Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H00088 Eucalyptus grandis HOM05D003177 ORTHO05D003481 1.7e-71 272.7 148 100.0
Eucgr.G00523 Eucalyptus grandis HOM05D003177 ORTHO05D003481 2.6e-69 265.4 148 97.3
Eucgr.F03427 Eucalyptus grandis HOM05D003177 ORTHO05D003481 2.9e-68 261.9 148 96.6
Prupe.4G202300 Prunus persica HOM05D003177 ORTHO05D003481 2.5e-35 152.5 129 61.2
FAN25G3665 Fragaria x ananassa HOM05D003177 ORTHO05D003481 7.3e-35 151.0 135 55.6
Cpa.g.sc97.68 Carica papaya HOM05D003177 ORTHO05D003481 9.5e-35 150.6 134 59.7
FAN10G2257 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.2e-34 150.2 133 57.1
CiPaw.11G183800 Carya illinoinensis HOM05D003177 ORTHO05D003481 2.1e-34 149.4 121 63.6
Duzib213G0670 Durio zibethinus HOM05D003177 ORTHO05D003481 2.8e-34 149.1 133 59.4
TAR629G1976 Trochodendron aralioides HOM05D003177 ORTHO05D003481 2.8e-34 149.1 129 61.2
Potri.001G417400 Populus trichocarpa HOM05D003177 ORTHO05D003481 3.6e-34 148.7 140 56.4
FvH4_7g08040 Fragaria vesca HOM05D003177 ORTHO05D003481 6.1e-34 147.9 126 58.7
MSTRG.14415 Avicennia marina HOM05D003177 ORTHO05D003481 1.8e-33 146.4 135 57.8
FAN03G0141 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.3e-33 146.0 138 57.2
FvH4_3g21820 Fragaria vesca HOM05D003177 ORTHO05D003481 4.0e-33 145.2 144 55.6
Sc19g0005940 Simmondsia chinensis HOM05D003177 ORTHO05D003481 4.0e-33 145.2 138 56.5
CANSAT11G2707 Cannabis sativa HOM05D003177 ORTHO05D003481 5.2e-33 144.8 137 55.5
COL.COLO4_09572 Corchorus olitorius HOM05D003177 ORTHO05D003481 8.9e-33 144.1 129 61.2
FAN21G3709 Fragaria x ananassa HOM05D003177 ORTHO05D003481 8.9e-33 144.1 141 55.3
MD03G1211600 Malus domestica HOM05D003177 ORTHO05D003481 8.9e-33 144.1 132 58.3
RcHm_v2.0_Chr5g0037561 Rosa chinensis HOM05D003177 ORTHO05D003481 1.5e-32 143.3 121 60.3
RcHm_v2.0_Chr4g0410111 Rosa chinensis HOM05D003177 ORTHO05D003481 2.0e-32 142.9 121 59.5
CSS0012105 Camellia sinensis var. sinensis HOM05D003177 ORTHO05D003481 3.4e-32 142.1 132 58.3
QL08p013320 Quercus lobata HOM05D003177 ORTHO05D003481 3.4e-32 142.1 139 56.8
Lj1C863T22 Lonicera japonica HOM05D003177 ORTHO05D003481 5.8e-32 141.4 118 61.9
PGR031G3084 Punica granatum HOM05D003177 ORTHO05D003481 5.8e-32 141.4 127 55.1
ECA246G0280 Erigeron canadensis HOM05D003177 ORTHO05D003481 7.5e-32 141.0 134 54.5
Solyc07g064110.3 Solanum lycopersicum HOM05D003177 ORTHO05D003481 7.5e-32 141.0 136 55.1
GSVIVG01014607001 Vitis vinifera HOM05D003177 ORTHO05D003481 9.8e-32 140.6 132 59.1
Gohir.A01G074600 Gossypium hirsutum HOM05D003177 ORTHO05D003481 1.3e-31 140.2 140 55.0
Gohir.D01G061200 Gossypium hirsutum HOM05D003177 ORTHO05D003481 1.3e-31 140.2 140 55.7
CARHR252740 Cardamine hirsuta HOM05D003177 ORTHO05D003481 1.7e-31 139.8 131 53.4
Peaxi162Scf01086g00156 Petunia axillaris HOM05D003177 ORTHO05D003481 2.9e-31 139.0 138 53.6
Sopen07g032250 Solanum pennellii HOM05D003177 ORTHO05D003481 2.9e-31 139.0 139 54.7
