Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H01945 Eucalyptus grandis HOM05D004524 ORTHO05D005477 0.0e+00 2858.2 1433 100.0
PGR102G0585 Punica granatum HOM05D004524 ORTHO05D005477 0.0e+00 1814.3 1441 64.2
Cfa004228 Carpinus fangiana HOM05D004524 ORTHO05D005477 0.0e+00 1763.0 1439 61.9
Prupe.7G144700 Prunus persica HOM05D004524 ORTHO05D005477 0.0e+00 1751.9 1449 60.5
Atru.chr3.464 Acer truncatum HOM05D004524 ORTHO05D005477 0.0e+00 1745.3 1439 60.9
CiPaw.01G027900 Carya illinoinensis HOM05D004524 ORTHO05D005477 0.0e+00 1742.2 1443 61.3
GSVIVG01005092001 Vitis vinifera HOM05D004524 ORTHO05D005477 0.0e+00 1719.1 1465 59.3
MD02G1159300 Malus domestica HOM05D004524 ORTHO05D005477 0.0e+00 1718.7 1443 59.7
Manes.13G131650 Manihot esculenta HOM05D004524 ORTHO05D005477 0.0e+00 1718.4 1442 60.3
RcHm_v2.0_Chr2g0103341 Rosa chinensis HOM05D004524 ORTHO05D005477 0.0e+00 1703.0 1446 60.1
TWI53G1766 Tripterygium wilfordii HOM05D004524 ORTHO05D005477 0.0e+00 1700.6 1441 59.4
Ciclev10024678m.g Citrus clementina HOM05D004524 ORTHO05D005477 0.0e+00 1689.9 1444 59.7
Potri.007G034900 Populus trichocarpa HOM05D004524 ORTHO05D005477 0.0e+00 1689.9 1443 59.3
TAR628G0958 Trochodendron aralioides HOM05D004524 ORTHO05D005477 0.0e+00 1681.0 1451 59.1
Thecc.01G046200 Theobroma cacao HOM05D004524 ORTHO05D005477 0.0e+00 1678.7 1442 59.1
Sabra07G0030300 Salix brachista HOM05D004524 ORTHO05D005477 0.0e+00 1674.1 1476 58.0
QL06p044160 Quercus lobata HOM05D004524 ORTHO05D005477 0.0e+00 1667.5 1368 62.1
Duzib187G1201 Durio zibethinus HOM05D004524 ORTHO05D005477 0.0e+00 1662.9 1455 58.8
Gohir.D11G194900 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 1658.3 1440 58.8
Gorai.007G208400 Gossypium raimondii HOM05D004524 ORTHO05D005477 0.0e+00 1656.7 1440 58.7
FAN19G0876 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 1655.2 1447 58.9
CANSAT01G1357 Cannabis sativa HOM05D004524 ORTHO05D005477 0.0e+00 1654.4 1440 59.0
FAN23G1697 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 1630.9 1448 58.1
Nn5g29420 Nelumbo nucifera HOM05D004524 ORTHO05D005477 0.0e+00 1623.2 1450 56.0
FvH4_1g14580 Fragaria vesca HOM05D004524 ORTHO05D005477 0.0e+00 1620.5 1449 57.9
Gohir.A11G188400 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 1605.1 1441 57.5
Lj4g0019712 Lotus japonicus HOM05D004524 ORTHO05D005477 0.0e+00 1600.5 1444 56.4
Haze_15172 Corylus avellana HOM05D004524 ORTHO05D005477 0.0e+00 1585.9 1282 63.0
Glyma.16G144200 Glycine max HOM05D004524 ORTHO05D005477 0.0e+00 1577.0 1443 55.9
Lalb_Chr05g0226951 Lupinus albus HOM05D004524 ORTHO05D005477 0.0e+00 1575.8 1444 55.3
PSO170G3447 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 1575.1 1453 54.8
