Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 2.0e-92 342.4 175 100.0
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 3.9e-88 328.2 175 96.6
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 3.7e-78 295.0 177 85.3
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 1.2e-76 290.0 177 84.2
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 2.9e-75 285.4 176 80.7
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 3.8e-75 285.0 176 81.8
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 6.5e-75 284.3 177 81.4
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 8.5e-75 283.9 176 80.1
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 8.5e-75 283.9 176 81.2
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 7.2e-74 280.8 176 81.2
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 1.6e-73 279.6 176 80.7
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 2.7e-73 278.9 176 81.2
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 3.6e-73 278.5 176 81.2
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 3.6e-73 278.5 178 79.2
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 1.4e-72 276.6 180 79.4
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 1.4e-72 276.6 178 77.5
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 1.8e-72 276.2 176 80.7
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 2.3e-72 275.8 176 80.7
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 5.1e-72 274.6 178 78.7
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 8.8e-72 273.9 181 77.9
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 1.5e-71 273.1 176 77.8
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 1.5e-71 273.1 178 77.5
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 2.6e-71 272.3 177 77.4
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 5.7e-71 271.2 178 75.8
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 7.4e-71 270.8 175 80.0
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 9.7e-71 270.4 174 77.6
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 9.7e-71 270.4 177 77.4
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 1.7e-70 269.6 165 81.2
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 3.7e-70 268.5 178 77.5
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 4.8e-70 268.1 175 78.3
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 6.3e-70 267.7 176 77.8
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 8.2e-70 267.3 178 77.5
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 1.4e-69 266.5 176 77.8
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 1.8e-69 266.2 173 77.5
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.8e-69 266.2 173 77.5
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 1.8e-69 266.2 173 79.2
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 2.4e-69 265.8 179 76.5
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 2.4e-69 265.8 179 76.5
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 5.3e-69 264.6 173 76.9
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 5.3e-69 264.6 176 77.8
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 7.0e-69 264.2 176 74.4
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.2e-68 263.5 173 76.9
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 1.5e-68 263.1 181 75.1
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 3.5e-68 261.9 177 76.3
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 4.5e-68 261.5 178 75.8
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 4.5e-68 261.5 178 75.8
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 5.9e-68 261.2 177 75.7
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 5.9e-68 261.2 172 75.6
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 5.9e-68 261.2 177 77.4
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 7.7e-68 260.8 174 75.3
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 1.0e-67 260.4 166 78.9
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 1.3e-67 260.0 176 74.4
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.2e-67 259.2 178 74.7
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 3.8e-67 258.5 177 76.8
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 1.1e-66 256.9 176 73.3
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 1.1e-66 256.9 172 73.8
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 1.5e-66 256.5 177 75.1
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 3.2e-66 255.4 180 71.1
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 5.5e-66 254.6 172 74.4
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 7.2e-66 254.2 173 76.3
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 9.4e-66 253.8 178 73.6
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 1.2e-65 253.4 178 73.6
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 1.2e-65 253.4 178 73.6
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 2.7e-65 252.3 178 73.0
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 2.7e-65 252.3 178 73.0
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 6.1e-65 251.1 182 71.4
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 6.1e-65 251.1 181 72.9
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 1.0e-64 250.4 182 71.4
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 1.8e-64 249.6 177 70.6
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 1.8e-64 249.6 181 70.2
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 1.8e-64 249.6 179 70.4
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 1.8e-64 249.6 179 70.4
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 2.3e-64 249.2 174 71.8
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 2.3e-64 249.2 164 76.2
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 3.0e-64 248.8 168 73.8
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 3.0e-64 248.8 177 71.8
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 3.0e-64 248.8 174 71.8
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 3.0e-64 248.8 174 73.6
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 3.0e-64 248.8 176 70.5
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 3.0e-64 248.8 179 70.4
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 5.2e-64 248.1 175 72.6
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 5.2e-64 248.1 179 70.4
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 6.7e-64 247.7 180 72.2
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 6.7e-64 247.7 168 73.2
