Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H00144 Eucalyptus grandis HOM05D006432 ORTHO05D008257 1.2e-158 563.1 297 100.0
GSVIVG01027851001 Vitis vinifera HOM05D006432 ORTHO05D008257 6.6e-96 354.8 274 69.3
Cfa014742 Carpinus fangiana HOM05D006432 ORTHO05D008257 1.5e-95 353.6 292 66.1
Potri.008G169100 Populus trichocarpa HOM05D006432 ORTHO05D008257 1.5e-95 353.6 292 66.8
Haze_11417 Corylus avellana HOM05D006432 ORTHO05D008257 2.5e-95 352.8 299 65.6
PGR031G2997 Punica granatum HOM05D006432 ORTHO05D008257 2.8e-94 349.4 273 71.1
Actinidia39914 Actinidia chinensis HOM05D006432 ORTHO05D008257 4.8e-94 348.6 292 65.8
QL06p019206 Quercus lobata HOM05D006432 ORTHO05D008257 4.8e-94 348.6 303 65.7
Sabra08G0128900 Salix brachista HOM05D006432 ORTHO05D008257 8.1e-94 347.8 294 65.6
Thecc.04G259000 Theobroma cacao HOM05D006432 ORTHO05D008257 8.1e-94 347.8 247 74.1
Manes.15G043100 Manihot esculenta HOM05D006432 ORTHO05D008257 1.8e-93 346.7 312 63.5
Hma1.2p1_0385F.1_g141240 Hydrangea macrophylla HOM05D006432 ORTHO05D008257 4.0e-93 345.5 242 72.3
Atru.chr4.2005 Acer truncatum HOM05D006432 ORTHO05D008257 1.2e-92 344.0 251 72.5
Rhsim02G0041500 Rhododendron simsii HOM05D006432 ORTHO05D008257 1.2e-92 344.0 196 86.7
CiPaw.01G181700 Carya illinoinensis HOM05D006432 ORTHO05D008257 2.0e-92 343.2 269 68.4
Nitab4.5_0000596g0040 Nicotiana tabacum HOM05D006432 ORTHO05D008257 2.6e-92 342.8 245 72.2
Nitab4.5_0000044g0560 Nicotiana tabacum HOM05D006432 ORTHO05D008257 3.4e-92 342.4 245 72.2
TWI73G0471 Tripterygium wilfordii HOM05D006432 ORTHO05D008257 3.4e-92 342.4 242 73.1
Sed0005439 Sechium edule HOM05D006432 ORTHO05D008257 2.9e-91 339.3 286 66.1
Hund11907 Selenicereus undatus HOM05D006432 ORTHO05D008257 3.8e-91 339.0 247 70.4
Solyc09g090330.3 Solanum lycopersicum HOM05D006432 ORTHO05D008257 6.4e-91 338.2 286 65.0
CAN.G220.38 Capsicum annuum HOM05D006432 ORTHO05D008257 8.4e-91 337.8 274 66.4
CsaV3_3G011940 Cucumis sativus L. HOM05D006432 ORTHO05D008257 8.4e-91 337.8 229 75.5
MD16G1221800 Malus domestica HOM05D006432 ORTHO05D008257 2.4e-90 336.3 309 62.5
Sc13g0005860 Simmondsia chinensis HOM05D006432 ORTHO05D008257 7.1e-90 334.7 271 67.5
Glyma.20G207100 Glycine max HOM05D006432 ORTHO05D008257 9.3e-90 334.3 220 78.2
Prupe.1G042200 Prunus persica HOM05D006432 ORTHO05D008257 9.3e-90 334.3 307 61.9
FAN17G1327 Fragaria x ananassa HOM05D006432 ORTHO05D008257 1.2e-89 334.0 310 62.6
Medtr1g075660 Medicago truncatula HOM05D006432 ORTHO05D008257 2.1e-89 333.2 234 73.1
Sopen09g033230 Solanum pennellii HOM05D006432 ORTHO05D008257 2.1e-89 333.2 300 62.0
TPR.G10084 Trifolium pratense HOM05D006432 ORTHO05D008257 2.1e-89 333.2 280 64.6
CSS0006599 Camellia sinensis var. sinensis HOM05D006432 ORTHO05D008257 3.5e-89 332.4 295 64.4
ClCG05G004210 Citrullus lanatus HOM05D006432 ORTHO05D008257 3.5e-89 332.4 262 68.3
