Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H01336 Eucalyptus grandis HOM05D000627 ORTHO05D000365 0.0e+00 1086.2 560 100.0
QL03p011172 Quercus lobata HOM05D000627 ORTHO05D000365 4.9e-76 289.7 741 33.6
Haze_15014 Corylus avellana HOM05D000627 ORTHO05D000365 9.3e-75 285.4 735 32.1
CiPaw.01G001200 Carya illinoinensis HOM05D000627 ORTHO05D000365 1.9e-72 277.7 731 31.9
Dinv24521 Davidia involucrata HOM05D000627 ORTHO05D000365 4.5e-69 266.5 712 32.2
Ciclev10027890m.g Citrus clementina HOM05D000627 ORTHO05D000365 5.5e-67 259.6 726 32.1
Thecc.05G330400 Theobroma cacao HOM05D000627 ORTHO05D000365 3.3e-64 250.4 729 31.3
Manes.09G181800 Manihot esculenta HOM05D000627 ORTHO05D000365 6.9e-62 242.7 738 30.6
Prupe.6G303500 Prunus persica HOM05D000627 ORTHO05D000365 6.9e-62 242.7 736 30.6
Actinidia17735 Actinidia chinensis HOM05D000627 ORTHO05D000365 5.0e-60 236.5 715 30.3
Potri.005G001800 Populus trichocarpa HOM05D000627 ORTHO05D000365 1.2e-58 231.9 735 30.3
RcHm_v2.0_Chr3g0458701 Rosa chinensis HOM05D000627 ORTHO05D000365 4.7e-58 229.9 744 30.0
Duzib128G1257 Durio zibethinus HOM05D000627 ORTHO05D000365 7.9e-58 229.2 709 30.9
Atru.chr12.1522 Acer truncatum HOM05D000627 ORTHO05D000365 2.3e-57 227.6 755 29.9
Potri.013G001300 Populus trichocarpa HOM05D000627 ORTHO05D000365 3.3e-56 223.8 713 30.3
GSVIVG01031338001 Vitis vinifera HOM05D000627 ORTHO05D000365 9.7e-56 222.2 605 33.6
PGR031G0109 Punica granatum HOM05D000627 ORTHO05D000365 2.2e-55 221.1 676 32.4
Duzib177G0820 Durio zibethinus HOM05D000627 ORTHO05D000365 1.4e-54 218.4 720 29.3
Rhsim05G0124000 Rhododendron simsii HOM05D000627 ORTHO05D000365 1.0e-52 212.2 681 30.2
Nn4g25302 Nelumbo nucifera HOM05D000627 ORTHO05D000365 1.3e-52 211.8 738 29.5
Manes.08G107100 Manihot esculenta HOM05D000627 ORTHO05D000365 1.7e-52 211.5 735 29.5
Hma1.2p1_0759F.1_g213840 Hydrangea macrophylla HOM05D000627 ORTHO05D000365 2.9e-52 210.7 697 28.8
FvH4_6g08610 Fragaria vesca HOM05D000627 ORTHO05D000365 5.0e-52 209.9 712 29.6
FAN02G1668 Fragaria x ananassa HOM05D000627 ORTHO05D000365 1.1e-51 208.8 706 29.6
CSS0000158 Camellia sinensis var. sinensis HOM05D000627 ORTHO05D000365 3.2e-51 207.2 704 29.7
Rhsim11G0106200 Rhododendron simsii HOM05D000627 ORTHO05D000365 5.5e-51 206.5 696 30.3
Actinidia22852 Actinidia chinensis HOM05D000627 ORTHO05D000365 1.6e-50 204.9 717 29.3
FAN14G2970 Fragaria x ananassa HOM05D000627 ORTHO05D000365 2.1e-50 204.5 682 29.5
PGR083G1143 Punica granatum HOM05D000627 ORTHO05D000365 2.6e-48 197.6 759 29.1
