Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H00594 Eucalyptus grandis HOM05D006175 ORTHO05D008081 3.6e-312 1074.7 532 100.0
Cfa020669 Carpinus fangiana HOM05D006175 ORTHO05D008081 2.2e-259 898.7 526 81.7
PGR083G2599 Punica granatum HOM05D006175 ORTHO05D008081 1.9e-258 895.6 532 80.5
CiPaw.15G150200 Carya illinoinensis HOM05D006175 ORTHO05D008081 4.6e-257 891.0 531 80.2
QL10p033089 Quercus lobata HOM05D006175 ORTHO05D008081 8.1e-254 880.2 560 76.6
Ciclev10019690m.g Citrus clementina HOM05D006175 ORTHO05D008081 5.3e-253 877.5 530 79.2
Potri.012G039300 Populus trichocarpa HOM05D006175 ORTHO05D008081 1.2e-252 876.3 535 77.6
GSVIVG01008158001 Vitis vinifera HOM05D006175 ORTHO05D008081 4.5e-252 874.4 529 78.6
Gohir.D05G004300 Gossypium hirsutum HOM05D006175 ORTHO05D008081 2.5e-250 868.6 529 77.3
Atru.chr3.1303 Acer truncatum HOM05D006175 ORTHO05D008081 3.2e-250 868.2 529 78.6
Cc04_g09090 Coffea canephora HOM05D006175 ORTHO05D008081 9.3e-250 866.7 530 78.1
Gohir.A05G003900 Gossypium hirsutum HOM05D006175 ORTHO05D008081 2.7e-249 865.1 529 76.9
Thecc.03G068300 Theobroma cacao HOM05D006175 ORTHO05D008081 2.3e-248 862.1 523 77.2
TWI60G0630 Tripterygium wilfordii HOM05D006175 ORTHO05D008081 1.5e-247 859.4 529 78.3
Lj2g0014656 Lotus japonicus HOM05D006175 ORTHO05D008081 1.9e-247 859.0 535 77.2
Oeu019145.1 Olea europaea HOM05D006175 ORTHO05D008081 3.3e-247 858.2 539 76.6
PGSC0003DMG400031043 Solanum tuberosum HOM05D006175 ORTHO05D008081 1.3e-246 856.3 530 76.8
arahy.Tifrunner.gnm1.ann1.R57YID Arachis hypogaea HOM05D006175 ORTHO05D008081 2.8e-246 855.1 536 77.2
Phvul.004G144700 Phaseolus vulgaris HOM05D006175 ORTHO05D008081 1.1e-245 853.2 531 77.8
MELO3C001937.2 Cucumis melo HOM05D006175 ORTHO05D008081 5.3e-245 850.9 526 76.4
Duzib168G0906 Durio zibethinus HOM05D006175 ORTHO05D008081 5.3e-245 850.9 558 72.9
Solyc03g098250.4 Solanum lycopersicum HOM05D006175 ORTHO05D008081 9.0e-245 850.1 530 76.2
Gorai.009G004100 Gossypium raimondii HOM05D006175 ORTHO05D008081 2.0e-244 849.0 534 75.8
arahy.Tifrunner.gnm1.ann1.SV5NHS Arachis hypogaea HOM05D006175 ORTHO05D008081 2.2e-243 845.5 545 75.8
VMungo0464G1920 Vigna mungo HOM05D006175 ORTHO05D008081 2.9e-243 845.1 537 76.2
Glyma.16G218700 Glycine max HOM05D006175 ORTHO05D008081 3.8e-243 844.7 531 76.6
Migut.O00238 Erythranthe guttata HOM05D006175 ORTHO05D008081 4.9e-243 844.3 534 75.7
ClCG04G012690 Citrullus lanatus HOM05D006175 ORTHO05D008081 5.5e-242 840.9 531 75.7
DCAR_023267 Daucus carota HOM05D006175 ORTHO05D008081 9.3e-242 840.1 570 71.8
Sed0010232 Sechium edule HOM05D006175 ORTHO05D008081 1.2e-241 839.7 525 76.4
Sopen03g028960 Solanum pennellii HOM05D006175 ORTHO05D008081 2.1e-241 839.0 530 75.8
CANSAT01G2997 Cannabis sativa HOM05D006175 ORTHO05D008081 1.3e-240 836.3 531 74.8
CsaV3_1G032270 Cucumis sativus L. HOM05D006175 ORTHO05D008081 6.7e-240 833.9 526 75.3