FAN12G0128 Fragaria x ananassa HOM05D006432 ORTHO05D008257 4.6e-89 332.0 310 62.3
Actinidia11356 Actinidia chinensis HOM05D006432 ORTHO05D008257 7.9e-89 331.3 297 64.6
CDE04G3487 Ceratophyllum demersum HOM05D006432 ORTHO05D008257 7.9e-89 331.3 254 68.9
Ciclev10007095m.g Citrus clementina HOM05D006432 ORTHO05D008257 7.9e-89 331.3 300 63.3
MELO3C006407.2 Cucumis melo HOM05D006432 ORTHO05D008257 7.9e-89 331.3 271 67.9
PGSC0003DMG400017164 Solanum tuberosum HOM05D006432 ORTHO05D008257 7.9e-89 331.3 285 64.6
MSTRG.9882 Avicennia marina HOM05D006432 ORTHO05D008257 1.0e-88 330.9 251 69.7
Dinv27072 Davidia involucrata HOM05D006432 ORTHO05D008257 1.3e-88 330.5 298 62.8
Lalb_Chr06g0169201 Lupinus albus HOM05D006432 ORTHO05D008257 1.3e-88 330.5 233 72.5
FAN22G0893 Fragaria x ananassa HOM05D006432 ORTHO05D008257 1.8e-88 330.1 290 62.8
Migut.N00285 Erythranthe guttata HOM05D006432 ORTHO05D008257 3.0e-88 329.3 246 70.3
vmacro15458 Vaccinium macrocarpon HOM05D006432 ORTHO05D008257 3.9e-88 328.9 231 74.5
HanXRQChr14g0434951 Helianthus annuus HOM05D006432 ORTHO05D008257 5.1e-88 328.6 197 81.7
MBI07_g31085_MAGBIO Magnolia biondii HOM05D006432 ORTHO05D008257 6.7e-88 328.2 305 63.0
Psat6g122560 Pisum sativum HOM05D006432 ORTHO05D008257 1.1e-87 327.4 219 75.8
COL.COLO4_15916 Corchorus olitorius HOM05D006432 ORTHO05D008257 1.5e-87 327.0 249 69.9
EL10Ac3g04982 Beta vulgaris HOM05D006432 ORTHO05D008257 2.5e-87 326.2 253 68.0
Peaxi162Scf00392g00732 Petunia axillaris HOM05D006432 ORTHO05D008257 2.5e-87 326.2 244 71.3
RcHm_v2.0_Chr4g0394281 Rosa chinensis HOM05D006432 ORTHO05D008257 2.5e-87 326.2 313 60.4
VMungo0720G1276 Vigna mungo HOM05D006432 ORTHO05D008257 2.5e-87 326.2 299 63.5
Ah.13g072590 Amaranthus hybridus HOM05D006432 ORTHO05D008257 4.3e-87 325.5 242 70.7
Cc03_g05780 Coffea canephora HOM05D006432 ORTHO05D008257 7.4e-87 324.7 293 63.1
Ca_09849_v3 Cicer arietinum L. HOM05D006432 ORTHO05D008257 1.3e-86 323.9 295 61.7
Aqoxy5G00185 Aquilegia oxysepala HOM05D006432 ORTHO05D008257 2.1e-86 323.2 246 70.7
Duzib052G0458 Durio zibethinus HOM05D006432 ORTHO05D008257 8.1e-86 321.2 198 81.3
Lj3A686T58 Lonicera japonica HOM05D006432 ORTHO05D008257 1.4e-85 320.5 200 80.0
Lj5g0003574 Lotus japonicus HOM05D006432 ORTHO05D008257 1.8e-85 320.1 238 70.6
Os11g0595200 Oryza sativa ssp. japonica HOM05D006432 ORTHO05D008257 3.1e-85 319.3 221 74.2
AUR62015546 Chenopodium quinoa HOM05D006432 ORTHO05D008257 4.0e-85 318.9 193 80.8
Zm00001eb114860 Zea mays HOM05D006432 ORTHO05D008257 4.0e-85 318.9 221 74.2
THA.LOC104804760 Tarenaya hassleriana HOM05D006432 ORTHO05D008257 5.3e-85 318.5 267 63.7
AUR62002163 Chenopodium quinoa HOM05D006432 ORTHO05D008257 6.9e-85 318.2 194 79.9
Lsat_1_v5_gn_2_40021 Lactuca sativa HOM05D006432 ORTHO05D008257 2.6e-84 316.2 221 72.4
