Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H01852 Eucalyptus grandis HOM05D004871 ORTHO05D005755 1.2e-278 962.6 532 100.0
Eucgr.J02242 Eucalyptus grandis HOM05D004871 ORTHO05D005755 1.6e-217 759.6 483 89.0
Eucgr.L00043 Eucalyptus grandis HOM05D004871 ORTHO05D005755 1.6e-188 663.3 483 79.9
QL02p074723 Quercus lobata HOM05D004871 ORTHO05D005755 1.2e-143 514.2 487 63.0
Prupe.3G291600 Prunus persica HOM05D004871 ORTHO05D005755 2.9e-142 509.6 486 59.9
CiPaw.03G043700 Carya illinoinensis HOM05D004871 ORTHO05D005755 4.9e-142 508.8 486 58.0
Haze_14739 Corylus avellana HOM05D004871 ORTHO05D005755 8.4e-142 508.1 484 62.2
Cfa007369 Carpinus fangiana HOM05D004871 ORTHO05D005755 3.5e-140 502.7 486 62.1
PGR083G0754 Punica granatum HOM05D004871 ORTHO05D005755 3.5e-140 502.7 489 59.1
RcHm_v2.0_Chr2g0172801 Rosa chinensis HOM05D004871 ORTHO05D005755 1.1e-138 497.7 483 55.9
Potri.017G069800 Populus trichocarpa HOM05D004871 ORTHO05D005755 9.0e-136 488.0 494 57.1
Ciclev10015079m.g Citrus clementina HOM05D004871 ORTHO05D005755 1.0e-134 484.6 492 55.3
MD17G1027100 Malus domestica HOM05D004871 ORTHO05D005755 1.3e-134 484.2 489 55.0
CiPaw.04G028400 Carya illinoinensis HOM05D004871 ORTHO05D005755 3.0e-131 473.0 485 58.4
MD09G1027100 Malus domestica HOM05D004871 ORTHO05D005755 2.1e-129 466.8 489 57.7
TWI12G0316 Tripterygium wilfordii HOM05D004871 ORTHO05D005755 2.1e-129 466.8 486 56.2
FAN14G1702 Fragaria x ananassa HOM05D004871 ORTHO05D005755 2.8e-129 466.5 483 57.6
FvH4_6g51200 Fragaria vesca HOM05D004871 ORTHO05D005755 8.2e-129 464.9 483 57.8
FAN02G2556 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.4e-128 464.2 483 57.8
Sabra17G0062100 Salix brachista HOM05D004871 ORTHO05D005755 2.4e-128 463.4 497 58.4
Cpa.g.sc130.82 Carica papaya HOM05D004871 ORTHO05D005755 5.3e-128 462.2 489 55.6
Duzib147G1217 Durio zibethinus HOM05D004871 ORTHO05D005755 5.3e-128 462.2 492 54.1
Gohir.A05G355800 Gossypium hirsutum HOM05D004871 ORTHO05D005755 9.0e-128 461.5 491 53.2
Gorai.012G064200 Gossypium raimondii HOM05D004871 ORTHO05D005755 1.3e-126 457.6 491 52.1
Atru.chr6.2393 Acer truncatum HOM05D004871 ORTHO05D005755 2.9e-126 456.4 489 54.0
Thecc.04G017200 Theobroma cacao HOM05D004871 ORTHO05D005755 8.4e-126 454.9 473 56.0
Gohir.D04G057500 Gossypium hirsutum HOM05D004871 ORTHO05D005755 1.4e-125 454.1 491 51.7
Manes.15G150700 Manihot esculenta HOM05D004871 ORTHO05D005755 3.2e-125 453.0 493 53.8
Lj1g0007322 Lotus japonicus HOM05D004871 ORTHO05D005755 9.3e-125 451.4 490 56.7
COL.COLO4_29115 Corchorus olitorius HOM05D004871 ORTHO05D005755 4.6e-124 449.1 484 53.1
CANSAT64G1143 Cannabis sativa HOM05D004871 ORTHO05D005755 2.3e-123 446.8 491 52.7
Gohir.D07G229900 Gossypium hirsutum HOM05D004871 ORTHO05D005755 3.7e-121 439.5 489 50.5
Hma1.2p1_2120F.1_g314420 Hydrangea macrophylla HOM05D004871 ORTHO05D005755 3.7e-121 439.5 487 51.7
Gorai.001G265000 Gossypium raimondii HOM05D004871 ORTHO05D005755 4.1e-120 436.0 486 50.8
Nn3g16731 Nelumbo nucifera HOM05D004871 ORTHO05D005755 2.3e-115 420.2 503 49.5
Nn3g16736 Nelumbo nucifera HOM05D004871 ORTHO05D005755 2.3e-115 420.2 503 49.5
ClCG10G013890 Citrullus lanatus HOM05D004871 ORTHO05D005755 8.8e-115 418.3 486 50.0
Sc16g0004350 Simmondsia chinensis HOM05D004871 ORTHO05D005755 3.4e-111 406.4 484 53.9
