Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H00960 Eucalyptus grandis HOM05D005168 ORTHO05D006358 5.5e-62 240.7 117 100.0
Eucgr.C01258 Eucalyptus grandis HOM05D005168 ORTHO05D006358 8.8e-60 233.4 117 96.6
PGR031G0142 Punica granatum HOM05D005168 ORTHO05D006358 3.6e-53 211.5 117 87.2
CANSAT11G0916 Cannabis sativa HOM05D005168 ORTHO05D006358 6.8e-36 154.1 117 59.8
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 1.2e-35 153.3 117 62.4
TWI56G1449 Tripterygium wilfordii HOM05D005168 ORTHO05D006358 2.0e-35 152.5 117 60.7
Eucgr.L01842 Eucalyptus grandis HOM05D005168 ORTHO05D006358 2.6e-35 152.1 74 98.6
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 2.8e-34 148.7 117 59.0
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 8.3e-34 147.1 117 57.3
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 8.3e-34 147.1 118 59.3
QL01p031168 Quercus lobata HOM05D005168 ORTHO05D006358 2.4e-33 145.6 116 56.0
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 5.4e-33 144.4 117 58.1
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 5.4e-33 144.4 117 56.4
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 1.2e-32 143.3 117 56.4
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 2.0e-32 142.5 117 56.4
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 2.0e-32 142.5 117 56.4
Prupe.6G147400 Prunus persica HOM05D005168 ORTHO05D006358 2.7e-32 142.1 118 59.3
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 3.5e-32 141.7 117 56.4
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 7.8e-32 140.6 114 58.8
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 1.0e-31 140.2 117 54.7
Thecc.08G047200 Theobroma cacao HOM05D005168 ORTHO05D006358 2.3e-31 139.0 120 57.5
Hma1.2p1_0733F.1_g210170 Hydrangea macrophylla HOM05D005168 ORTHO05D006358 2.9e-31 138.7 119 58.0
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 2.9e-31 138.7 114 57.0
Manes.14G063600 Manihot esculenta HOM05D005168 ORTHO05D006358 8.6e-31 137.1 118 53.4
THA.LOC104811420 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.1e-30 136.7 121 56.2
Atru.chr1.3654 Acer truncatum HOM05D005168 ORTHO05D006358 2.5e-30 135.6 113 57.5
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 3.3e-30 135.2 117 55.6
Potri.013G015000 Populus trichocarpa HOM05D005168 ORTHO05D006358 3.3e-30 135.2 118 53.4
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 3.3e-30 135.2 121 55.4
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 3.3e-30 135.2 121 55.4
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 5.6e-30 134.4 117 54.7
PSO541G4324 Papaver somniferum HOM05D005168 ORTHO05D006358 5.6e-30 134.4 124 53.2
PSO675G5410 Papaver somniferum HOM05D005168 ORTHO05D006358 5.6e-30 134.4 124 53.2
Aa31LG4G6030 Aethionema arabicum HOM05D005168 ORTHO05D006358 1.2e-29 133.3 121 55.4
CAN.G727.4 Capsicum annuum HOM05D005168 ORTHO05D006358 1.6e-29 132.9 120 55.0
Nn3g19859 Nelumbo nucifera HOM05D005168 ORTHO05D006358 2.8e-29 132.1 124 52.4
SGA_v2.0_scaffold47G17500 Striga asiatica HOM05D005168 ORTHO05D006358 2.8e-29 132.1 120 53.3
SGA_v2.0_scaffold19G08553 Striga asiatica HOM05D005168 ORTHO05D006358 4.7e-29 131.3 120 53.3
AL5G14600 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 8.0e-29 130.6 120 54.2
AT3G25940 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 1.0e-28 130.2 120 54.2
Nitab4.5_0003251g0060 Nicotiana tabacum HOM05D005168 ORTHO05D006358 1.0e-28 130.2 120 53.3
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 1.4e-28 129.8 117 54.7
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 2.3e-28 129.0 118 54.2
Nitab4.5_0000337g0010 Nicotiana tabacum HOM05D005168 ORTHO05D006358 2.3e-28 129.0 120 53.3
Gohir.A06G002600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 3.0e-28 128.6 120 56.7
