288.5 401 41.1
THA.LOC104822976 Tarenaya hassleriana HOM05D004907 ORTHO05D005707 7.9e-76 288.5 375 44.3
Migut.L01466 Erythranthe guttata HOM05D004907 ORTHO05D005707 1.1e-74 284.6 370 43.5
MSTRG.2405 Avicennia marina HOM05D004907 ORTHO05D005707 1.5e-74 284.3 375 44.0
PSO144G0054 Papaver somniferum HOM05D004907 ORTHO05D005707 1.3e-73 281.2 400 39.2
Psat2g106360 Pisum sativum HOM05D004907 ORTHO05D005707 1.1e-72 278.1 372 41.9
SalBow2G1155 Salvia bowleyana HOM05D004907 ORTHO05D005707 1.4e-72 277.7 365 43.6
Thecc.02G254800 Theobroma cacao HOM05D004907 ORTHO05D005707 2.4e-72 276.9 376 41.8
Oeu056417.1 Olea europaea HOM05D004907 ORTHO05D005707 3.1e-72 276.6 370 40.5
SalBow3G2985 Salvia bowleyana HOM05D004907 ORTHO05D005707 1.2e-71 274.6 375 43.7
Medtr5g043750 Medicago truncatula HOM05D004907 ORTHO05D005707 1.5e-71 274.2 363 40.5
Aqoxy3G02876 Aquilegia oxysepala HOM05D004907 ORTHO05D005707 2.9e-70 270.0 359 37.9
GSVIVG01013786001 Vitis vinifera HOM05D004907 ORTHO05D005707 5.0e-70 269.2 269 45.7
Dinv15270 Davidia involucrata HOM05D004907 ORTHO05D005707 3.2e-69 266.5 256 49.6
Medtr5g033880 Medicago truncatula HOM05D004907 ORTHO05D005707 3.2e-69 266.5 373 40.8
Phvul.002G064500 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 5.5e-69 265.8 249 52.6
A09p41240 Brassica napus HOM05D004907 ORTHO05D005707 1.6e-68 264.2 374 40.1
Haze_12216 Corylus avellana HOM05D004907 ORTHO05D005707 1.6e-68 264.2 374 39.8
SGA_v2.0_scaffold63G21708 Striga asiatica HOM05D004907 ORTHO05D005707 2.7e-68 263.5 375 42.1
BraA09t39619Z Brassica rapa HOM05D004907 ORTHO05D005707 3.6e-68 263.1 378 39.4
COL.COLO4_24215 Corchorus olitorius HOM05D004907 ORTHO05D005707 3.6e-68 263.1 266 47.0
ClCG08G017860 Citrullus lanatus HOM05D002061 ORTHO05D005707 2.3e-67 260.4 374 42.2
Thhalv10007835m.g Eutrema salsugineum HOM05D004907 ORTHO05D005707 2.3e-67 260.4 385 39.0
Peaxi162Scf00158g00003 Petunia axillaris HOM05D004907 ORTHO05D005707 2.3e-67 260.4 268 44.4
AT1G23390 Arabidopsis thaliana HOM05D004907 ORTHO05D005707 8.8e-67 258.5 381 39.6
C05p22690 Brassica napus HOM05D004907 ORTHO05D005707 2.0e-66 257.3 388 38.4
BolC5t30967H Brassica oleracea HOM05D004907 ORTHO05D005707 2.6e-66 256.9 388 38.4
CDE06G1150 Ceratophyllum demersum HOM05D004907 ORTHO05D005707 4.4e-66 256.1 321 39.6
BcaC05g26256 Brassica carinata HOM05D004907 ORTHO05D005707 7.4e-66 255.4 365 39.5
Ah.03g132850 Amaranthus hybridus HOM05D000168 ORTHO05D000811 2.8e-65 253.4 295 43.1
AL1G37180 Arabidopsis lyrata HOM05D004907 ORTHO05D005707 6.3e-65 252.3 385 39.0
Aa31LG7G7420 Aethionema arabicum HOM05D004907 ORTHO05D005707 1.1e-64 251.5 370 39.2
Hund25371 Selenicereus undatus HOM05D004907 ORTHO05D005707 3.1e-64 250.0 367 39.2
BcaB07g32334 Brassica carinata HOM05D004907 ORTHO05D005707 4.1e-64 249.6 390 38.5
