Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H00620 Eucalyptus grandis HOM05D007345 ORTHO05D009277 9.4e-136 486.9 249 100.0
PGR083G0906 Punica granatum HOM05D007345 ORTHO05D009277 9.2e-83 310.8 237 69.6
Potri.015G029700 Populus trichocarpa HOM05D007345 ORTHO05D009277 4.9e-76 288.5 243 61.3
Cfa017791 Carpinus fangiana HOM05D007345 ORTHO05D009277 8.4e-76 287.7 250 60.0
GSVIVG01029370001 Vitis vinifera HOM05D007345 ORTHO05D009277 8.4e-76 287.7 206 68.9
TAR485G0005 Trochodendron aralioides HOM05D007345 ORTHO05D009277 2.5e-72 276.2 211 63.5
Atru.chr9.353 Acer truncatum HOM05D007345 ORTHO05D009277 4.3e-72 275.4 236 60.6
TAR629G2718 Trochodendron aralioides HOM05D007345 ORTHO05D009277 5.6e-72 275.0 211 63.5
CiPaw.16G072000 Carya illinoinensis HOM05D007345 ORTHO05D009277 9.6e-72 274.2 222 61.3
CsaV3_1G005120 Cucumis sativus L. HOM05D007345 ORTHO05D009277 9.6e-72 274.2 210 62.4
Ciclev10021617m.g Citrus clementina HOM05D007345 ORTHO05D009277 2.8e-71 272.7 216 63.9
Haze_18424 Corylus avellana HOM05D007345 ORTHO05D009277 2.8e-71 272.7 235 60.9
TAR629G0192 Trochodendron aralioides HOM05D007345 ORTHO05D009277 3.6e-71 272.3 211 63.0
Ca_17167_v3 Cicer arietinum L. HOM05D007345 ORTHO05D009277 4.7e-71 271.9 233 62.2
Sed0020487 Sechium edule HOM05D007345 ORTHO05D009277 4.7e-71 271.9 214 62.6
Dinv13291 Davidia involucrata HOM05D007345 ORTHO05D009277 6.2e-71 271.6 211 63.0
arahy.Tifrunner.gnm1.ann1.X12NHK Arachis hypogaea HOM05D007345 ORTHO05D009277 2.4e-70 269.6 229 59.0
arahy.Tifrunner.gnm1.ann1.TRXD5D Arachis hypogaea HOM05D007345 ORTHO05D009277 3.1e-70 269.2 229 59.0
Cpa.g.sc111.41 Carica papaya HOM05D007345 ORTHO05D009277 9.0e-70 267.7 215 62.3
CANSAT01G1136 Cannabis sativa HOM05D007345 ORTHO05D009277 3.4e-69 265.8 211 63.0
Glyma.05G249000 Glycine max HOM05D007345 ORTHO05D009277 5.8e-69 265.0 209 64.1
Hma1.2p1_0403F.1_g145230 Hydrangea macrophylla HOM05D007345 ORTHO05D009277 1.7e-68 263.5 223 58.7
Sabra15G0024900 Salix brachista HOM05D007345 ORTHO05D009277 2.2e-68 263.1 228 59.2
Thecc.03G072800 Theobroma cacao HOM05D007345 ORTHO05D009277 3.8e-68 262.3 225 58.2
Manes.02G214200 Manihot esculenta HOM05D007345 ORTHO05D009277 4.9e-68 261.9 242 55.8
TWI60G0762 Tripterygium wilfordii HOM05D007345 ORTHO05D009277 4.9e-68 261.9 227 58.1
LjContig00484g0026271 Lotus japonicus HOM05D007345 ORTHO05D009277 6.4e-68 261.5 250 56.8
FAN18G3356 Fragaria x ananassa HOM05D007345 ORTHO05D009277 1.6e-66 256.9 223 58.7
RcHm_v2.0_Chr7g0177311 Rosa chinensis HOM05D007345 ORTHO05D009277 6.0e-66 255.0 222 59.5