Lalb_Chr21g0312161 Lupinus albus HOM05D006432 ORTHO05D008257 2.6e-84 316.2 300 59.3
Thhalv10021276m.g Eutrema salsugineum HOM05D006432 ORTHO05D008257 7.6e-84 314.7 242 66.1
Oeu059409.1 Olea europaea HOM05D006432 ORTHO05D008257 7.6e-84 314.7 245 68.6
ATR0582G319 Amborella trichopoda HOM05D006432 ORTHO05D008257 1.3e-83 313.9 200 79.5
Nn3g19719 Nelumbo nucifera HOM05D006432 ORTHO05D008257 1.3e-83 313.9 249 68.7
Gohir.D09G229900 Gossypium hirsutum HOM05D006432 ORTHO05D008257 2.9e-83 312.8 306 57.8
CANSAT78G0744 Cannabis sativa HOM05D006432 ORTHO05D008257 3.8e-83 312.4 223 70.9
AL3G38060 Arabidopsis lyrata HOM05D006432 ORTHO05D008257 4.9e-83 312.0 254 65.0
Carub.0003s2366 Capsella rubella HOM05D006432 ORTHO05D008257 4.9e-83 312.0 251 66.1
CARHR099370 Cardamine hirsuta HOM05D006432 ORTHO05D008257 4.9e-83 312.0 246 66.7
Aa31LG8G9890 Aethionema arabicum HOM05D006432 ORTHO05D008257 6.4e-83 311.6 283 60.8
Gorai.006G252600 Gossypium raimondii HOM05D006432 ORTHO05D008257 8.4e-83 311.2 306 57.8
AT3G23400 Arabidopsis thaliana HOM05D006432 ORTHO05D008257 1.4e-82 310.5 259 64.1
PSO478G2331 Papaver somniferum HOM05D006432 ORTHO05D008257 1.9e-82 310.1 304 58.9
Gohir.A09G228800 Gossypium hirsutum HOM05D006432 ORTHO05D008257 3.2e-82 309.3 306 57.5
BolC7t41898H Brassica oleracea HOM05D006432 ORTHO05D008257 5.5e-82 308.5 242 66.1
BcaC06g35517 Brassica carinata HOM05D006432 ORTHO05D008257 9.3e-82 307.8 242 66.1
PSO017G5682 Papaver somniferum HOM05D006432 ORTHO05D008257 1.6e-81 307.0 305 58.4
A07p09040 Brassica napus HOM05D006432 ORTHO05D008257 2.7e-81 306.2 290 58.6
ECA240G3223 Erigeron canadensis HOM05D002023 ORTHO05D002049 2.7e-81 306.2 190 78.9
C07p14010 Brassica napus HOM05D006432 ORTHO05D008257 4.6e-81 305.4 242 65.7
BraA07t28698Z Brassica rapa HOM05D006432 ORTHO05D008257 7.9e-81 304.7 273 60.8
Sp3g21070 Schrenkiella parvula HOM05D006432 ORTHO05D008257 6.7e-80 301.6 301 57.8
Hma1.2p1_0385F.1_g141230 Hydrangea macrophylla HOM05D006432 ORTHO05D008257 3.3e-79 299.3 214 71.0
Glyma.10G182900 Glycine max HOM05D006432 ORTHO05D008257 3.4e-76 289.3 274 59.9
HPP92_005402 Vanilla planifolia HOM05D006432 ORTHO05D008257 3.8e-75 285.8 240 63.8
MD13G1216500 Malus domestica HOM05D006432 ORTHO05D008257 3.9e-72 275.8 298 56.0
unitig_0.g1188 Utricularia gibba HOM05D006432 ORTHO05D008257 9.4e-66 254.6 281 54.1
Nn1g02871 Nelumbo nucifera HOM05D006432 ORTHO05D008257 2.0e-63 246.9 186 68.8
Pp3c11_17240 Physcomitrium patens HOM05D006432 ORTHO05D008257 4.3e-63 245.7 255 51.4
SEGI_38471 Sequoiadendron giganteum HOM05D006432 ORTHO05D008257 1.8e-61 240.4 193 59.6
SMO141G0176 Selaginella moellendorffii HOM05D006432 ORTHO05D008257 7.7e-60 235.0 192 58.9
AagrBONN_evm.TU.Sc2ySwM_228.2035 Anthoceros agrestis HOM05D006432 ORTHO05D008257 1.2e-57 227.6 199 56.3
BcaB05g22938 Brassica carinata HOM05D006432 ORTHO05D008257 2.3e-56 223.4 209 56.9