Oeu055460.1 Olea europaea HOM05D004907 ORTHO05D005707 7.0e-64 248.8 377 39.3
Carub.0001s2297 Capsella rubella HOM05D004907 ORTHO05D005707 9.1e-64 248.4 377 39.3
CARHR023830 Cardamine hirsuta HOM05D004907 ORTHO05D005707 1.3e-62 244.6 380 38.2
Sp1g20830 Schrenkiella parvula HOM05D004907 ORTHO05D005707 2.9e-62 243.4 384 38.5
Sed0025966 Sechium edule HOM05D002061 ORTHO05D005707 3.8e-62 243.0 396 37.1
Sed0027759 Sechium edule HOM05D004907 ORTHO05D005707 5.0e-62 242.7 334 40.1
Gohir.D05G315200 Gossypium hirsutum HOM05D004907 ORTHO05D005707 6.1e-60 235.7 235 48.9
Actinidia08149 Actinidia chinensis HOM05D004907 ORTHO05D005707 3.3e-58 229.9 169 59.8
Lalb_Chr09g0326261 Lupinus albus HOM05D004907 ORTHO05D005707 4.2e-53 213.0 353 36.0
Oeu056728.1 Olea europaea HOM05D004907 ORTHO05D005707 4.4e-50 203.0 281 39.1
PSO478G2945 Papaver somniferum HOM05D004907 ORTHO05D005707 1.0e-46 191.8 172 51.2
PSO357G0455 Papaver somniferum HOM05D004907 ORTHO05D005707 3.8e-46 189.9 229 42.8
EL10Ac6g13709 Beta vulgaris HOM05D004907 ORTHO05D005707 1.9e-45 187.6 224 42.9
ATR1091G111 Amborella trichopoda HOM05D004907 ORTHO05D005707 2.1e-44 184.1 368 32.6
COL.COLO4_24217 Corchorus olitorius HOM05D004907 ORTHO05D005707 2.1e-36 157.5 204 40.2
Zm00001eb155550 Zea mays HOM05D004907 ORTHO05D005707 2.1e-36 157.5 399 32.8
Os09g0292900 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 7.5e-34 149.1 398 31.2
Nn3g16812 Nelumbo nucifera HOM05D004907 ORTHO05D005707 1.7e-30 137.9 190 41.1
Os02g0465600 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 2.6e-26 124.0 230 38.3
MD13G1280300 Malus domestica HOM05D004907 ORTHO05D005707 3.4e-26 123.6 188 35.6
HPP92_008048 Vanilla planifolia HOM05D004907 ORTHO05D005707 1.7e-25 121.3 372 30.6
Os01g0704300 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 1.1e-21 108.6 258 31.8
unitig_8.g2924 Utricularia gibba HOM05D004907 ORTHO05D005707 1.9e-21 107.8 115 46.1
Cfa002555 Carpinus fangiana HOM05D007853 ORTHO05D009873 3.3e-21 107.1 347 28.8
Oeu015462.1 Olea europaea HOM05D007853 ORTHO05D009873 5.6e-21 106.3 377 26.0
Actinidia09494 Actinidia chinensis HOM05D007853 ORTHO05D009873 1.2e-20 105.1 387 26.1
Mapoly0119s0021 Marchantia polymorpha HOM05D007853 ORTHO05D009873 8.1e-20 102.4 362 26.0
Hma1.2p1_1061F.1_g253350 Hydrangea macrophylla HOM05D007853 ORTHO05D009873 1.8e-19 101.3 371 27.0
Mapoly0119s0024 Marchantia polymorpha HOM05D007853 ORTHO05D009873 2.3e-19 100.9 323 26.6
TPR.G21504 Trifolium pratense HOM05D004907 ORTHO05D005707 2.3e-19 100.9 143 38.5
TWI18G0437 Tripterygium wilfordii HOM05D007853 ORTHO05D009873 2.3e-19 100.9 351 28.8
TPR.G15291 Trifolium pratense HOM05D007853 ORTHO05D009873 8.9e-19 99.0 374 25.1
SEGI_02257 Sequoiadendron giganteum HOM05D007853 ORTHO05D009873 1.2e-18 98.6 340 26.8
MBI10_g16828_MAGBIO Magnolia biondii HOM05D007853 ORTHO05D009873 4.4e-18 96.7 372 26.6