Lalb_Chr09g0330151 Lupinus albus HOM05D007345 ORTHO05D009277 1.3e-65 253.8 238 57.1
Phvul.002G333600 Phaseolus vulgaris HOM05D007345 ORTHO05D009277 1.3e-65 253.8 231 56.7
CSS0049327 Camellia sinensis var. sinensis HOM05D007345 ORTHO05D009277 1.7e-65 253.4 212 60.8
PSO782G0509 Papaver somniferum HOM05D007345 ORTHO05D009277 1.7e-65 253.4 211 57.3
ClCG04G012580 Citrullus lanatus HOM05D007345 ORTHO05D009277 2.3e-65 253.1 240 55.0
Actinidia35146 Actinidia chinensis HOM05D007345 ORTHO05D009277 5.1e-65 251.9 244 55.3
FvH4_5g18270 Fragaria vesca HOM05D007345 ORTHO05D009277 6.6e-65 251.5 210 59.5
FAN08G2921 Fragaria x ananassa HOM05D007345 ORTHO05D009277 6.6e-65 251.5 218 57.3
Medtr3g015440 Medicago truncatula HOM05D007345 ORTHO05D009277 3.3e-64 249.2 232 56.0
COL.COLO4_05810 Corchorus olitorius HOM05D007345 ORTHO05D009277 7.3e-64 248.1 210 59.5
FAN04G1809 Fragaria x ananassa HOM05D007345 ORTHO05D009277 7.3e-64 248.1 209 58.4
Aqoxy3G04287 Aquilegia oxysepala HOM05D007345 ORTHO05D009277 6.2e-63 245.0 225 59.1
Migut.D02059 Erythranthe guttata HOM05D007345 ORTHO05D009277 6.2e-63 245.0 262 51.1
CDE05G0430 Ceratophyllum demersum HOM05D007345 ORTHO05D009277 8.1e-63 244.6 211 56.4
Cc00_g18760 Coffea canephora HOM05D007345 ORTHO05D009277 8.1e-63 244.6 243 52.3
Sopen03g029180 Solanum pennellii HOM05D007345 ORTHO05D009277 1.4e-62 243.8 213 57.3
AT3G17670 Arabidopsis thaliana HOM05D007345 ORTHO05D009277 2.4e-62 243.0 233 52.4
Lj5A166T75 Lonicera japonica HOM05D007345 ORTHO05D009277 2.4e-62 243.0 231 55.4
Nitab4.5_0004612g0070 Nicotiana tabacum HOM05D000066 ORTHO05D000003 2.4e-62 243.0 232 54.3
Lsat_1_v5_gn_3_108980 Lactuca sativa HOM05D007345 ORTHO05D009277 3.1e-62 242.7 215 55.8
Solyc03g098440.4 Solanum lycopersicum HOM05D007345 ORTHO05D009277 4.0e-62 242.3 213 56.3
Aa31LG8G4530 Aethionema arabicum HOM05D007345 ORTHO05D009277 5.3e-62 241.9 220 53.2
CARHR093010 Cardamine hirsuta HOM05D007345 ORTHO05D009277 6.9e-62 241.5 233 52.8
A05p32180 Brassica napus HOM05D007345 ORTHO05D009277 9.0e-62 241.1 233 52.8
BraA05t22048Z Brassica rapa HOM05D007345 ORTHO05D009277 9.0e-62 241.1 233 52.4
MD06G1238300 Malus domestica HOM05D007345 ORTHO05D009277 9.0e-62 241.1 250 52.4
Prupe.5G242200 Prunus persica HOM05D007345 ORTHO05D009277 1.5e-61 240.4 238 52.5
AL3G30780 Arabidopsis lyrata HOM05D007345 ORTHO05D009277 2.0e-61 240.0 224 52.7
CAN.G1909.2 Capsicum annuum HOM05D007345 ORTHO05D009277 2.0e-61 240.0 243 51.9