Nn3g21980 Nelumbo nucifera HOM05D000627 ORTHO05D000365 1.7e-47 194.9 716 27.4
TAR633G0207 Trochodendron aralioides HOM05D000627 ORTHO05D000365 6.3e-47 193.0 754 28.1
CSS0047972 Camellia sinensis var. sinensis HOM05D000627 ORTHO05D000365 1.1e-46 192.2 648 29.0
COL.COLO4_05481 Corchorus olitorius HOM05D000627 ORTHO05D000365 1.1e-46 192.2 722 28.5
vmacro01664 Vaccinium macrocarpon HOM05D000627 ORTHO05D000365 3.1e-46 190.7 712 27.5
SalBow5G1080 Salvia bowleyana HOM05D000627 ORTHO05D000365 1.6e-45 188.3 674 29.2
FAN09G4740 Fragaria x ananassa HOM05D000627 ORTHO05D000365 1.0e-44 185.7 626 29.6
Solyc01g102300.3 Solanum lycopersicum HOM05D000627 ORTHO05D000365 1.0e-44 185.7 743 28.0
FAN05G0854 Fragaria x ananassa HOM05D000627 ORTHO05D000365 1.7e-44 184.9 708 27.1
Cc02_g35910 Coffea canephora HOM05D000627 ORTHO05D000365 2.9e-44 184.1 723 27.7
Sabra13G0001100 Salix brachista HOM05D000627 ORTHO05D000365 3.8e-44 183.7 717 28.3
Sopen01g044750 Solanum pennellii HOM05D000627 ORTHO05D000365 3.2e-43 180.6 733 28.1
MD04G1185100 Malus domestica HOM05D000627 ORTHO05D000365 5.5e-43 179.9 645 27.1
vmacro19795 Vaccinium macrocarpon HOM05D000627 ORTHO05D000365 9.4e-43 179.1 710 28.5
ClCG02G014630 Citrullus lanatus HOM05D000627 ORTHO05D000365 2.7e-42 177.6 723 27.4
Ca_10208_v3 Cicer arietinum L. HOM05D000627 ORTHO05D000365 4.7e-42 176.8 711 28.0
Nitab4.5_0006117g0010 Nicotiana tabacum HOM05D000627 ORTHO05D000365 6.1e-42 176.4 703 28.3
CsaV3_2G007370 Cucumis sativus L. HOM05D000627 ORTHO05D000365 2.3e-41 174.5 713 26.9
Nitab4.5_0012308g0010 Nicotiana tabacum HOM05D000627 ORTHO05D000365 2.3e-41 174.5 678 28.0
Actinidia11692 Actinidia chinensis HOM05D000627 ORTHO05D000365 4.0e-41 173.7 652 28.8
Sed0026237 Sechium edule HOM05D000627 ORTHO05D000365 3.3e-40 170.6 720 27.4
Sc16g0009430 Simmondsia chinensis HOM05D000627 ORTHO05D000365 3.3e-40 170.6 684 27.3
arahy.Tifrunner.gnm1.ann1.ILFA61 Arachis hypogaea HOM05D000627 ORTHO05D000365 5.7e-40 169.9 689 28.3
arahy.Tifrunner.gnm1.ann1.IC82WL Arachis hypogaea HOM05D000627 ORTHO05D000365 1.3e-39 168.7 744 28.0
MBI19_g04827_MAGBIO Magnolia biondii HOM05D000627 ORTHO05D000365 4.8e-39 166.8 733 27.7
Oeu062798.2 Olea europaea HOM05D000627 ORTHO05D000365 6.3e-39 166.4 733 26.9
CAN.G1248.10 Capsicum annuum HOM05D000627 ORTHO05D000365 8.3e-39 166.0 724 26.8
Medtr1g084980 Medicago truncatula HOM05D000627 ORTHO05D000365 1.8e-38 164.9 711 27.1
Dinv30953 Davidia involucrata HOM05D000627 ORTHO05D000365 3.1e-38 164.1 648 27.3
