Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H01388 Eucalyptus grandis HOM05D004859 ORTHO05D005807 1.2e-55 219.5 108 100.0
Gohir.A05G391600 Gossypium hirsutum HOM05D004859 ORTHO05D005807 3.1e-43 178.3 110 80.9
COL.COLO4_19821 Corchorus olitorius HOM05D004859 ORTHO05D005807 6.9e-43 177.2 108 81.5
Phvul.008G054200 Phaseolus vulgaris HOM05D004859 ORTHO05D005807 6.9e-43 177.2 109 78.9
CANSAT54G1839 Cannabis sativa HOM05D004859 ORTHO05D005807 9.0e-43 176.8 108 83.3
QL01p048380 Quercus lobata HOM05D004859 ORTHO05D005807 1.5e-42 176.0 109 80.7
VMungo1383G1359 Vigna mungo HOM05D004859 ORTHO05D005807 1.5e-42 176.0 108 81.5
Gorai.004G261900 Gossypium raimondii HOM05D004859 ORTHO05D005807 2.0e-42 175.6 108 83.3
Gohir.D04G025700 Gossypium hirsutum HOM05D004859 ORTHO05D005807 3.4e-42 174.9 110 80.0
Gorai.012G028300 Gossypium raimondii HOM05D004859 ORTHO05D005807 3.4e-42 174.9 110 80.0
PGR031G2676 Punica granatum HOM05D004859 ORTHO05D005807 3.4e-42 174.9 108 85.2
Duzib128G0817 Durio zibethinus HOM05D004859 ORTHO05D005807 4.5e-42 174.5 108 81.5
Gohir.D08G245400 Gossypium hirsutum HOM05D004859 ORTHO05D005807 4.5e-42 174.5 108 83.3
Cc09_g03620 Coffea canephora HOM05D004859 ORTHO05D005807 5.8e-42 174.1 113 79.6
Duzib177G0866 Durio zibethinus HOM05D004859 ORTHO05D005807 5.8e-42 174.1 110 79.1
Lalb_Chr03g0038491 Lupinus albus HOM05D004859 ORTHO05D005807 5.8e-42 174.1 108 77.8
CSS0011817 Camellia sinensis var. sinensis HOM05D004859 ORTHO05D005807 1.7e-41 172.6 107 83.2
ATR0568G125 Amborella trichopoda HOM05D004859 ORTHO05D005807 2.2e-41 172.2 108 80.6
CSS0045397 Camellia sinensis var. sinensis HOM05D004859 ORTHO05D005807 2.2e-41 172.2 108 80.6
Gohir.A08G225000 Gossypium hirsutum HOM05D004859 ORTHO05D005807 2.9e-41 171.8 103 83.5
Nn7g37400 Nelumbo nucifera HOM05D004859 ORTHO05D005807 2.9e-41 171.8 108 83.3
Actinidia38902 Actinidia chinensis HOM05D004859 ORTHO05D005807 3.8e-41 171.4 100 86.0
Glyma.09G250600 Glycine max HOM05D004859 ORTHO05D005807 3.8e-41 171.4 108 78.7
Lsat_1_v5_gn_2_18260 Lactuca sativa HOM05D004859 ORTHO05D005807 3.8e-41 171.4 108 78.7
Glyma.18G241900 Glycine max HOM05D004859 ORTHO05D005807 4.9e-41 171.0 108 79.6
TAR629G2726 Trochodendron aralioides HOM05D004859 ORTHO05D005807 4.9e-41 171.0 110 77.3
Haze_04552 Corylus avellana HOM05D004859 ORTHO05D005807 6.5e-41 170.6 108 80.6
Gohir.A13G154200 Gossypium hirsutum HOM05D004859 ORTHO05D005807 8.4e-41 170.2 108 79.6
Gohir.D13G158900 Gossypium hirsutum HOM05D004859 ORTHO05D005807 8.4e-41 170.2 108 79.6
Gorai.013G179600 Gossypium raimondii HOM05D004859 ORTHO05D005807 8.4e-41 170.2 108 79.6