SGA_v2.0_scaffold9G05037 Striga asiatica HOM05D003177 ORTHO05D003481 2.9e-31 139.0 134 54.5
Thhalv10028431m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 3.7e-31 138.7 132 54.5
FAN06G1056 Fragaria x ananassa HOM05D003177 ORTHO05D003481 3.7e-31 138.7 117 59.8
Sp6g04150 Schrenkiella parvula HOM05D003177 ORTHO05D003481 3.7e-31 138.7 132 55.3
Duzib268G0600 Durio zibethinus HOM05D003177 ORTHO05D003481 4.9e-31 138.3 135 54.8
Migut.H01856 Erythranthe guttata HOM05D003177 ORTHO05D003481 4.9e-31 138.3 129 55.0
BcaC04g21326 Brassica carinata HOM05D003177 ORTHO05D003481 6.4e-31 137.9 132 54.5
Gorai.002G082600 Gossypium raimondii HOM05D003177 ORTHO05D003481 6.4e-31 137.9 140 54.3
Sed0011648 Sechium edule HOM05D003177 ORTHO05D003481 1.1e-30 137.1 142 53.5
DCAR_008676 Daucus carota HOM05D003177 ORTHO05D003481 1.4e-30 136.7 144 53.5
EL10Ac4g07970 Beta vulgaris HOM05D003177 ORTHO05D003481 1.9e-30 136.3 127 58.3
Ah.06g183030 Amaranthus hybridus HOM05D003177 ORTHO05D003481 2.4e-30 136.0 129 57.4
AL6G48280 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 2.4e-30 136.0 144 50.0
arahy.Tifrunner.gnm1.ann1.P5VPT7 Arachis hypogaea HOM05D003177 ORTHO05D003481 3.2e-30 135.6 131 53.4
Cc05_g13250 Coffea canephora HOM05D003177 ORTHO05D003481 3.2e-30 135.6 127 57.5
PGSC0003DMG400019225 Solanum tuberosum HOM05D003177 ORTHO05D003481 3.2e-30 135.6 143 52.4
Nitab4.5_0009192g0010 Nicotiana tabacum HOM05D003177 ORTHO05D003481 4.1e-30 135.2 135 54.8
AT4G04790 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 5.4e-30 134.8 130 52.3
arahy.Tifrunner.gnm1.ann1.2TAV4H Arachis hypogaea HOM05D003177 ORTHO05D003481 7.0e-30 134.4 145 51.7
Nitab4.5_0000397g0040 Nicotiana tabacum HOM05D003177 ORTHO05D003481 9.2e-30 134.0 135 54.1
arahy.Tifrunner.gnm1.ann1.LL10MS Arachis hypogaea HOM05D003177 ORTHO05D003481 2.0e-29 132.9 145 51.0
BcaB01g01838 Brassica carinata HOM05D003177 ORTHO05D003481 2.0e-29 132.9 126 54.8
Sed0011296 Sechium edule HOM05D003177 ORTHO05D003481 2.7e-29 132.5 145 52.4
Carub.0006s3271 Capsella rubella HOM05D003177 ORTHO05D003481 3.5e-29 132.1 130 54.6
AUR62015646 Chenopodium quinoa HOM05D003177 ORTHO05D003481 3.5e-29 132.1 127 55.1
C09p33110 Brassica napus HOM05D003177 ORTHO05D003481 7.8e-29 131.0 139 51.8
BolC9t56146H Brassica oleracea HOM05D003177 ORTHO05D003481 7.8e-29 131.0 139 51.8
TWI39G1173 Tripterygium wilfordii HOM05D003177 ORTHO05D003481 7.8e-29 131.0 139 51.8
Ciclev10008545m.g Citrus clementina HOM05D003177 ORTHO05D003481 1.7e-28 129.8 147 52.4
FAN11G2546 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.7e-28 129.8 129 55.0
CsaV3_UNG229000 Cucumis sativus L. HOM05D003177 ORTHO05D003481 3.0e-28 129.0 130 54.6
BcaC09g51192 Brassica carinata HOM05D003177 ORTHO05D003481 3.9e-28 128.6 134 50.0
CsaV3_3G022860 Cucumis sativus L. HOM05D003177 ORTHO05D003481 3.9e-28 128.6 135 53.3