CAN.G637.8 Capsicum annuum HOM05D006175 ORTHO05D008081 3.4e-236 821.6 531 74.8
Sabra12G0027800 Salix brachista HOM05D006175 ORTHO05D008081 7.7e-236 820.5 539 74.0
FvH4_5g17980 Fragaria vesca HOM05D006175 ORTHO05D008081 1.2e-233 813.1 526 75.5
RcHm_v2.0_Chr7g0177621 Rosa chinensis HOM05D006175 ORTHO05D008081 2.3e-232 808.9 542 73.8
Zm00001eb037700 Zea mays HOM05D006175 ORTHO05D008081 8.8e-232 807.0 528 71.6
SalBow5G1258 Salvia bowleyana HOM05D006175 ORTHO05D008081 2.2e-230 802.4 542 71.4
Peaxi162Scf00171g00431 Petunia axillaris HOM05D006175 ORTHO05D008081 1.1e-229 800.0 535 73.1
Prupe.8G055400 Prunus persica HOM05D006175 ORTHO05D008081 4.1e-229 798.1 533 71.9
SGA_v2.0_scaffold90G27775 Striga asiatica HOM05D006175 ORTHO05D008081 5.3e-229 797.7 528 72.3
PSO782G5703 Papaver somniferum HOM05D006175 ORTHO05D008081 1.2e-228 796.6 526 71.1
TAR622G0246 Trochodendron aralioides HOM05D006175 ORTHO05D008081 3.4e-228 795.0 484 78.1
PSO063G7422 Papaver somniferum HOM05D006175 ORTHO05D008081 7.7e-228 793.9 526 70.7
Dinv02367 Davidia involucrata HOM05D006175 ORTHO05D008081 6.5e-227 790.8 526 73.8
SHI32102 Sapria himalayana HOM05D006175 ORTHO05D008081 5.5e-226 787.7 562 68.7
Manes.03G098800 Manihot esculenta HOM05D006175 ORTHO05D008081 1.8e-224 782.7 489 75.9
THA.LOC104810934 Tarenaya hassleriana HOM05D006175 ORTHO05D008081 5.1e-224 781.2 529 69.8
CSS0011699 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D008081 3.3e-223 778.5 548 70.1
Medtr6g075170 Medicago truncatula HOM05D006175 ORTHO05D008081 2.8e-222 775.4 532 70.3
Aqoxy2G03817 Aquilegia oxysepala HOM05D006175 ORTHO05D008081 4.8e-222 774.6 531 69.9
Thhalv10001961m.g Eutrema salsugineum HOM05D006175 ORTHO05D008081 8.2e-222 773.9 527 70.0
SpUn0288_0010 Schrenkiella parvula HOM05D006175 ORTHO05D008081 9.1e-221 770.4 527 70.0
Aa31LG1G13320 Aethionema arabicum HOM05D006175 ORTHO05D008081 1.3e-219 766.5 525 69.9
Cpa.g.sc103.12 Carica papaya HOM05D006175 ORTHO05D008081 1.7e-219 766.1 524 70.2
AT5G22110 Arabidopsis thaliana HOM05D006175 ORTHO05D008081 2.2e-219 765.8 525 70.7
Carub.0006s1975 Capsella rubella HOM05D006175 ORTHO05D008081 2.9e-219 765.4 529 70.5
Os05g0160800 Oryza sativa ssp. japonica HOM05D006175 ORTHO05D008081 2.9e-219 765.4 503 71.4
TPR.G28014 Trifolium pratense HOM05D006175 ORTHO05D008081 2.9e-219 765.4 554 68.4
AL6G33090 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 3.8e-219 765.0 525 71.0
Lsat_1_v5_gn_2_15241 Lactuca sativa HOM05D006175 ORTHO05D008081 1.1e-218 763.5 530 70.0
Sc10g0008900 Simmondsia chinensis HOM05D006175 ORTHO05D008081 1.7e-214 749.6 530 67.7
BcaC01g04929 Brassica carinata HOM05D006175 ORTHO05D008081 5.3e-213 744.6 527 68.1
C03p31990 Brassica napus HOM05D006175 ORTHO05D008081 5.3e-213 744.6 527 68.1
BcaB01g03058 Brassica carinata HOM05D006175 ORTHO05D008081 7.0e-213 744.2 527 68.7