Sc16g0010390 Simmondsia chinensis HOM05D004859 ORTHO05D005807 8.4e-41 170.2 108 79.6
ClCG03G010710 Citrullus lanatus HOM05D004859 ORTHO05D005807 1.1e-40 169.9 108 76.9
MBI18_g38869_MAGBIO Magnolia biondii HOM05D004859 ORTHO05D005807 1.1e-40 169.9 110 78.2
Thecc.05G199300 Theobroma cacao HOM05D004859 ORTHO05D005807 1.1e-40 169.9 108 81.5
Aa31LG5G13260 Aethionema arabicum HOM05D004859 ORTHO05D005807 1.4e-40 169.5 108 77.8
Potri.013G086400 Populus trichocarpa HOM05D004859 ORTHO05D005807 1.4e-40 169.5 108 81.5
CANSAT35G0417 Cannabis sativa HOM05D004859 ORTHO05D005807 1.9e-40 169.1 108 79.6
Manes.13G005600 Manihot esculenta HOM05D004859 ORTHO05D005807 1.9e-40 169.1 108 80.6
Nitab4.5_0000083g0160 Nicotiana tabacum HOM05D004859 ORTHO05D005807 1.9e-40 169.1 108 78.7
Potri.019G053500 Populus trichocarpa HOM05D004859 ORTHO05D005807 1.9e-40 169.1 106 81.1
TWI18G1000 Tripterygium wilfordii HOM05D004859 ORTHO05D005807 1.9e-40 169.1 108 78.7
GSVIVG01019111001 Vitis vinifera HOM05D004859 ORTHO05D005807 1.9e-40 169.1 107 79.4
Ca_07986_v3 Cicer arietinum L. HOM05D004859 ORTHO05D005807 2.5e-40 168.7 108 78.7
Manes.12G005900 Manihot esculenta HOM05D004859 ORTHO05D005807 2.5e-40 168.7 110 78.2
Peaxi162Scf00344g00092 Petunia axillaris HOM05D004859 ORTHO05D005807 2.5e-40 168.7 108 77.8
ECA233G5366 Erigeron canadensis HOM05D004859 ORTHO05D005807 3.2e-40 168.3 108 78.7
ECA238G2179 Erigeron canadensis HOM05D004859 ORTHO05D005807 3.2e-40 168.3 108 77.8
Hma1.2p1_0171F.1_g075510 Hydrangea macrophylla HOM05D004859 ORTHO05D005807 3.2e-40 168.3 108 79.6
Sc06g0005050 Simmondsia chinensis HOM05D004859 ORTHO05D005807 3.2e-40 168.3 108 76.9
Ciclev10013411m.g Citrus clementina HOM05D004859 ORTHO05D005807 4.2e-40 167.9 108 77.8
CsaV3_1G044540 Cucumis sativus L. HOM05D004859 ORTHO05D005807 4.2e-40 167.9 108 76.9
Nitab4.5_0001435g0020 Nicotiana tabacum HOM05D004859 ORTHO05D005807 4.2e-40 167.9 108 77.8
MELO3C010059.2 Cucumis melo HOM05D004859 ORTHO05D005807 5.5e-40 167.5 108 76.9
SalBow6G1022 Salvia bowleyana HOM05D004859 ORTHO05D005807 7.1e-40 167.2 108 81.5
TWI36G0708 Tripterygium wilfordii HOM05D004859 ORTHO05D005807 7.1e-40 167.2 108 79.6
CiPaw.07G080000 Carya illinoinensis HOM05D004859 ORTHO05D005807 9.3e-40 166.8 108 75.0
BcaC05g30510 Brassica carinata HOM05D004859 ORTHO05D005807 1.2e-39 166.4 108 75.9
C09p75910 Brassica napus HOM05D004859 ORTHO05D005807 1.2e-39 166.4 108 75.9
Carub.0003s0189 Capsella rubella HOM05D004859 ORTHO05D005807 1.2e-39 166.4 108 75.9
Cpa.g.sc39.7 Carica papaya HOM05D004859 ORTHO05D005807 1.2e-39 166.4 108 78.7