PGSC0003DMG400018280 Solanum tuberosum HOM05D000627 ORTHO05D000365 3.1e-38 164.1 721 27.2
Psat6g155920 Pisum sativum HOM05D000627 ORTHO05D000365 4.1e-38 163.7 707 28.1
AUR62000483 Chenopodium quinoa HOM05D000627 ORTHO05D000365 2.0e-37 161.4 675 27.7
Hund21826 Selenicereus undatus HOM05D000627 ORTHO05D000365 2.0e-37 161.4 635 28.7
Sed0011745 Sechium edule HOM05D000627 ORTHO05D000365 1.7e-36 158.3 675 27.1
Duzib106G0443 Durio zibethinus HOM05D000627 ORTHO05D000365 5.0e-36 156.8 659 27.0
VMungo0720G1779 Vigna mungo HOM05D000627 ORTHO05D000365 8.5e-36 156.0 728 27.6
Glyma.20G091200 Glycine max HOM05D000627 ORTHO05D000365 1.1e-35 155.6 728 26.4
Phvul.007G206000 Phaseolus vulgaris HOM05D000627 ORTHO05D000365 3.2e-35 154.1 733 27.7
Nitab4.5_0001975g0030 Nicotiana tabacum HOM05D000627 ORTHO05D000365 5.5e-35 153.3 665 26.8
Gorai.007G309400 Gossypium raimondii HOM05D000627 ORTHO05D000365 2.1e-34 151.4 724 26.4
Gohir.D11G286100 Gossypium hirsutum HOM05D000627 ORTHO05D000365 3.6e-34 150.6 728 26.0
MD12G1199000 Malus domestica HOM05D000627 ORTHO05D000365 3.6e-34 150.6 340 33.5
Lj5g0002964 Lotus japonicus HOM05D000627 ORTHO05D000365 4.7e-34 150.2 733 26.3
Lalb_Chr06g0167261 Lupinus albus HOM05D000627 ORTHO05D000365 4.7e-34 150.2 740 25.5
MELO3C031303.2 Cucumis melo HOM05D000627 ORTHO05D000365 3.0e-33 147.5 697 25.4
Eucgr.B01825 Eucalyptus grandis HOM05D000627 ORTHO05D000365 5.2e-33 146.7 704 26.1
Hund07268 Selenicereus undatus HOM05D000627 ORTHO05D000365 6.8e-33 146.4 692 26.2
TPR.G34901 Trifolium pratense HOM05D000627 ORTHO05D000365 8.8e-33 146.0 683 26.6
Peaxi162Scf00071g00210 Petunia axillaris HOM05D000627 ORTHO05D000365 1.5e-32 145.2 699 27.2
TAR365G1241 Trochodendron aralioides HOM05D000627 ORTHO05D000365 1.5e-32 145.2 340 35.3
Oeu061909.1 Olea europaea HOM05D000627 ORTHO05D000365 7.5e-32 142.9 732 24.9
Glyma.10G142600 Glycine max HOM05D000627 ORTHO05D000365 1.3e-31 142.1 673 26.3
Peaxi162Scf00194g00213 Petunia axillaris HOM05D000627 ORTHO05D000365 1.1e-30 139.0 672 25.9
Lj5A317T24 Lonicera japonica HOM05D000627 ORTHO05D000365 2.4e-30 137.9 333 33.9
Cfa011945 Carpinus fangiana HOM05D000627 ORTHO05D000365 4.1e-30 137.1 323 32.2
MBI18_g03843_MAGBIO Magnolia biondii HOM05D000627 ORTHO05D000365 5.4e-30 136.7 704 24.9
AUR62006825 Chenopodium quinoa HOM05D000627 ORTHO05D000365 7.7e-29 132.9 290 35.5
DCAR_029297 Daucus carota HOM05D000627 ORTHO05D000365 7.7e-29 132.9 723 25.9