Gohir.D06G005600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 3.0e-28 128.6 120 56.7
Gorai.010G002800 Gossypium raimondii HOM05D005168 ORTHO05D006358 3.0e-28 128.6 120 56.7
Os03g0711700 Oryza sativa ssp. japonica HOM05D005168 ORTHO05D006358 4.0e-28 128.3 125 51.2
Eucgr.F02832 Eucalyptus grandis HOM05D005168 ORTHO05D006358 5.2e-28 127.9 78 76.9
TAR622G0958 Trochodendron aralioides HOM05D005168 ORTHO05D006358 5.2e-28 127.9 124 50.0
DCAR_015742 Daucus carota HOM05D005168 ORTHO05D006358 6.8e-28 127.5 120 51.7
MSTRG.22344 Avicennia marina HOM05D005168 ORTHO05D006358 8.9e-28 127.1 117 53.0
Solyc04g054510.4 Solanum lycopersicum HOM05D005168 ORTHO05D006358 1.2e-27 126.7 120 52.5
PGSC0003DMG400022038 Solanum tuberosum HOM05D005168 ORTHO05D006358 1.2e-27 126.7 120 52.5
Thhalv10019327m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 1.5e-27 126.3 120 53.3
Peaxi162Scf00553g00216 Petunia axillaris HOM05D005168 ORTHO05D006358 2.6e-27 125.6 120 51.7
CARHR146930 Cardamine hirsuta HOM05D005168 ORTHO05D006358 3.4e-27 125.2 120 53.3
Thhalv10009132m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 4.4e-27 124.8 120 52.5
VMungo1080G1160 Vigna mungo HOM05D005168 ORTHO05D006358 4.4e-27 124.8 117 51.3
Cc10_g01450 Coffea canephora HOM05D005168 ORTHO05D006358 5.8e-27 124.4 116 52.6
BcaB07g32021 Brassica carinata HOM05D005168 ORTHO05D006358 7.5e-27 124.0 120 51.7
BolC5t30566H Brassica oleracea HOM05D005168 ORTHO05D006358 7.5e-27 124.0 120 51.7
CARHR020540 Cardamine hirsuta HOM05D005168 ORTHO05D006358 7.5e-27 124.0 120 53.3
BcaB03g14336 Brassica carinata HOM05D005168 ORTHO05D006358 9.8e-27 123.6 120 51.7
BcaB03g14344 Brassica carinata HOM05D005168 ORTHO05D006358 9.8e-27 123.6 120 51.7
C07p23400 Brassica napus HOM05D005168 ORTHO05D006358 9.8e-27 123.6 120 51.7
BolC7t42872H Brassica oleracea HOM05D005168 ORTHO05D006358 9.8e-27 123.6 120 51.7
Duzib093G1099 Durio zibethinus HOM05D005168 ORTHO05D006358 9.8e-27 123.6 121 53.7
FAN23G3095 Fragaria x ananassa HOM05D005168 ORTHO05D006358 9.8e-27 123.6 118 50.8
A07p16030 Brassica napus HOM05D005168 ORTHO05D006358 1.3e-26 123.2 120 51.7
BraA07t29331Z Brassica rapa HOM05D005168 ORTHO05D006358 1.3e-26 123.2 120 51.7
Cpa.g.sc58.102 Carica papaya HOM05D005168 ORTHO05D006358 1.3e-26 123.2 121 49.6
Sp1g17830 Schrenkiella parvula HOM05D005168 ORTHO05D006358 1.3e-26 123.2 120 51.7
GSVIVG01009945001 Vitis vinifera HOM05D005168 ORTHO05D006358 1.7e-26 122.9 125 48.8
BraA06t24725Z Brassica rapa HOM05D005168 ORTHO05D006358 2.2e-26 122.5 120 50.8
Carub.0005s0380 Capsella rubella HOM05D005168 ORTHO05D006358 2.2e-26 122.5 120 50.8
BcaC05g25900 Brassica carinata HOM05D005168 ORTHO05D006358 2.9e-26 122.1 120 50.8
C05p18550 Brassica napus HOM05D005168 ORTHO05D006358 2.9e-26 122.1 120 50.8
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 3.7e-26 121.7 115 51.3
CDE11G0347 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 6.4e-26 120.9 118 47.5
A06p16200 Brassica napus HOM05D005168 ORTHO05D006358 1.4e-25 119.8 120 50.8
CSS0004439 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 1.9e-25 119.4 122 49.2
Actinidia37940 Actinidia chinensis HOM05D005168 ORTHO05D006358 4.1e-25 118.2 120 50.0
Ciclev10003775m.g Citrus clementina HOM05D005168 ORTHO05D006358 4.1e-25 118.2 122 49.2
CSS0038486 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 5.4e-25 117.9 120 49.2
Migut.N03173 Erythranthe guttata HOM05D005168 ORTHO05D006358 7.0e-25 117.5 117 48.7
SalBow8G1113 Salvia bowleyana HOM05D005168 ORTHO05D006358 9.2e-25 117.1 116 48.3
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 2.0e-24 115.9 118 50.0
Lsat_1_v5_gn_2_14120 Lactuca sativa HOM05D005168 ORTHO05D006358 4.6e-24 114.8 111 51.4