Sopen02g031150 Solanum pennellii HOM05D004871 ORTHO05D005755 7.7e-111 405.2 484 50.6
Ca_23007_v3 Cicer arietinum L. HOM05D004871 ORTHO05D005755 3.8e-110 402.9 489 52.8
Peaxi162Scf00129g00168 Petunia axillaris HOM05D004871 ORTHO05D005755 3.8e-110 402.9 483 49.3
PGSC0003DMG400012633 Solanum tuberosum HOM05D004871 ORTHO05D005755 3.8e-110 402.9 482 50.2
Cc07_g01680 Coffea canephora HOM05D004871 ORTHO05D005755 2.5e-109 400.2 483 50.7
THA.LOC104825322 Tarenaya hassleriana HOM05D004871 ORTHO05D005755 4.2e-109 399.4 491 51.5
DCAR_021722 Daucus carota HOM05D004871 ORTHO05D005755 9.4e-109 398.3 481 49.3
CAN.G473.11 Capsicum annuum HOM05D004871 ORTHO05D005755 4.7e-108 396.0 485 50.1
CSS0032397 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 1.0e-107 394.8 470 53.8
Medtr7g033720 Medicago truncatula HOM05D004871 ORTHO05D005755 5.1e-107 392.5 487 51.5
Oeu054623.1 Olea europaea HOM05D004871 ORTHO05D005755 1.1e-106 391.3 488 49.6
CsaV3_3G042800 Cucumis sativus L. HOM05D004871 ORTHO05D005755 2.2e-105 387.1 486 47.3
Glyma.19G068600 Glycine max HOM05D004871 ORTHO05D005755 2.4e-104 383.6 486 53.5
Sed0007166 Sechium edule HOM05D004871 ORTHO05D005755 3.1e-104 383.3 491 46.2
PSO832G2649 Papaver somniferum HOM05D004871 ORTHO05D005755 4.5e-103 379.4 491 48.7
MELO3C026581.2 Cucumis melo HOM05D004871 ORTHO05D005755 1.0e-102 378.3 487 46.2
Lalb_Chr24g0402861 Lupinus albus HOM05D004871 ORTHO05D005755 1.7e-102 377.5 500 49.8
FAN05G1656 Fragaria x ananassa HOM05D004871 ORTHO05D005755 2.2e-102 377.1 375 56.3
Rhsim08G0050600 Rhododendron simsii HOM05D004871 ORTHO05D005755 5.0e-102 375.9 497 50.5
TAR622G0125 Trochodendron aralioides HOM05D004871 ORTHO05D005755 5.5e-101 372.5 427 51.8
Lju41C42T3 Lonicera japonica HOM05D004871 ORTHO05D005755 1.6e-100 370.9 424 50.7
Dinv35106 Davidia involucrata HOM05D004871 ORTHO05D005755 2.1e-100 370.5 489 51.1
Phvul.008G154600 Phaseolus vulgaris HOM05D004871 ORTHO05D005755 2.7e-100 370.2 484 51.9
Oeu018139.1 Olea europaea HOM05D004871 ORTHO05D005755 3.0e-99 366.7 487 47.4
BraA04t17009Z Brassica rapa HOM05D004871 ORTHO05D005755 4.0e-99 366.3 492 45.7
vmacro23391 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 4.0e-99 366.3 482 50.0
PSO063G1038 Papaver somniferum HOM05D004871 ORTHO05D005755 2.6e-98 363.6 490 48.0
C04p47280 Brassica napus HOM05D004871 ORTHO05D005755 9.7e-98 361.7 491 49.1
BolC4t26328H Brassica oleracea HOM05D004871 ORTHO05D005755 9.7e-98 361.7 491 49.1
Rhsim08G0050100 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.2e-95 354.8 485 49.1
A04p13500 Brassica napus HOM05D004871 ORTHO05D005755 1.6e-95 354.4 484 47.3
Thhalv10028043m.g Eutrema salsugineum HOM05D004871 ORTHO05D005755 5.9e-95 352.4 498 45.0
Lalb_Chr14g0362771 Lupinus albus HOM05D004871 ORTHO05D005755 1.1e-93 348.2 492 47.6
Sp7g01440 Schrenkiella parvula HOM05D004871 ORTHO05D005755 4.2e-93 346.3 497 45.5
vmacro18283 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 7.2e-93 345.5 487 44.1
vmacro23390 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 2.1e-92 344.0 487 43.9
SGA_v2.0_scaffold18G08277 Striga asiatica HOM05D004871 ORTHO05D005755 2.0e-90 337.4 488 45.1
CARHR261520 Cardamine hirsuta HOM05D004871 ORTHO05D005755 2.6e-90 337.0 496 44.6
Peaxi162Scf00129g01652 Petunia axillaris HOM05D004871 ORTHO05D005755 2.6e-90 337.0 407 49.4
Migut.H00077 Erythranthe guttata HOM05D004871 ORTHO05D005755 1.3e-89 334.7 488 44.9