BolC3t15542H Brassica oleracea HOM05D006175 ORTHO05D008081 9.1e-213 743.8 527 68.1
A03p26700 Brassica napus HOM05D006175 ORTHO05D008081 2.0e-212 742.7 526 67.9
Nitab4.5_0005973g0040 Nicotiana tabacum HOM05D006175 ORTHO05D008081 2.6e-212 742.3 551 68.2
SEGI_25528 Sequoiadendron giganteum HOM05D006175 ORTHO05D008081 5.9e-212 741.1 530 65.3
ECA238G0751 Erigeron canadensis HOM05D006175 ORTHO05D008081 2.9e-211 738.8 527 68.3
EL10Ac3g05085 Beta vulgaris HOM05D006175 ORTHO05D008081 1.9e-210 736.1 530 66.0
MD06G1235400 Malus domestica HOM05D006175 ORTHO05D008081 4.2e-210 734.9 532 67.5
BraA03t11882Z Brassica rapa HOM05D006175 ORTHO05D008081 6.1e-209 731.1 529 67.1
Lj5A165T85 Lonicera japonica HOM05D006175 ORTHO05D008081 2.2e-206 722.6 481 73.8
vmacro03513 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 1.2e-201 706.8 616 60.4
COL.COLO4_27108 Corchorus olitorius HOM05D006175 ORTHO05D008081 4.4e-199 698.4 508 66.7
Haze_18963 Corylus avellana HOM05D006175 ORTHO05D008081 2.5e-194 682.6 528 66.1
Nitab4.5_0001180g0190 Nicotiana tabacum HOM05D006175 ORTHO05D008081 1.2e-188 663.7 540 63.7
Ah.04g156800 Amaranthus hybridus HOM05D006175 ORTHO05D008081 4.3e-186 655.2 530 60.4
Hund09784 Selenicereus undatus HOM05D006175 ORTHO05D008081 5.6e-186 654.8 533 61.7
Pp3c16_3220 Physcomitrium patens HOM05D006175 ORTHO05D008081 6.1e-185 651.4 525 58.1
AUR62002056 Chenopodium quinoa HOM05D006175 ORTHO05D008081 2.6e-175 619.4 593 55.0
SMO089G0008 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 2.2e-174 616.3 527 56.4
vmacro01251 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 4.1e-173 612.1 633 54.0
ATR0598G269 Amborella trichopoda HOM05D006175 ORTHO05D008081 2.1e-172 609.8 539 57.3
HPP92_019162 Vanilla planifolia HOM05D006175 ORTHO05D008081 8.6e-171 604.4 528 57.6
Mapoly0003s0120 Marchantia polymorpha HOM05D006175 ORTHO05D008081 9.5e-170 600.9 523 55.3
Prupe.5G240100 Prunus persica HOM05D006175 ORTHO05D008081 1.4e-168 597.0 555 57.5
AUR62028170 Chenopodium quinoa HOM05D006175 ORTHO05D008081 1.3e-166 590.5 531 56.1
SMO200G0091 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 9.3e-157 557.8 533 52.3
Lalb_Chr22g0353691 Lupinus albus HOM05D006175 ORTHO05D008081 1.7e-147 526.9 300 79.0
AagrBONN_evm.TU.Sc2ySwM_369.495 Anthoceros agrestis HOM05D006175 ORTHO05D008081 8.7e-147 524.6 529 48.0
HanXRQChr05g0129731 Helianthus annuus HOM05D006175 ORTHO05D008081 1.3e-139 500.7 316 73.4
Rhsim06G0000100 Rhododendron simsii HOM05D006175 ORTHO05D008081 3.5e-132 476.1 300 72.7
Psat6g072600 Pisum sativum HOM05D006175 ORTHO05D008081 9.6e-130 468.0 556 48.4
HanXRQChr11g0338981 Helianthus annuus HOM05D006175 ORTHO05D008081 2.1e-129 466.8 301 73.1
MD14G1242400 Malus domestica HOM05D006175 ORTHO05D008081 2.8e-129 466.5 446 55.4