Lalb_Chr01g0020391 Lupinus albus HOM05D004859 ORTHO05D005807 1.2e-39 166.4 108 75.9
HanXRQChr11g0333601 Helianthus annuus HOM05D004859 ORTHO05D005807 1.6e-39 166.0 108 76.9
Rhsim09G0129900 Rhododendron simsii HOM05D004859 ORTHO05D005807 1.6e-39 166.0 107 80.4
unitig_749.g13492 Utricularia gibba HOM05D004859 ORTHO05D005807 1.6e-39 166.0 108 78.7
Aqoxy7G00303 Aquilegia oxysepala HOM05D004859 ORTHO05D005807 2.1e-39 165.6 107 73.8
Cfa006265 Carpinus fangiana HOM05D004859 ORTHO05D005807 2.1e-39 165.6 108 80.6
Lj1g0018632 Lotus japonicus HOM05D004859 ORTHO05D005807 2.1e-39 165.6 107 76.6
Sp3g01820 Schrenkiella parvula HOM05D004859 ORTHO05D005807 2.1e-39 165.6 108 75.9
Lsat_1_v5_gn_8_2360 Lactuca sativa HOM05D004859 ORTHO05D005807 6.0e-39 164.1 102 77.5
Oeu062049.1 Olea europaea HOM05D004859 ORTHO05D005807 6.0e-39 164.1 108 80.6
Psat3g138280 Pisum sativum HOM05D004859 ORTHO05D005807 7.9e-39 163.7 108 76.9
CDE12G0839 Ceratophyllum demersum HOM05D004859 ORTHO05D005807 1.0e-38 163.3 108 75.9
HPP92_025926 Vanilla planifolia HOM05D004859 ORTHO05D005807 1.0e-38 163.3 108 78.7
SEGI_19955 Sequoiadendron giganteum HOM05D004859 ORTHO05D005807 1.3e-38 162.9 110 73.6
AL3G12200 Arabidopsis lyrata HOM05D004859 ORTHO05D005807 1.8e-38 162.5 108 75.0
BcaC05g30507 Brassica carinata HOM05D004859 ORTHO05D005807 1.8e-38 162.5 108 74.1
BolC5t35066H Brassica oleracea HOM05D004859 ORTHO05D005807 1.8e-38 162.5 108 75.0
Prupe.6G361200 Prunus persica HOM05D004859 ORTHO05D005807 1.8e-38 162.5 117 71.8
Solyc04g056350.1 Solanum lycopersicum HOM05D004859 ORTHO05D005807 1.8e-38 162.5 108 76.9
unitig_26.g9580 Utricularia gibba HOM05D000798 ORTHO05D000659 1.8e-38 162.5 108 77.8
Sopen04g025250 Solanum pennellii HOM05D004859 ORTHO05D005807 2.3e-38 162.2 108 76.9
THA.LOC104802953 Tarenaya hassleriana HOM05D004859 ORTHO05D005807 2.3e-38 162.2 110 73.6
Atru.chr12.1788 Acer truncatum HOM05D004859 ORTHO05D005807 3.0e-38 161.8 108 75.9
CARHR076800 Cardamine hirsuta HOM05D004859 ORTHO05D005807 3.0e-38 161.8 108 74.1
CAN.G217.12 Capsicum annuum HOM05D004859 ORTHO05D005807 3.9e-38 161.4 108 75.0
DCAR_024584 Daucus carota HOM05D004859 ORTHO05D005807 3.9e-38 161.4 108 74.1
DCAR_029983 Daucus carota HOM05D004859 ORTHO05D005807 3.9e-38 161.4 108 75.0
Medtr7g079990 Medicago truncatula HOM05D004859 ORTHO05D005807 3.9e-38 161.4 108 75.9
Oeu020252.1 Olea europaea HOM05D004859 ORTHO05D005807 3.9e-38 161.4 110 75.5
RcHm_v2.0_Chr3g0447891 Rosa chinensis HOM05D004859 ORTHO05D005807 3.9e-38 161.4 108 75.0
TPR.G30708 Trifolium pratense HOM05D004859 ORTHO05D005807 3.9e-38 161.4 108 75.9