Aqoxy5G03783 Aquilegia oxysepala HOM05D004871 ORTHO05D005755 3.7e-89 333.2 478 45.6
Rhsim08G0049600 Rhododendron simsii HOM05D004871 ORTHO05D005755 4.8e-89 332.8 488 46.1
Aa31LG9G1150 Aethionema arabicum HOM05D004871 ORTHO05D005755 3.1e-88 330.1 499 41.7
SalBow2G2412 Salvia bowleyana HOM05D004871 ORTHO05D005755 3.1e-88 330.1 487 46.8
MSTRG.24039 Avicennia marina HOM05D004871 ORTHO05D005755 4.1e-88 329.7 476 43.7
Lj7C599T13 Lonicera japonica HOM05D004871 ORTHO05D005755 9.1e-88 328.6 504 41.9
Lsat_1_v5_gn_0_47681 Lactuca sativa HOM05D004871 ORTHO05D005755 1.2e-87 328.2 487 41.9
Rhsim08G0048900 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.7e-87 327.0 482 47.9
TAR371G0422 Trochodendron aralioides HOM05D004871 ORTHO05D005755 7.7e-87 325.5 488 48.4
Atru.chr6.2392 Acer truncatum HOM05D004871 ORTHO05D005755 3.8e-86 323.2 295 57.6
Gohir.A07G223200 Gossypium hirsutum HOM05D004871 ORTHO05D005755 1.2e-84 318.2 489 41.1
SalBow1G4779 Salvia bowleyana HOM05D004871 ORTHO05D005755 1.2e-84 318.2 487 41.7
Glyma.16G071200 Glycine max HOM05D004871 ORTHO05D005755 4.7e-84 316.2 484 45.5
AT5G40470 Arabidopsis thaliana HOM05D004871 ORTHO05D005755 2.3e-83 313.9 500 41.6
Dinv33442 Davidia involucrata HOM05D005666 ORTHO05D007183 5.2e-83 312.8 406 47.0
TAR371G0152 Trochodendron aralioides HOM05D004871 ORTHO05D005755 5.2e-83 312.8 484 47.3
Nitab4.5_0002468g0010 Nicotiana tabacum HOM05D004871 ORTHO05D005755 9.8e-82 308.5 329 53.8
Rhsim08G0050200 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.8e-81 307.0 487 45.0
TAR371G1027 Trochodendron aralioides HOM05D004871 ORTHO05D005755 3.1e-80 303.5 491 44.6
Nitab4.5_0003318g0120 Nicotiana tabacum HOM05D004871 ORTHO05D005755 4.1e-80 303.1 329 52.9
HanXRQChr17g0548491 Helianthus annuus HOM05D004871 ORTHO05D005755 2.0e-79 300.8 478 41.0
Carub.0007s3511 Capsella rubella HOM05D004871 ORTHO05D005755 2.3e-78 297.4 503 40.8
ATR0686G244 Amborella trichopoda HOM05D004871 ORTHO05D005755 2.9e-78 297.0 477 44.0
AL7G49360 Arabidopsis lyrata HOM05D004871 ORTHO05D005755 1.9e-77 294.3 500 39.6
GSVIVG01032408001 Vitis vinifera HOM05D004871 ORTHO05D005755 2.5e-77 293.9 287 62.7
Rhsim08G0049300 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.3e-77 293.5 497 39.6
HPP92_009906 Vanilla planifolia HOM05D004871 ORTHO05D005755 1.2e-76 291.6 510 42.0
Rhsim08G0049200 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.8e-76 290.4 261 65.9
Psat3g166880 Pisum sativum HOM05D004871 ORTHO05D005755 3.6e-76 290.0 309 56.3
Rhsim08G0049400 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.6e-76 290.0 432 44.7
CDE08G0710 Ceratophyllum demersum HOM05D004871 ORTHO05D005755 1.4e-75 288.1 425 44.0
vmacro18285 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 2.2e-73 280.8 484 44.6
vmacro23392 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 2.2e-73 280.8 484 44.6
VMungo1383G0924 Vigna mungo HOM05D004871 ORTHO05D005755 1.4e-72 278.1 258 64.0
FAN09G0732 Fragaria x ananassa HOM05D000795 ORTHO05D005755 1.8e-72 277.7 248 64.1
vmacro18284 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 2.4e-72 277.3 359 50.7
Zm00001eb246170 Zea mays HOM05D004871 ORTHO05D005755 3.2e-72 276.9 489 39.9
unitig_899.g14805 Utricularia gibba HOM05D004871 ORTHO05D005755 1.2e-71 275.0 419 43.7