Nitab4.5_0000782g0230 Nicotiana tabacum HOM05D000001 ORTHO05D000003 2.6e-61 239.6 220 56.8
C05p48720 Brassica napus HOM05D007345 ORTHO05D009277 3.4e-61 239.2 233 51.9
BolC5t33608H Brassica oleracea HOM05D007345 ORTHO05D009277 3.4e-61 239.2 233 51.9
Rhsim12G0136700 Rhododendron simsii HOM05D007345 ORTHO05D009277 4.5e-61 238.8 223 56.1
EL10Ac8g19438 Beta vulgaris HOM05D007345 ORTHO05D009277 7.6e-61 238.0 255 49.0
HanXRQChr13g0409411 Helianthus annuus HOM05D007345 ORTHO05D009277 9.9e-61 237.7 221 53.8
Oeu061194.1 Olea europaea HOM05D007345 ORTHO05D009277 1.3e-60 237.3 217 53.5
Sp3g15810 Schrenkiella parvula HOM05D007345 ORTHO05D009277 1.3e-60 237.3 225 52.4
Carub.0003s1739 Capsella rubella HOM05D007345 ORTHO05D009277 3.8e-60 235.7 233 51.5
Peaxi162Scf00171g00331 Petunia axillaris HOM05D007345 ORTHO05D009277 3.8e-60 235.7 199 58.8
Sc10g0008500 Simmondsia chinensis HOM05D007345 ORTHO05D009277 1.1e-59 234.2 220 53.2
AUR62033076 Chenopodium quinoa HOM05D007345 ORTHO05D009277 1.2e-58 230.7 251 49.4
SalBow1G0799 Salvia bowleyana HOM05D007345 ORTHO05D009277 1.2e-58 230.7 242 48.8
unitig_0.g26 Utricularia gibba HOM05D007345 ORTHO05D009277 1.2e-58 230.7 252 48.8
BcaB06g25825 Brassica carinata HOM05D007345 ORTHO05D009277 2.7e-58 229.6 233 51.1
Thhalv10021436m.g Eutrema salsugineum HOM05D007345 ORTHO05D009277 2.7e-58 229.6 233 49.8
SGA_v2.0_scaffold164G38118 Striga asiatica HOM05D007345 ORTHO05D009277 1.8e-57 226.9 261 49.0
VMungo0251G1758 Vigna mungo HOM05D007345 ORTHO05D009277 3.7e-55 219.2 243 50.2
HPP92_025754 Vanilla planifolia HOM05D007345 ORTHO05D009277 1.8e-54 216.9 214 52.3
HPP92_025712 Vanilla planifolia HOM05D007345 ORTHO05D009277 3.1e-54 216.1 214 52.3
AUR62034041 Chenopodium quinoa HOM05D007345 ORTHO05D009277 7.6e-53 211.5 260 46.5
Nn4g24918 Nelumbo nucifera HOM05D007345 ORTHO05D009277 9.9e-53 211.1 162 61.1
Os04g0674100 Oryza sativa ssp. japonica HOM05D007345 ORTHO05D009277 7.1e-51 204.9 241 46.9
PGSC0003DMG400010180 Solanum tuberosum HOM05D007345 ORTHO05D009277 2.3e-49 199.9 336 37.8
Zm00001eb066530 Zea mays HOM05D007345 ORTHO05D009277 3.9e-49 199.1 230 47.8
ATR0618G142 Amborella trichopoda HOM05D007345 ORTHO05D009277 7.4e-48 194.9 214 49.1
DCAR_023255 Daucus carota HOM05D007345 ORTHO05D009277 8.2e-47 191.4 181 56.4
ECA240G0690 Erigeron canadensis HOM05D007345 ORTHO05D009277 1.2e-45 187.6 169 57.4
Mapoly0014s0070 Marchantia polymorpha HOM05D007345 ORTHO05D009277 3.8e-44 182.6 207 44.9
Ah.09g231730 Amaranthus hybridus HOM05D007345 ORTHO05D009277 1.4e-43 180.6 238 45.0