Sabra13G0077700 Salix brachista HOM05D004859 ORTHO05D005807 6.7e-38 160.6 100 78.0
THA.LOC104827174 Tarenaya hassleriana HOM05D004859 ORTHO05D005807 6.7e-38 160.6 108 75.0
AT3G02790 Arabidopsis thaliana HOM05D004859 ORTHO05D005807 8.7e-38 160.2 108 74.1
Migut.F02136 Erythranthe guttata HOM05D004859 ORTHO05D005807 8.7e-38 160.2 108 75.9
PGSC0003DMG400007259 Solanum tuberosum HOM05D004859 ORTHO05D005807 1.1e-37 159.8 108 76.9
MD04G1244600 Malus domestica HOM05D004859 ORTHO05D005807 1.5e-37 159.5 113 71.7
FvH4_6g00510 Fragaria vesca HOM05D004859 ORTHO05D005807 1.9e-37 159.1 108 70.4
Sed0011478 Sechium edule HOM05D004859 ORTHO05D005807 1.9e-37 159.1 108 73.1
FAN09G3430 Fragaria x ananassa HOM05D004859 ORTHO05D005807 2.5e-37 158.7 107 70.1
FAN14G1059 Fragaria x ananassa HOM05D004859 ORTHO05D005807 2.5e-37 158.7 107 70.1
HanXRQChr09g0244001 Helianthus annuus HOM05D004859 ORTHO05D005807 2.5e-37 158.7 108 74.1
Ah.06g195490 Amaranthus hybridus HOM05D004859 ORTHO05D005807 3.3e-37 158.3 108 75.0
MD12G1260500 Malus domestica HOM05D004859 ORTHO05D005807 3.3e-37 158.3 112 72.3
AUR62000312 Chenopodium quinoa HOM05D004859 ORTHO05D005807 4.3e-37 157.9 108 74.1
PSO675G0300 Papaver somniferum HOM05D004859 ORTHO05D005807 4.3e-37 157.9 108 72.2
PSO675G8596 Papaver somniferum HOM05D004859 ORTHO05D005807 4.3e-37 157.9 108 72.2
AUR62006657 Chenopodium quinoa HOM05D004859 ORTHO05D005807 5.7e-37 157.5 108 74.1
Mapoly0153s0037 Marchantia polymorpha HOM05D004859 ORTHO05D005807 5.7e-37 157.5 108 74.1
BcaB01g04980 Brassica carinata HOM05D004859 ORTHO05D005807 1.3e-36 156.4 108 72.2
BolC3t13398H Brassica oleracea HOM05D004859 ORTHO05D005807 1.3e-36 156.4 108 72.2
FAN05G4796 Fragaria x ananassa HOM05D004859 ORTHO05D005807 1.3e-36 156.4 108 73.1
Pp3c26_1250 Physcomitrium patens HOM05D004859 ORTHO05D005807 1.3e-36 156.4 108 72.2
Pp3c9_1130 Physcomitrium patens HOM05D004859 ORTHO05D005807 1.6e-36 156.0 108 72.2
A10p22730 Brassica napus HOM05D004859 ORTHO05D005807 2.2e-36 155.6 108 73.1
BraA10t44336Z Brassica rapa HOM05D004859 ORTHO05D005807 2.2e-36 155.6 108 73.1
SMO361G0285 Selaginella moellendorffii HOM05D004859 ORTHO05D005807 2.8e-36 155.2 108 71.3
A02p03550 Brassica napus HOM05D004859 ORTHO05D005807 3.7e-36 154.8 108 72.2
A03p07800 Brassica napus HOM05D004859 ORTHO05D005807 4.8e-36 154.5 109 72.5
BraA03t10107Z Brassica rapa HOM05D004859 ORTHO05D005807 4.8e-36 154.5 109 72.5
BraA02t05326Z Brassica rapa HOM05D004859 ORTHO05D005807 6.3e-36 154.1 108 72.2
Aa31LG11G13190 Aethionema arabicum HOM05D004859 ORTHO05D005807 8.2e-36 153.7 108 71.3