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 6.7e-64 247.7 172 73.3
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 6.7e-64 247.7 181 70.7
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 8.8e-64 247.3 177 69.5
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 8.8e-64 247.3 179 70.4
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 7.4e-63 244.2 178 70.8
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 7.4e-63 244.2 178 70.8
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 1.3e-62 243.4 178 69.7
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 3.7e-62 241.9 175 70.9
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 4.8e-62 241.5 177 71.8
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 6.3e-62 241.1 177 70.1
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 8.2e-62 240.7 151 78.8
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 5.3e-61 238.0 176 67.6
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 7.0e-61 237.7 180 68.3
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 7.0e-61 237.7 181 68.0
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 7.0e-61 237.7 178 69.1
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 7.0e-61 237.7 176 68.2
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 2.0e-60 236.1 172 70.3
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 2.6e-60 235.7 169 69.8
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 3.5e-60 235.3 180 70.6
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 4.5e-60 235.0 171 68.4
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 7.7e-60 234.2 176 68.8
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 2.9e-59 232.3 176 66.5
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 2.9e-59 232.3 187 64.2
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 2.9e-59 232.3 177 68.9
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 3.8e-59 231.9 171 69.6
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 3.8e-59 231.9 185 69.2
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 5.0e-59 231.5 181 66.9
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 5.0e-59 231.5 182 65.9
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 6.5e-59 231.1 177 67.2
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 8.5e-59 230.7 176 67.0
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 1.1e-58 230.3 176 67.6
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 5.5e-58 228.0 175 69.7
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 1.6e-57 226.5 170 67.6
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 4.7e-57 224.9 180 66.1
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 1.4e-56 223.4 148 72.3
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 1.8e-56 223.0 167 68.3
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 5.2e-56 221.5 172 66.9
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 1.5e-55 219.9 167 68.3
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 1.5e-55 219.9 172 65.7
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 1.5e-55 219.9 251 50.2
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 4.4e-55 218.4 172 65.1
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 5.7e-55 218.0 168 66.1
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 6.3e-54 214.5 157 73.2
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 1.1e-53 213.8 183 66.1
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 2.0e-52 209.5 158 70.3
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 3.5e-52 208.8 179 62.6
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 3.6e-49 198.7 121 77.7
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 4.4e-47 191.8 174 58.0
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 4.9e-46 188.3 142 63.4
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 7.0e-45 184.5 156 61.5
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 9.1e-45 184.1 180 60.0
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 3.5e-44 182.2 147 67.3
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 1.7e-43 179.9 181 58.6
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 2.3e-43 179.5 150 58.0
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 3.6e-41 172.2 181 52.5
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 5.4e-37 158.3 97 76.3
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.3e-35 153.7 173 50.9
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.9e-34 149.8 86 81.4
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 1.6e-33 146.7 175 46.9
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.8e-33 146.0 105 67.6
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 6.2e-33 144.8 128 61.7
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 3.4e-31 139.0 85 77.6
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 2.2e-30 136.3 110 63.6
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 1.1e-29 134.0 112 63.4
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 4.1e-29 132.1 129 57.4
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 1.3e-27 127.1 127 55.9
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 2.1e-25 119.8 124 53.2
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 1.7e-22 110.2 125 44.0
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 4.1e-21 105.5 89 62.9
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 4.1e-21 105.5 89 62.9
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 4.1e-21 105.5 105 46.7
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 4.6e-20 102.1 84 65.5
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 6.0e-20 101.7 90 60.0
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 3.6e-17 92.4 146 37.7
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 8.4e-14 81.3 46 80.4
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 5.1e-11 72.0 89 39.3
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 6.6e-11 71.6 60 61.7
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 7.3e-10 68.2 79 48.1
ECA238G1237 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.2e-09 67.4 191 31.9
Nitab4.5_0018373g0020 Nicotiana tabacum HOM05D000428 ORTHO05D000582 1.8e-08 63.5 84 45.2
CARHR038570 Cardamine hirsuta HOM05D004222 ORTHO05D004982 3.4e-07 59.3 79 46.8
Cc01_g11080 Coffea canephora HOM05D004222 ORTHO05D154025 9.9e-07 57.8 109 35.8


User provided reference genes

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