Medtr8g078970 Medicago truncatula HOM05D004524 ORTHO05D005477 0.0e+00 1567.4 1445 55.8
HanXRQChr12g0378491 Helianthus annuus HOM05D004524 ORTHO05D005477 0.0e+00 1565.4 1440 55.9
THA.LOC104827123 Tarenaya hassleriana HOM05D004524 ORTHO05D005477 0.0e+00 1565.4 1449 55.0
Ca_22222_v3 Cicer arietinum L. HOM05D004524 ORTHO05D005477 0.0e+00 1563.1 1445 55.8
Psat0s4220g0040 Pisum sativum HOM05D004524 ORTHO05D005477 0.0e+00 1563.1 1442 55.5
AL5G30510 Arabidopsis lyrata HOM05D004524 ORTHO05D005477 0.0e+00 1555.4 1448 54.3
arahy.Tifrunner.gnm1.ann1.S59764 Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 1555.4 1467 55.0
Cc07_g05430 Coffea canephora HOM05D004524 ORTHO05D005477 0.0e+00 1555.0 1454 54.2
Aqoxy5G01755 Aquilegia oxysepala HOM05D004524 ORTHO05D005477 0.0e+00 1551.6 1451 54.1
Carub.0005s1670 Capsella rubella HOM05D004524 ORTHO05D005477 0.0e+00 1550.4 1448 54.3
Rhsim08G0108900 Rhododendron simsii HOM05D004524 ORTHO05D005477 0.0e+00 1543.9 1705 49.3
Sc16g0001530 Simmondsia chinensis HOM05D004524 ORTHO05D005477 0.0e+00 1542.3 1453 55.5
AT3G50380 Arabidopsis thaliana HOM05D004524 ORTHO05D005477 0.0e+00 1541.2 1448 53.8
TPR.G11249 Trifolium pratense HOM05D004524 ORTHO05D005477 0.0e+00 1538.1 1432 55.8
C01p29870 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 1535.0 1448 54.1
A01p24160 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 1532.7 1447 54.1
BraA01t02328Z Brassica rapa HOM05D004524 ORTHO05D005477 0.0e+00 1532.7 1447 54.1
Thhalv10027614m.g Eutrema salsugineum HOM05D004524 ORTHO05D005477 0.0e+00 1532.3 1451 53.8
BcaB05g23215 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 1523.1 1447 53.8
Aa31LG4G18620 Aethionema arabicum HOM05D004524 ORTHO05D005477 0.0e+00 1521.1 1475 53.0
PSO700G0043 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 1517.3 1449 53.8
Migut.H00497 Erythranthe guttata HOM05D004524 ORTHO05D005477 0.0e+00 1515.4 1445 53.9
BolC1t02927H Brassica oleracea HOM05D004524 ORTHO05D005477 0.0e+00 1511.9 1432 53.9
Hund14111 Selenicereus undatus HOM05D004524 ORTHO05D005477 0.0e+00 1511.1 1453 54.3
Sopen02g034830 Solanum pennellii HOM05D004524 ORTHO05D005477 0.0e+00 1509.6 1457 52.8
SalBow1G7798 Salvia bowleyana HOM05D004524 ORTHO05D005477 0.0e+00 1506.1 1452 53.6
Lsat_1_v5_gn_3_94181 Lactuca sativa HOM05D004524 ORTHO05D005477 0.0e+00 1503.4 1432 54.4
EL10Ac6g14835 Beta vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 1503.0 1463 53.1
arahy.Tifrunner.gnm1.ann1.7NUW0V Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 1495.3 1434 54.7
MSTRG.23802 Avicennia marina HOM05D004524 ORTHO05D005477 0.0e+00 1493.8 1451 53.4
Peaxi162Scf00535g00735 Petunia axillaris HOM05D004524 ORTHO05D005477 0.0e+00 1491.1 1442 52.8