Eucgr.H00622 Eucalyptus grandis HOM05D007345 ORTHO05D009277 1.4e-43 180.6 99 91.9
Pp3c11_25980 Physcomitrium patens HOM05D007345 ORTHO05D009277 4.2e-43 179.1 210 42.4
PSO063G1698 Papaver somniferum HOM05D007345 ORTHO05D009277 2.7e-42 176.4 211 44.5
Psat7g000360 Pisum sativum HOM05D007345 ORTHO05D009277 2.3e-41 173.3 143 58.0
MELO3C001950.2 Cucumis melo HOM05D007345 ORTHO05D009277 1.5e-40 170.6 130 62.3
CBR_g52222 Chara braunii HOM05D007345 ORTHO05D009277 4.3e-40 169.1 218 40.4
SMO352G0035 Selaginella moellendorffii HOM05D007345 ORTHO05D009277 5.7e-40 168.7 212 43.4
vmacro16392 Vaccinium macrocarpon HOM05D007345 ORTHO05D009277 1.8e-38 163.7 421 30.9
FAN13G2172 Fragaria x ananassa HOM05D007345 ORTHO05D009277 3.8e-36 156.0 155 54.8
AagrBONN_evm.TU.Sc2ySwM_117.2683 Anthoceros agrestis HOM05D007345 ORTHO05D009277 7.2e-35 151.8 184 45.7
CAN.G1635.20 Capsicum annuum HOM05D007345 ORTHO05D009277 1.2e-34 151.0 211 42.2
Lj9C350T12 Lonicera japonica HOM05D000001 ORTHO05D009373 1.8e-33 147.1 155 50.3
SEGI_13495 Sequoiadendron giganteum HOM05D007345 ORTHO05D009277 5.3e-30 135.6 165 43.0
MSTRG.9709 Avicennia marina HOM05D007345 ORTHO05D009277 3.4e-29 132.9 139 54.7
Zm00001eb184330 Zea mays HOM05D007345 ORTHO05D009277 1.0e-28 131.3 158 44.9
Cre16.g674534 Chlamydomonas reinhardtii HOM05D007345 ORTHO05D009277 1.0e-17 94.7 226 29.2
ECA238G4657 Erigeron canadensis HOM05D006295 ORTHO05D008061 3.5e-13 79.7 141 34.0
PRCOL_00001636 Prasinoderma coloniale HOM05D007345 ORTHO05D009277 7.2e-11 72.0 54 55.6
PGR004G2173 Punica granatum HOM05D006451 ORTHO05D007680 9.7e-08 61.6 120 32.5
Hund22393 Selenicereus undatus HOM05D007345 ORTHO05D009277 2.8e-07 60.1 46 56.5
Potri.008G156500 Populus trichocarpa HOM05D006451 ORTHO05D007680 3.7e-07 59.7 120 30.0
BraA09t41742Z Brassica rapa HOM05D002462 ORTHO05D002893 8.2e-07 58.5 101 31.7
BolC8t52289H Brassica oleracea HOM05D002462 ORTHO05D002893 1.1e-06 58.2 101 31.7
Sabra08G0119100 Salix brachista HOM05D006451 ORTHO05D007680 1.1e-06 58.2 120 29.2
Sed0026394 Sechium edule HOM05D006451 ORTHO05D007680 1.1e-06 58.2 125 30.4
Cre03.g189950 Chlamydomonas reinhardtii HOM05D002462 ORTHO05D002893 1.4e-06 57.8 106 29.2
A09p63960 Brassica napus HOM05D002462 ORTHO05D002893 1.8e-06 57.4 101 30.7
Os12g0604800 Oryza sativa ssp. japonica HOM05D006451 ORTHO05D007680 2.4e-06 57.0 125 29.6
CBR_g6631 Chara braunii HOM05D002462 ORTHO05D002893 9.1e-06 55.1 117 28.2


User provided reference genes

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