Oeu055241.1 Olea europaea HOM05D000508 ORTHO05D000371 1.7e-54 217.2 239 54.4
arahy.Tifrunner.gnm1.ann1.508QQU Arachis hypogaea HOM05D006432 ORTHO05D008257 8.0e-49 198.4 114 81.6
arahy.Tifrunner.gnm1.ann1.X8C4EZ Arachis hypogaea HOM05D006432 ORTHO05D008257 1.0e-48 198.0 114 80.7
Cpa.g.sc44.36 Carica papaya HOM05D006432 ORTHO05D008257 2.3e-48 196.8 110 84.5
Mapoly0012s0134 Marchantia polymorpha HOM05D006432 ORTHO05D008257 3.9e-48 196.1 193 52.3
Dinv29840 Davidia involucrata HOM05D006432 ORTHO05D008257 3.3e-47 193.0 219 55.3
SGA_v2.0_scaffold43G16214 Striga asiatica HOM05D006432 ORTHO05D008257 5.7e-47 192.2 114 80.7
CDE03G0089 Ceratophyllum demersum HOM05D006432 ORTHO05D008257 3.6e-41 172.9 114 75.4
CBR_g30839 Chara braunii HOM05D006432 ORTHO05D008257 8.0e-41 171.8 205 43.4
SGA_v2.0_scaffold370G50119 Striga asiatica HOM05D006432 ORTHO05D008257 1.2e-39 167.9 105 76.2
Cpa.g.sc44.33 Carica papaya HOM05D006432 ORTHO05D008257 2.2e-35 153.7 136 64.0
FvH4_4g04000 Fragaria vesca HOM05D003789 ORTHO05D004158 9.4e-34 148.3 190 50.5
BcaB04g17238 Brassica carinata HOM05D006432 ORTHO05D008257 4.4e-31 139.4 117 59.0
Phvul.010G070111 Phaseolus vulgaris HOM05D006432 ORTHO05D008257 1.3e-30 137.9 186 51.6
BcaB02g08931 Brassica carinata HOM05D006432 ORTHO05D008257 4.8e-30 136.0 80 75.0
BcaB01g01688 Brassica carinata HOM05D006432 ORTHO05D008257 1.6e-28 131.0 80 73.8
Nn1g02875 Nelumbo nucifera HOM05D006432 ORTHO05D008257 3.3e-26 123.2 85 76.5
Cre02.g143667 Chlamydomonas reinhardtii HOM05D006432 ORTHO05D008257 2.8e-25 120.2 263 33.5
BcaB07g33946 Brassica carinata HOM05D006432 ORTHO05D008257 3.5e-20 103.2 62 72.6
MCO05G338 Micromonas commoda HOM05D006432 ORTHO05D008257 1.0e-19 101.7 208 36.5
Os05g0304200 Oryza sativa ssp. japonica HOM05D006432 ORTHO05D008257 3.6e-17 93.2 73 65.8
Sabra10G0037800 Salix brachista HOM05D006432 ORTHO05D008257 1.6e-09 67.8 41 70.7
Cre03.g197650 Chlamydomonas reinhardtii HOM05D006432 ORTHO05D044141 8.0e-09 65.5 209 27.8
Glyma.08G146300 Glycine max HOM05D005663 ORTHO05D007258 3.1e-08 63.5 226 26.5
CiPaw.03G123800 Carya illinoinensis HOM05D005663 ORTHO05D007258 4.0e-08 63.2 192 28.1
Pp3c23_15450 Physcomitrium patens HOM05D003483 ORTHO05D004101 4.0e-08 63.2 194 28.4
PRCOL_00002195 Prasinoderma coloniale HOM05D006432 ORTHO05D008257 5.2e-08 62.8 153 33.3
CARHR203580 Cardamine hirsuta HOM05D005663 ORTHO05D007258 1.2e-07 61.6 195 24.6
ATR0684G013 Amborella trichopoda HOM05D003483 ORTHO05D004101 1.5e-07 61.2 189 28.6
arahy.Tifrunner.gnm1.ann1.MUYK2J Arachis hypogaea HOM05D003483 ORTHO05D004101 1.5e-07 61.2 189 28.6
TAR376G1167 Trochodendron aralioides HOM05D003483 ORTHO05D004101 1.5e-07 61.2 189 28.0
RcHm_v2.0_Chr2g0119121 Rosa chinensis HOM05D005663 ORTHO05D007258 2.6e-07 60.5 192 25.5