Lalb_Chr02g0147481 Lupinus albus HOM05D000627 ORTHO05D000365 7.7e-29 132.9 736 23.9
EL10Ac4g09570 Beta vulgaris HOM05D000627 ORTHO05D000365 1.7e-28 131.7 697 26.0
MSTRG.16434 Avicennia marina HOM05D000627 ORTHO05D000365 8.6e-28 129.4 682 25.2
arahy.Tifrunner.gnm1.ann1.SDDU5A Arachis hypogaea HOM05D000627 ORTHO05D000365 8.0e-26 122.9 747 25.4
Aqoxy2G02438 Aquilegia oxysepala HOM05D000627 ORTHO05D000365 1.4e-25 122.1 710 25.5
VMungo1383G0894 Vigna mungo HOM05D000627 ORTHO05D000365 3.4e-24 117.5 628 25.0
Gohir.A11G275700 Gossypium hirsutum HOM05D000627 ORTHO05D000365 1.7e-23 115.2 204 38.2
Migut.B00888 Erythranthe guttata HOM05D000627 ORTHO05D000365 2.8e-23 114.4 649 25.6
Ah.06g190790 Amaranthus hybridus HOM05D000627 ORTHO05D000365 4.9e-23 113.6 673 24.5
Glyma.19G224700 Glycine max HOM05D000627 ORTHO05D000365 4.9e-23 113.6 628 25.0
Nitab4.5_0000081g0240 Nicotiana tabacum HOM05D000627 ORTHO05D000365 3.1e-22 110.9 137 44.5
Lsat_1_v5_gn_5_149161 Lactuca sativa HOM05D000627 ORTHO05D000365 1.2e-21 109.0 598 26.1
Lj5A302T14 Lonicera japonica HOM05D000627 ORTHO05D000365 1.6e-21 108.6 283 30.0
PSO357G0182 Papaver somniferum HOM05D000627 ORTHO05D000365 1.7e-20 105.1 710 25.4
arahy.Tifrunner.gnm1.ann1.03LME3 Arachis hypogaea HOM05D000627 ORTHO05D000365 2.3e-20 104.8 726 24.8
Nitab4.5_0000081g0230 Nicotiana tabacum HOM05D000627 ORTHO05D000365 2.9e-20 104.4 150 43.3
HanXRQChr16g0513391 Helianthus annuus HOM05D000627 ORTHO05D000365 1.9e-19 101.7 588 25.0
MD12G1198900 Malus domestica HOM05D000627 ORTHO05D000365 1.2e-18 99.0 146 42.5
ATR0796G291 Amborella trichopoda HOM05D000627 ORTHO05D000365 2.1e-18 98.2 664 23.5
PSO170G0649 Papaver somniferum HOM05D000627 ORTHO05D000365 1.8e-17 95.1 710 24.9
THA.LOC104823710 Tarenaya hassleriana HOM05D000627 ORTHO05D000365 8.9e-17 92.8 288 29.2
MSTRG.5169 Avicennia marina HOM05D000627 ORTHO05D000365 2.0e-16 91.7 339 30.4
ECA234G3746 Erigeron canadensis HOM05D000627 ORTHO05D000365 7.5e-16 89.7 578 24.9
HanXRQChr10g0294441 Helianthus annuus HOM05D000627 ORTHO05D000365 1.3e-15 89.0 578 25.6
THA.LOC104820437 Tarenaya hassleriana HOM05D000627 ORTHO05D000365 1.7e-15 88.6 670 24.3
Glyma.03G227800 Glycine max HOM05D000627 ORTHO05D000365 2.2e-15 88.2 321 28.3
Thhalv10007343m.g Eutrema salsugineum HOM05D000627 ORTHO05D000365 4.9e-15 87.0 493 27.0
Glyma.03G227750 Glycine max HOM05D000627 ORTHO05D000365 4.9e-15 87.0 220 35.5
Sc09g0002390 Simmondsia chinensis HOM05D000627 ORTHO05D000365 6.4e-15 86.7 564 24.6
Lalb_Chr18g0046241 Lupinus albus HOM05D000627 ORTHO05D000365 8.3e-15 86.3 606 22.9