vmacro04368 Vaccinium macrocarpon HOM05D005168 ORTHO05D006358 1.0e-23 113.6 114 50.9
Sc15g0004820 Simmondsia chinensis HOM05D005168 ORTHO05D006358 3.9e-23 111.7 121 47.1
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 8.6e-23 110.5 110 51.8
ECA238G1857 Erigeron canadensis HOM05D005168 ORTHO05D006358 2.5e-22 109.0 111 50.5
Sopen04g024330 Solanum pennellii HOM05D005168 ORTHO05D006358 3.3e-22 108.6 106 51.9
Rhsim07G0250400 Rhododendron simsii HOM05D005168 ORTHO05D006358 5.6e-22 107.8 116 47.4
EL10Ac1g02165 Beta vulgaris HOM05D005168 ORTHO05D006358 1.2e-21 106.7 121 46.3
Hund09202 Selenicereus undatus HOM05D005168 ORTHO05D006358 4.7e-21 104.8 121 46.3
Sabra13G0016900 Salix brachista HOM05D005168 ORTHO05D006358 1.1e-20 103.6 96 47.9
HanXRQChr04g0101211 Helianthus annuus HOM05D005168 ORTHO05D006358 1.8e-20 102.8 111 45.9
unitig_22.g6797 Utricularia gibba HOM05D005168 ORTHO05D006358 4.0e-20 101.7 117 46.2
Sabra13G0012900 Salix brachista HOM05D005168 ORTHO05D006358 5.2e-20 101.3 94 47.9
Mapoly0043s0107 Marchantia polymorpha HOM05D005168 ORTHO05D006358 2.0e-19 99.4 124 42.7
Aqoxy2G01931 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 2.6e-19 99.0 122 44.3
Dinv40488 Davidia involucrata HOM05D005168 ORTHO05D006358 4.4e-19 98.2 103 47.6
SEGI_04309 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 2.2e-18 95.9 120 41.7
AagrBONN_evm.TU.Sc2ySwM_368.3393 Anthoceros agrestis HOM05D005168 ORTHO05D006358 1.7e-15 86.3 119 36.1
Pp3c24_7070 Physcomitrium patens HOM05D005168 ORTHO05D006358 1.5e-14 83.2 154 33.8
FAN26G0870 Fragaria x ananassa HOM05D005168 ORTHO05D006358 1.9e-14 82.8 69 59.4
AL1G32870 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 5.6e-14 81.3 66 54.5
TPR.G9182 Trifolium pratense HOM05D005168 ORTHO05D006358 1.6e-13 79.7 80 50.0
AT1G20065 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 2.1e-13 79.3 62 56.5
HPP92_028162 Vanilla planifolia HOM05D005168 ORTHO05D006358 1.4e-12 76.6 82 47.6
MD15G1010600 Malus domestica HOM05D005168 ORTHO05D006358 1.8e-12 76.3 54 59.3
Cre01.g018000 Chlamydomonas reinhardtii HOM05D005168 ORTHO05D006358 5.2e-12 74.7 122 33.6
Glyma.19G179600 Glycine max HOM05D005168 ORTHO05D006358 1.2e-11 73.6 66 51.5
SMO351G0141 Selaginella moellendorffii HOM05D005168 ORTHO05D006358 4.4e-11 71.6 106 34.0
ATR0057G015 Amborella trichopoda HOM05D005168 ORTHO05D006358 5.8e-11 71.2 86 40.7
Ca_15982_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 2.9e-10 68.9 53 52.8
Aqoxy6G02286 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 4.9e-10 68.2 76 42.1
Glyma.17G201200 Glycine max HOM05D005168 ORTHO05D006358 1.9e-09 66.2 65 53.8
THA.LOC109116732 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.9e-09 66.2 53 54.7
Glyma.11G172400 Glycine max HOM05D005168 ORTHO05D006358 2.4e-09 65.9 67 50.7
Glyma.06G213500 Glycine max HOM05D005168 ORTHO05D006358 9.2e-09 63.9 65 52.3
BcaC05g25904 Brassica carinata HOM05D005168 ORTHO05D006358 3.5e-08 62.0 85 43.5
Glyma.08G301902 Glycine max HOM05D005168 ORTHO05D006358 3.5e-08 62.0 56 53.6
ClCG08G014180 Citrullus lanatus HOM05D005168 ORTHO05D006358 3.0e-07 58.9 57 45.6
Glyma.08G246200 Glycine max HOM05D005168 ORTHO05D006358 3.9e-07 58.5 53 50.9
ClCG08G014170 Citrullus lanatus HOM05D005168 ORTHO05D006358 5.1e-07 58.2 40 60.0
CBR_g23850 Chara braunii HOM05D005168 ORTHO05D006358 1.1e-06 57.0 58 43.1
Lj4A21T59 Lonicera japonica HOM05D005168 ORTHO05D006358 2.5e-06 55.8 77 41.6
arahy.Tifrunner.gnm1.ann1.BQ9Q0E Arachis hypogaea HOM05D005168 ORTHO05D006358 3.3e-06 55.5 55 41.8
CDE09G0329 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 3.3e-06 55.5 73 38.4
SGA_v2.0_scaffold22G09953 Striga asiatica HOM05D006029 ORTHO05D007439 5.6e-06 54.7 114 34.2


User provided reference genes

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