unitig_0.g1094 Utricularia gibba HOM05D006175 ORTHO05D008081 1.6e-124 450.7 561 46.5
FAN18G1603 Fragaria x ananassa HOM05D006175 ORTHO05D008081 2.8e-113 413.3 244 79.5
Glyma.09G169100 Glycine max HOM05D006175 ORTHO05D008081 1.0e-102 378.3 302 62.9
MCO14G014 Micromonas commoda HOM05D006175 ORTHO05D008081 4.4e-98 362.8 623 32.6
AL4G26880 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 2.1e-84 317.4 370 47.6
Cre10.g424200 Chlamydomonas reinhardtii HOM05D006175 ORTHO05D008081 2.3e-83 313.9 581 34.4
Lalb_Chr22g0353701 Lupinus albus HOM05D006175 ORTHO05D008081 8.6e-78 295.4 212 69.3
PRCOL_00003367 Prasinoderma coloniale HOM05D006175 ORTHO05D008081 2.0e-74 284.3 581 34.3
HanXRQChr05g0129721 Helianthus annuus HOM05D006175 ORTHO05D008081 2.3e-67 260.8 211 63.5
FAN04G2119 Fragaria x ananassa HOM05D006175 ORTHO05D008081 2.9e-65 253.8 208 66.3
HanXRQChr11g0338971 Helianthus annuus HOM05D006175 ORTHO05D008081 1.1e-64 251.9 211 61.6
FAN13G0892 Fragaria x ananassa HOM05D006175 ORTHO05D008081 1.4e-64 251.5 208 65.9
FAN08G2730 Fragaria x ananassa HOM05D006175 ORTHO05D008081 1.9e-64 251.1 208 65.4
VMungo1215G0683 Vigna mungo HOM05D006175 ORTHO05D008081 2.5e-61 240.7 197 59.9
AUR62043421 Chenopodium quinoa HOM05D006175 ORTHO05D008081 3.2e-56 223.8 170 60.6
CDE04G1443 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 9.2e-48 195.7 103 83.5
Ca_23674_v3 Cicer arietinum L. HOM05D006175 ORTHO05D008081 9.9e-42 175.6 184 52.2
Thecc.10G092900 Theobroma cacao HOM05D006175 ORTHO05D008952 3.6e-36 157.1 130 60.0
CDE04G2185 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 1.1e-32 145.6 85 72.9
CDE04G3312 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 1.0e-30 139.0 328 30.8
CDE04G3394 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 4.0e-19 100.5 109 54.1
Thecc.04G242900 Theobroma cacao HOM05D006175 ORTHO05D008081 1.0e-14 85.9 47 80.9
CSS0024377 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D043346 1.8e-14 85.1 58 74.1
Gorai.009G404500 Gossypium raimondii HOM05D006175 ORTHO05D047312 4.1e-11 73.9 56 62.5
Gohir.D04G101160 Gossypium hirsutum HOM05D006175 ORTHO05D047312 1.5e-10 72.0 56 62.5
BcaC05g28616 Brassica carinata HOM05D002760 ORTHO05D001361 1.7e-09 68.6 31 87.1
A07p06810 Brassica napus HOM05D002760 ORTHO05D003169 1.7e-09 68.6 31 87.1
BNapus_Darmor_BZH_scaffold_38p01460 Brassica napus HOM05D002760 ORTHO05D003169 1.7e-09 68.6 31 87.1
BraA03t12607Z Brassica rapa HOM05D002760 ORTHO05D003169 1.7e-09 68.6 31 87.1
C05p47240 Brassica napus HOM05D002760 ORTHO05D003169 5.0e-09 67.0 31 83.9
TPR.G28017 Trifolium pratense HOM05D006175 ORTHO05D008081 8.5e-09 66.2 117 38.5
Nn2g11046 Nelumbo nucifera HOM05D006175 ORTHO05D008081 3.2e-08 64.3 50 60.0
CAN.G93.25 Capsicum annuum HOM05D000544 ORTHO05D000137 5.1e-06 57.0 32 75.0


User provided reference genes

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