AUR62003242 Chenopodium quinoa HOM05D004524 ORTHO05D005477 0.0e+00 1490.7 1438 52.4
FAN26G3430 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 1490.7 1442 54.9
Sed0025355 Sechium edule HOM05D004524 ORTHO05D005477 0.0e+00 1484.5 1443 54.0
ECA246G4564 Erigeron canadensis HOM05D004524 ORTHO05D005477 0.0e+00 1483.8 1436 53.8
BcaC09g50025 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 1483.0 1448 52.8
vmacro17888 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 0.0e+00 1477.6 1372 56.6
Ah.02g126100 Amaranthus hybridus HOM05D004524 ORTHO05D005477 0.0e+00 1475.7 1473 52.1
VMungo0251G2856 Vigna mungo HOM05D004524 ORTHO05D005477 0.0e+00 1468.8 1331 55.9
MELO3C007516.2 Cucumis melo HOM05D004524 ORTHO05D005477 0.0e+00 1451.8 1443 52.9
CsaV3_6G042750 Cucumis sativus L. HOM05D004524 ORTHO05D005477 0.0e+00 1441.0 1446 52.6
CAN.G836.23 Capsicum annuum HOM05D004524 ORTHO05D005477 0.0e+00 1428.7 1342 54.5
CDE01G0297 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 0.0e+00 1427.5 1455 51.3
Solyc02g090130.4 Solanum lycopersicum HOM05D004524 ORTHO05D005477 0.0e+00 1414.1 1447 51.1
SGA_v2.0_scaffold15G07211 Striga asiatica HOM05D004524 ORTHO05D005477 0.0e+00 1390.6 1505 49.7
FAN28G0821 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 1387.9 1223 58.8
CARHR159880 Cardamine hirsuta HOM05D004524 ORTHO05D005477 0.0e+00 1365.1 1350 53.3
Dinv26770 Davidia involucrata HOM05D004524 ORTHO05D005477 0.0e+00 1352.0 1191 57.9
ATR0733G201 Amborella trichopoda HOM05D004524 ORTHO05D005477 0.0e+00 1350.9 1455 48.9
Phvul.003G249100 Phaseolus vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 1333.2 1255 53.9
AUR62027230 Chenopodium quinoa HOM05D004524 ORTHO05D005477 0.0e+00 1275.8 1206 53.8
HPP92_018815 Vanilla planifolia HOM05D004524 ORTHO05D005477 0.0e+00 1269.2 1464 46.4
Zm00001eb030660 Zea mays HOM05D004524 ORTHO05D005477 0.0e+00 1249.2 1420 46.8
Nitab4.5_0000108g0200 Nicotiana tabacum HOM05D004524 ORTHO05D005477 0.0e+00 1229.5 1349 49.6
Sp5g11790 Schrenkiella parvula HOM05D004524 ORTHO05D005477 0.0e+00 1122.5 1138 50.4
unitig_62.g23407 Utricularia gibba HOM05D004524 ORTHO05D005477 1.2e-304 1050.4 1431 41.9
DCAR_025673 Daucus carota HOM05D004524 ORTHO05D005477 2.9e-282 976.1 1043 48.4
Mapoly0053s0053 Marchantia polymorpha HOM05D004524 ORTHO05D005477 3.8e-282 975.7 1514 37.7
SEGI_08749 Sequoiadendron giganteum HOM05D004524 ORTHO05D005477 6.8e-279 964.9 1312 41.5
Pp3c8_13080 Physcomitrium patens HOM05D004524 ORTHO05D005477 1.7e-277 960.3 1498 38.3
AagrBONN_evm.TU.Sc2ySwM_344.2829 Anthoceros agrestis HOM05D004524 ORTHO05D005477 1.2e-254 884.4 1381 38.0
Actinidia30986 Actinidia chinensis HOM05D004524 ORTHO05D005477 2.7e-235 820.1 595 68.4