SEGI_08843 Sequoiadendron giganteum HOM05D007853 ORTHO05D009873 9.9e-18 95.5 233 27.9
unitig_8.g2923 Utricularia gibba HOM05D004907 ORTHO05D005707 9.9e-18 95.5 78 53.8
BcaB06g26693 Brassica carinata HOM05D007853 ORTHO05D009873 1.7e-17 94.7 379 26.6
Ca_07539_v3 Cicer arietinum L. HOM05D007853 ORTHO05D009873 3.7e-17 93.6 363 25.9
ClCG09G009130 Citrullus lanatus HOM05D007853 ORTHO05D009873 3.7e-17 93.6 342 27.5
Psat3g143800 Pisum sativum HOM05D007853 ORTHO05D009873 3.7e-17 93.6 349 26.1
AL3G40490 Arabidopsis lyrata HOM05D007853 ORTHO05D009873 8.3e-17 92.4 338 25.4
Pp3c10_6380 Physcomitrium patens HOM05D007853 ORTHO05D009873 1.9e-16 91.3 281 27.8
Manes.12G041900 Manihot esculenta HOM05D007853 ORTHO05D009873 2.4e-16 90.9 352 26.1
Nn2g13937 Nelumbo nucifera HOM05D004907 ORTHO05D005707 3.2e-16 90.5 79 53.2
C07p11280 Brassica napus HOM05D007853 ORTHO05D009873 4.1e-16 90.1 374 26.5
BcaC06g35750 Brassica carinata HOM05D007853 ORTHO05D009873 5.4e-16 89.7 383 26.1
BolC7t41605H Brassica oleracea HOM05D007853 ORTHO05D009873 5.4e-16 89.7 383 26.1
PGR044G1509 Punica granatum HOM05D007853 ORTHO05D009873 9.2e-16 89.0 400 26.5
Medtr0197s0070 Medicago truncatula HOM05D007853 ORTHO05D009873 1.2e-15 88.6 327 25.1
Medtr7g059040 Medicago truncatula HOM05D007853 ORTHO05D009873 1.2e-15 88.6 327 25.1
A07p07510 Brassica napus HOM05D007853 ORTHO05D009873 2.1e-15 87.8 380 25.3
BraA07t28542Z Brassica rapa HOM05D007853 ORTHO05D009873 2.1e-15 87.8 380 25.3
Cfa009183 Carpinus fangiana HOM05D004907 ORTHO05D005707 3.5e-15 87.0 133 34.6
RcHm_v2.0_Chr6g0285141 Rosa chinensis HOM05D007853 ORTHO05D009873 3.5e-15 87.0 352 26.7
MD05G1178400 Malus domestica HOM05D007853 ORTHO05D009873 6.0e-15 86.3 320 28.1
DCAR_000536 Daucus carota HOM05D007853 ORTHO05D009873 1.0e-14 85.5 331 26.3
Nn2g13938 Nelumbo nucifera HOM05D004907 ORTHO05D005707 1.0e-14 85.5 92 46.7
Pp3c2_14180 Physcomitrium patens HOM05D007853 ORTHO05D009873 2.3e-14 84.3 348 23.9
HanXRQChr01g0014671 Helianthus annuus HOM05D007853 ORTHO05D009873 3.0e-14 84.0 343 24.2
Glyma.08G356100 Glycine max HOM05D007853 ORTHO05D009873 5.1e-14 83.2 360 24.4
FAN15G1839 Fragaria x ananassa HOM05D007853 ORTHO05D009873 6.6e-14 82.8 397 23.9
Pp3c19_15800 Physcomitrium patens HOM05D007753 ORTHO05D009385 3.6e-12 77.0 363 23.4
SMO364G0049 Selaginella moellendorffii HOM05D001337 ORTHO05D008829 4.6e-07 60.1 194 29.4
SEGI_31464 Sequoiadendron giganteum HOM05D004907 ORTHO05D005707 2.3e-06 57.8 80 37.5
Pp3c3_33090 Physcomitrium patens HOM05D030659 ORTHO05D009385 5.1e-06 56.6 180 25.6
SEGI_19761 Sequoiadendron giganteum HOM05D041656 ORTHO05D009873 5.1e-06 56.6 53 39.6
SEGI_28857 Sequoiadendron giganteum HOM05D041656 ORTHO05D009873 5.1e-06 56.6 53 39.6


User provided reference genes

Program Settings