Glyma.05G188200 Glycine max HOM05D005663 ORTHO05D007258 4.4e-07 59.7 230 26.5
Gorai.002G151300 Gossypium raimondii HOM05D005663 ORTHO05D007258 5.8e-07 59.3 192 27.1
Duzib264G0763 Durio zibethinus HOM05D005663 ORTHO05D007258 7.5e-07 58.9 185 27.6
MBI03_g28296_MAGBIO Magnolia biondii HOM05D003483 ORTHO05D004101 7.5e-07 58.9 189 29.1
Cfa005534 Carpinus fangiana HOM05D003483 ORTHO05D004101 1.3e-06 58.2 189 28.0
Ca_00085_v3 Cicer arietinum L. HOM05D003483 ORTHO05D004101 1.3e-06 58.2 189 28.6
FvH4_1g23570 Fragaria vesca HOM05D005663 ORTHO05D007258 1.3e-06 58.2 219 23.7
Gorai.010G181700 Gossypium raimondii HOM05D005663 ORTHO05D007258 1.3e-06 58.2 192 26.0
Cre03.g188650 Chlamydomonas reinhardtii HOM05D003483 ORTHO05D004101 1.7e-06 57.8 194 29.9
FAN26G2344 Fragaria x ananassa HOM05D005663 ORTHO05D007258 1.7e-06 57.8 219 23.7
Gohir.A06G149400 Gossypium hirsutum HOM05D005663 ORTHO05D007258 1.7e-06 57.8 192 25.5
PSO541G2505 Papaver somniferum HOM05D005663 ORTHO05D007258 1.7e-06 57.8 185 27.0
PSO675G3544 Papaver somniferum HOM05D005663 ORTHO05D007258 1.7e-06 57.8 185 27.6
Potri.001G309300 Populus trichocarpa HOM05D005663 ORTHO05D007258 1.7e-06 57.8 189 27.5
Ciclev10026263m.g Citrus clementina HOM05D005663 ORTHO05D007258 2.2e-06 57.4 192 26.6
Glyma.15G047700 Glycine max HOM05D003483 ORTHO05D004101 2.2e-06 57.4 189 28.0
Zm00001eb054390 Zea mays HOM05D003483 ORTHO05D004101 2.2e-06 57.4 191 27.2
CDE02G1133 Ceratophyllum demersum HOM05D003483 ORTHO05D004101 2.9e-06 57.0 192 28.6
Aa31LG3G17290 Aethionema arabicum HOM05D005663 ORTHO05D007258 3.7e-06 56.6 194 23.2
Nitab4.5_0002064g0060 Nicotiana tabacum HOM05D005663 ORTHO05D007258 3.7e-06 56.6 199 27.1
Phvul.006G213100 Phaseolus vulgaris HOM05D003483 ORTHO05D004101 3.7e-06 56.6 188 28.7
QL06p051868 Quercus lobata HOM05D005663 ORTHO05D007258 3.7e-06 56.6 192 26.6
THA.LOC104818465 Tarenaya hassleriana HOM05D005663 ORTHO05D007258 3.7e-06 56.6 191 23.0
Thecc.01G121000 Theobroma cacao HOM05D005663 ORTHO05D007258 3.7e-06 56.6 184 27.7
AT5G09820 Arabidopsis thaliana HOM05D005663 ORTHO05D007258 4.9e-06 56.2 194 24.2
Ciclev10002308m.g Citrus clementina HOM05D003483 ORTHO05D004101 4.9e-06 56.2 202 28.7
SMO347G0483 Selaginella moellendorffii HOM05D003483 ORTHO05D004101 4.9e-06 56.2 192 30.2
AL6G20230 Arabidopsis lyrata HOM05D005663 ORTHO05D007258 6.4e-06 55.8 194 24.2
Manes.13G086600 Manihot esculenta HOM05D005663 ORTHO05D007258 6.4e-06 55.8 188 26.1
Medtr8g092680 Medicago truncatula HOM05D005663 ORTHO05D007258 6.4e-06 55.8 227 26.0
VMungo0540G1714 Vigna mungo HOM05D003483 ORTHO05D004101 6.4e-06 55.8 188 28.2
BraA03t09772Z Brassica rapa HOM05D005663 ORTHO05D007258 8.3e-06 55.5 191 24.1
GSVIVG01026586001 Vitis vinifera HOM05D005663 ORTHO05D007258 8.3e-06 55.5 193 27.5


User provided reference genes

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