Nitab4.5_0001014g0170 Nicotiana tabacum HOM05D004524 ORTHO05D005477 1.3e-210 738.0 904 44.5
ClCG01G016470 Citrullus lanatus HOM05D004524 ORTHO05D005477 4.2e-196 689.9 799 45.7
MBI16_g31332_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 6.3e-192 676.0 662 54.4
ClCG01G016450 Citrullus lanatus HOM05D004524 ORTHO05D005477 2.4e-151 541.2 461 61.0
MBI16_g31331_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 2.2e-136 491.5 708 40.1
Lj7A15G49 Lonicera japonica HOM05D004524 ORTHO05D005477 1.3e-125 455.7 487 51.7
CBR_g51675 Chara braunii HOM05D004524 ORTHO05D005477 5.8e-113 413.7 449 46.5
Migut.H00499 Erythranthe guttata HOM05D004524 ORTHO05D005477 1.8e-98 365.5 335 58.8
Dinv26771 Davidia involucrata HOM05D004524 ORTHO05D005477 5.5e-87 327.4 219 72.6
COL.COLO4_22187 Corchorus olitorius HOM05D004524 ORTHO05D005477 7.7e-81 307.0 225 66.7
Cpa.g.sc15.77 Carica papaya HOM05D004524 ORTHO05D005477 3.2e-71 275.0 427 38.4
ClCG01G016440 Citrullus lanatus HOM05D004524 ORTHO05D005477 4.4e-60 238.0 212 59.9
FAN08G2497 Fragaria x ananassa HOM05D007595 ORTHO05D009570 2.7e-57 228.8 191 62.8
HPP92_018739 Vanilla planifolia HOM05D004524 ORTHO05D005477 4.7e-54 218.0 268 41.0
AUR62027229 Chenopodium quinoa HOM05D004524 ORTHO05D005477 2.4e-50 205.7 244 44.3
Zm00001eb383180 Zea mays HOM05D004524 ORTHO05D005477 1.7e-48 199.5 157 61.8
Zm00001eb381690 Zea mays HOM05D004524 ORTHO05D005477 2.3e-48 199.1 147 64.6
Zm00001eb381740 Zea mays HOM05D004524 ORTHO05D005477 2.9e-48 198.7 146 65.1
FvH4_5g25081 Fragaria vesca HOM05D004524 ORTHO05D005477 1.9e-47 196.1 154 65.6
GSVIVG01005094001 Vitis vinifera HOM05D004524 ORTHO05D005477 4.0e-45 188.3 105 85.7
COL.COLO4_22188 Corchorus olitorius HOM05D004524 ORTHO05D005477 2.1e-38 166.0 449 29.8
CBR_g36529 Chara braunii HOM05D000019 ORTHO05D000002 1.8e-34 152.9 631 23.6
FAN18G1633 Fragaria x ananassa HOM05D004524 ORTHO05D005477 4.1e-34 151.8 173 50.9
Duzib147G0073 Durio zibethinus HOM05D004524 ORTHO05D005477 3.6e-30 138.7 123 56.9
Cpa.g.sc15.76 Carica papaya HOM05D004524 ORTHO05D005477 2.9e-27 129.0 132 54.5
HPP92_018740 Vanilla planifolia HOM05D004524 ORTHO05D005477 3.2e-26 125.6 265 33.2
CAN.G836.24 Capsicum annuum HOM05D004524 ORTHO05D005477 6.0e-25 121.3 110 47.3
Migut.H00498 Erythranthe guttata HOM05D004524 ORTHO05D005477 6.6e-24 117.9 73 74.0
VMungo0251G1417 Vigna mungo HOM05D004524 ORTHO05D005477 4.0e-21 108.6 107 47.7
GSVIVG01006100001 Vitis vinifera HOM05D004524 ORTHO05D005477 8.9e-21 107.5 61 83.6
CARHR159890 Cardamine hirsuta HOM05D004524 ORTHO05D005477 3.4e-20 105.5 107 43.9
Haze_15173 Corylus avellana HOM05D004524 ORTHO05D005477 1.1e-18 100.5 76 52.6
vmacro17889 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 2.5e-15 89.4 76 51.3