SHI13720 Sapria himalayana HOM05D004859 ORTHO05D005807 8.2e-36 153.7 107 72.0
BcaB08g36850 Brassica carinata HOM05D004859 ORTHO05D005807 1.4e-35 152.9 108 71.3
BcaC04g18876 Brassica carinata HOM05D004859 ORTHO05D005807 1.4e-35 152.9 108 71.3
C09p60710 Brassica napus HOM05D004859 ORTHO05D005807 1.4e-35 152.9 108 71.3
BolC9t58902H Brassica oleracea HOM05D004859 ORTHO05D005807 1.4e-35 152.9 108 71.3
Sp6g27710 Schrenkiella parvula HOM05D004859 ORTHO05D005807 1.4e-35 152.9 108 71.3
Zm00001eb272650 Zea mays HOM05D004859 ORTHO05D005807 1.4e-35 152.9 109 69.7
EL10Ac4g09966 Beta vulgaris HOM05D004859 ORTHO05D005807 1.8e-35 152.5 105 72.4
Thhalv10015095m.g Eutrema salsugineum HOM05D004859 ORTHO05D005807 1.8e-35 152.5 108 71.3
BcaC03g18492 Brassica carinata HOM05D004859 ORTHO05D005807 3.1e-35 151.8 108 71.3
Pp3c15_1090 Physcomitrium patens HOM05D004859 ORTHO05D005807 3.1e-35 151.8 108 70.4
CARHR196760 Cardamine hirsuta HOM05D004859 ORTHO05D005807 4.1e-35 151.4 108 71.3
BolC2t06754H Brassica oleracea HOM05D004859 ORTHO05D005807 1.2e-34 149.8 108 70.4
Os06g0708600 Oryza sativa ssp. japonica HOM05D004859 ORTHO05D005807 5.9e-34 147.5 115 67.0
AL6G27410 Arabidopsis lyrata HOM05D004859 ORTHO05D005807 7.6e-34 147.1 108 69.4
AT5G16470 Arabidopsis thaliana HOM05D004859 ORTHO05D005807 7.6e-34 147.1 108 69.4
Carub.0006s1467 Capsella rubella HOM05D004859 ORTHO05D005807 7.6e-34 147.1 108 69.4
Zm00001eb227470 Zea mays HOM05D004859 ORTHO05D005807 2.2e-33 145.6 119 63.0
VMungo0464G0653 Vigna mungo HOM05D004859 ORTHO05D005807 4.8e-28 127.9 81 74.1
A05p44330 Brassica napus HOM05D004859 ORTHO05D005807 2.5e-24 115.5 69 79.7
BraA06t23289Z Brassica rapa HOM05D004859 ORTHO05D005807 2.5e-24 115.5 69 79.7
Cre09.g416500 Chlamydomonas reinhardtii HOM05D004859 ORTHO05D005807 2.0e-21 105.9 106 59.4
RcHm_v2.0_Chr1g0316641 Rosa chinensis HOM05D004859 ORTHO05D005807 3.7e-20 101.7 72 66.7
Nn1g09361 Nelumbo nucifera HOM05D004859 ORTHO05D005807 4.1e-19 98.2 52 90.4
PRCOL_00002520 Prasinoderma coloniale HOM05D004859 ORTHO05D005807 1.3e-17 93.2 82 57.3
Nn1g01054 Nelumbo nucifera HOM05D004859 ORTHO05D005807 8.5e-17 90.5 56 76.8
AUR62006656 Chenopodium quinoa HOM05D004859 ORTHO05D005807 3.0e-14 82.0 84 51.2
BcaB08g36851 Brassica carinata HOM05D004859 ORTHO05D005807 1.3e-12 76.6 108 47.2
SHI22764 Sapria himalayana HOM05D004859 ORTHO05D005807 7.7e-10 67.4 72 50.0
SHI07073 Sapria himalayana HOM05D004859 ORTHO05D005807 2.3e-06 55.8 77 45.5
Dinv29105 Davidia involucrata HOM05D004859 ORTHO05D005807 3.0e-06 55.5 28 96.4


User provided reference genes

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