HanXRQChr15g0475301 Helianthus annuus HOM05D004871 ORTHO05D005755 1.3e-70 271.6 462 39.4
Rhsim08G0050000 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.8e-68 263.8 482 42.9
Rhsim08G0050400 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.6e-68 263.5 481 44.3
Rhsim08G0050500 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.4e-67 261.5 488 43.6
Rhsim08G0049900 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.0e-66 257.7 484 41.9
BcaB06g27513 Brassica carinata HOM05D004871 ORTHO05D005755 2.6e-66 257.3 489 40.5
TAR633G0371 Trochodendron aralioides HOM05D004871 ORTHO05D005755 4.4e-66 256.5 344 46.2
Nn1g05920 Nelumbo nucifera HOM05D004871 ORTHO05D005755 6.6e-54 216.1 270 48.5
Rhsim08G0049500 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.6e-50 204.1 304 40.5
Rhsim08G0050300 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.9e-49 200.7 241 47.7
Peaxi162Scf00129g01633 Petunia axillaris HOM05D004871 ORTHO05D005755 4.9e-49 199.9 209 52.6
SMO298G0062 Selaginella moellendorffii HOM05D004871 ORTHO05D005755 2.4e-48 197.6 485 33.8
Actinidia35771 Actinidia chinensis HOM05D004871 ORTHO05D005755 3.2e-48 197.2 339 43.4
TPR.G1076 Trifolium pratense HOM05D004871 ORTHO05D005755 4.1e-48 196.8 448 37.1
Cc00_g26710 Coffea canephora HOM05D004871 ORTHO05D005755 3.9e-46 190.3 300 44.3
TAR371G0343 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.1e-43 182.2 176 54.5
CSS0034270 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 4.4e-42 176.8 164 70.1
TAR374G1232 Trochodendron aralioides HOM05D004871 ORTHO05D005755 4.9e-41 173.3 151 61.6
FAN05G3698 Fragaria x ananassa HOM05D004871 ORTHO05D005755 2.1e-39 167.9 164 65.2
TAR629G3424 Trochodendron aralioides HOM05D004871 ORTHO05D005755 2.3e-38 164.5 235 41.3
FAN27G1866 Fragaria x ananassa HOM05D004871 ORTHO05D005755 2.4e-35 154.5 174 49.4
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 9.3e-32 142.5 150 50.7
FAN09G0037 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.2e-31 142.1 153 51.6
BcaB07g32983 Brassica carinata HOM05D004871 ORTHO05D005755 3.0e-30 137.5 126 52.4
Solyc02g086440.4 Solanum lycopersicum HOM05D004871 ORTHO05D005755 1.8e-27 128.3 216 44.4
CSS0039002 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 1.2e-26 125.6 82 75.6
ATR0589G064 Amborella trichopoda HOM05D004871 ORTHO05D005755 1.3e-25 122.1 326 35.9
HanXRQChr07g0188231 Helianthus annuus HOM05D004871 ORTHO05D005755 1.6e-23 115.2 149 40.3
CSS0033026 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 1.6e-20 105.1 67 76.1
Nitab4.5_0007441g0020 Nicotiana tabacum HOM05D004871 ORTHO05D005755 2.1e-20 104.8 80 62.5
ATR0762G040 Amborella trichopoda HOM05D004871 ORTHO05D005755 7.6e-18 96.3 290 34.5
FAN14G0631 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.9e-16 91.7 74 60.8
Rhsim08G0180400 Rhododendron simsii HOM05D001576 ORTHO05D000401 1.9e-16 91.7 81 59.3
TAR314G0001 Trochodendron aralioides HOM05D004871 ORTHO05D005755 8.5e-09 66.2 133 35.3
QL12p041348 Quercus lobata HOM05D002813 ORTHO05D003203 3.6e-07 60.8 404 26.2
Psat3g012240 Pisum sativum HOM05D001219 ORTHO05D001017 1.3e-06 58.9 225 29.3
BcaB01g02206 Brassica carinata HOM05D002503 ORTHO05D002810 3.9e-06 57.4 408 23.5
Cpa.g.sc21.154 Carica papaya HOM05D001905 ORTHO05D001820 8.7e-06 56.2 359 24.8


User provided reference genes

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