Sc03g0009100 Simmondsia chinensis HOM05D004524 ORTHO05D005477 1.6e-14 86.7 102 46.1
Lsat_1_v5_gn_8_103301 Lactuca sativa HOM05D004524 ORTHO05D005477 3.6e-14 85.5 119 43.7
Oeu032928.5 Olea europaea HOM05D004524 ORTHO05D005477 8.1e-14 84.3 76 46.1
CBR_g18614 Chara braunii HOM05D002653 ORTHO05D002623 8.9e-13 80.9 413 24.7
EL10As4g23458 Beta vulgaris HOM05D004524 ORTHO05D005477 8.4e-11 74.3 56 57.1
EL10As7g23744 Beta vulgaris HOM05D004524 ORTHO05D014474 3.2e-10 72.4 72 45.8
Nn7g37406 Nelumbo nucifera HOM05D002653 ORTHO05D002623 5.4e-10 71.6 287 22.3
Rhsim13G0127300 Rhododendron simsii HOM05D002653 ORTHO05D002623 5.4e-10 71.6 482 20.3
Glyma.02G061902 Glycine max HOM05D004524 ORTHO05D005477 2.1e-09 69.7 42 76.2
Potri.001G455600 Populus trichocarpa HOM05D002653 ORTHO05D002623 2.7e-09 69.3 367 22.3
Manes.09G076300 Manihot esculenta HOM05D002653 ORTHO05D002623 3.5e-09 68.9 388 21.9
Atru.chr8.1038_Atru.chr8.1039 Acer truncatum HOM05D002653 ORTHO05D002623 4.6e-09 68.6 382 20.9
Manes.11G165700 Manihot esculenta HOM05D002653 ORTHO05D002623 1.0e-08 67.4 245 26.1
Gohir.A05G394600 Gossypium hirsutum HOM05D002653 ORTHO05D002623 2.3e-08 66.2 373 21.2
CiPaw.06G000600 Carya illinoinensis HOM05D002653 ORTHO05D002623 3.9e-08 65.5 219 26.0
CANSAT01G2419 Cannabis sativa HOM05D002653 ORTHO05D002623 6.6e-08 64.7 309 22.0
DCAR_018920 Daucus carota HOM05D002653 ORTHO05D002623 8.7e-08 64.3 316 21.8
Gorai.012G024100 Gossypium raimondii HOM05D002653 ORTHO05D002623 1.1e-07 63.9 373 20.6
Gohir.D04G020351 Gossypium hirsutum HOM05D002653 ORTHO05D002623 1.9e-07 63.2 373 20.6
QL04p064964 Quercus lobata HOM05D002653 ORTHO05D002623 3.3e-07 62.4 219 25.1
ECA233G1976 Erigeron canadensis HOM05D002653 ORTHO05D002623 4.3e-07 62.0 219 26.0
vmacro03486 Vaccinium macrocarpon HOM05D002653 ORTHO05D002623 7.3e-07 61.2 234 22.6
Lsat_1_v5_gn_8_5081 Lactuca sativa HOM05D002653 ORTHO05D002623 9.6e-07 60.8 573 20.2
Thecc.01G150000 Theobroma cacao HOM05D002653 ORTHO05D002623 9.6e-07 60.8 300 22.7
Haze_24505 Corylus avellana HOM05D002653 ORTHO05D002623 1.6e-06 60.1 313 23.3
Cfa016258 Carpinus fangiana HOM05D002653 ORTHO05D002623 2.1e-06 59.7 313 23.3
TAR624G1146 Trochodendron aralioides HOM05D002653 ORTHO05D002623 2.1e-06 59.7 237 24.9
Duzib114G0204 Durio zibethinus HOM05D002653 ORTHO05D002623 2.8e-06 59.3 167 25.1
Eucgr.K01355 Eucalyptus grandis HOM05D002653 ORTHO05D002623 4.7e-06 58.5 141 27.7
Phvul.002G328600 Phaseolus vulgaris HOM05D002653 ORTHO05D002623 4.7e-06 58.5 281 22.4
ClCG03G010410 Citrullus lanatus HOM05D002653 ORTHO05D002623 6.2e-06 58.2 220 21.4
MBI12_g09298_MAGBIO Magnolia biondii HOM05D002653 ORTHO05D002623 8.1e-06 57.8 204 26.0


User provided reference genes

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