TPR.G1653 Trifolium pratense HOM05D000627 ORTHO05D000365 1.9e-14 85.1 693 25.0
CDE01G0138 Ceratophyllum demersum HOM05D000627 ORTHO05D000365 3.2e-14 84.3 630 22.5
HPP92_012760 Vanilla planifolia HOM05D000627 ORTHO05D000365 2.0e-13 81.6 517 24.2
AL1G20050 Arabidopsis lyrata HOM05D000627 ORTHO05D000365 3.9e-12 77.4 290 27.2
AT1G09530 Arabidopsis thaliana HOM05D000627 ORTHO05D000365 3.9e-12 77.4 205 29.8
Carub.0001s0887 Capsella rubella HOM05D000627 ORTHO05D000365 3.9e-12 77.4 205 29.8
CDE09G1436 Ceratophyllum demersum HOM05D000627 ORTHO05D000365 3.9e-12 77.4 141 39.0
Medtr7g111320 Medicago truncatula HOM05D000627 ORTHO05D000365 1.1e-11 75.9 675 23.6
Actinidia01660 Actinidia chinensis HOM05D000627 ORTHO05D000365 1.5e-11 75.5 99 43.4
Sp1g08130 Schrenkiella parvula HOM05D000627 ORTHO05D000365 1.5e-11 75.5 289 28.0
CARHR009500 Cardamine hirsuta HOM05D000627 ORTHO05D000365 1.9e-11 75.1 455 24.8
Os01g0286100 Oryza sativa ssp. japonica HOM05D000627 ORTHO05D000365 3.3e-11 74.3 222 32.0
A06p06220 Brassica napus HOM05D000627 ORTHO05D000365 2.1e-10 71.6 475 26.1
BraA06t23833Z Brassica rapa HOM05D000627 ORTHO05D000365 2.8e-10 71.2 474 25.9
C05p07530 Brassica napus HOM05D000627 ORTHO05D000365 8.0e-10 69.7 468 25.4
BolC5t29507H Brassica oleracea HOM05D000627 ORTHO05D000365 8.0e-10 69.7 468 25.4
BraA09t41891Z Brassica rapa HOM05D000627 ORTHO05D000365 1.8e-09 68.6 477 26.0
MSTRG.5170 Avicennia marina HOM05D000627 ORTHO05D000365 3.1e-09 67.8 208 29.3
HPP92_002634 Vanilla planifolia HOM05D000627 ORTHO05D000365 3.1e-09 67.8 176 30.7
Aa31LG1G5530 Aethionema arabicum HOM05D000627 ORTHO05D000365 5.2e-09 67.0 511 22.9
C08p49430 Brassica napus HOM05D000627 ORTHO05D000365 4.4e-08 63.9 477 25.8
QL12p035072 Quercus lobata HOM05D000627 ORTHO05D000365 4.4e-08 63.9 177 31.6
BolC8t52480H Brassica oleracea HOM05D000627 ORTHO05D000365 7.5e-08 63.2 477 25.4
Zm00001eb129520 Zea mays HOM05D000627 ORTHO05D000365 2.2e-07 61.6 192 31.8
BcaC07g41876 Brassica carinata HOM05D000627 ORTHO05D000365 1.4e-06 58.9 476 24.4
unitig_27.g24927 Utricularia gibba HOM05D000627 ORTHO05D000365 2.4e-06 58.2 172 32.6
Haze_05157 Corylus avellana HOM05D000627 ORTHO05D000365 3.2e-06 57.8 525 23.2
unitig_578.g15947 Utricularia gibba HOM05D000627 ORTHO05D000365 3.2e-06 57.8 105 37.1
unitig_8.g4509 Utricularia gibba HOM05D000627 ORTHO05D000365 7.0e-06 56.6 151 28.5


User provided reference genes

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