CAN.G337.147 Capsicum annuum HOM05D003177 ORTHO05D003481 6.6e-28 127.9 121 53.7
Thhalv10024397m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 6.6e-28 127.9 140 48.6
BraA09t38176Z Brassica rapa HOM05D003177 ORTHO05D003481 8.6e-28 127.5 149 48.3
Carub.0007s1949 Capsella rubella HOM05D003177 ORTHO05D003481 1.5e-27 126.7 133 48.9
Nn1g03661 Nelumbo nucifera HOM05D003177 ORTHO05D003481 1.5e-27 126.7 133 52.6
Phvul.011G140050 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 1.5e-27 126.7 142 50.0
A09p26090 Brassica napus HOM05D003177 ORTHO05D003481 1.9e-27 126.3 133 51.9
Haze_09611 Corylus avellana HOM05D003177 ORTHO05D003481 1.9e-27 126.3 132 53.0
Manes.03G122901 Manihot esculenta HOM05D003177 ORTHO05D003481 1.9e-27 126.3 147 50.3
VMungo1127G0069 Vigna mungo HOM05D003177 ORTHO05D003481 2.5e-27 125.9 143 49.0
Cfa020414 Carpinus fangiana HOM05D003177 ORTHO05D003481 3.3e-27 125.6 137 53.3
Actinidia35317 Actinidia chinensis HOM05D003177 ORTHO05D003481 7.3e-27 124.4 148 51.4
MELO3C018128.2 Cucumis melo HOM05D003177 ORTHO05D003481 9.5e-27 124.0 119 57.1
FAN01G1176 Fragaria x ananassa HOM05D003177 ORTHO05D003481 9.5e-27 124.0 97 63.9
Eucgr.J00432 Eucalyptus grandis HOM05D003177 ORTHO05D003481 1.6e-26 123.2 68 100.0
Lsat_1_v5_gn_5_5721 Lactuca sativa HOM05D003177 ORTHO05D003481 1.6e-26 123.2 121 52.1
AL7G32020 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 2.1e-26 122.9 142 46.5
ClCG05G014770 Citrullus lanatus HOM05D003177 ORTHO05D003481 2.1e-26 122.9 135 50.4
Sp7g20030 Schrenkiella parvula HOM05D003177 ORTHO05D003481 2.8e-26 122.5 128 50.8
BraA01t01262Z Brassica rapa HOM05D003177 ORTHO05D003481 4.7e-26 121.7 146 46.6
Glyma.06G268800 Glycine max HOM05D003177 ORTHO05D003481 4.7e-26 121.7 132 50.0
AT4G21880 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 6.2e-26 121.3 142 45.1
TPR.G25924 Trifolium pratense HOM05D003177 ORTHO05D003481 6.2e-26 121.3 130 49.2
A01p13180 Brassica napus HOM05D003177 ORTHO05D003481 1.1e-25 120.6 134 49.3
Lalb_Chr19g0134751 Lupinus albus HOM05D003177 ORTHO05D003481 1.4e-25 120.2 148 49.3
Psat7g161600 Pisum sativum HOM05D003177 ORTHO05D003481 2.3e-25 119.4 132 47.0
C01p15880 Brassica napus HOM05D003177 ORTHO05D003481 3.1e-25 119.0 134 48.5
CSS0025638 Camellia sinensis var. sinensis HOM05D003177 ORTHO05D003481 3.1e-25 119.0 130 52.3
Lj3g0020379 Lotus japonicus HOM05D003177 ORTHO05D003481 4.0e-25 118.6 136 49.3
Medtr4g081220 Medicago truncatula HOM05D003177 ORTHO05D003481 5.2e-25 118.2 118 53.4
BolC1t01542H Brassica oleracea HOM05D003177 ORTHO05D003481 6.8e-25 117.9 153 44.4
Ca_18849_v3 Cicer arietinum L. HOM05D000068 ORTHO05D000084 6.8e-25 117.9 112 55.4
CARHR228640 Cardamine hirsuta HOM05D003177 ORTHO05D003481 1.5e-24 116.7 147 45.6
CDE12G0546 Ceratophyllum demersum HOM05D003177 ORTHO05D003481 1.5e-24 116.7 136 48.5
Glyma.12G135500 Glycine max HOM05D003177 ORTHO05D003481 2.6e-24 115.9 128 51.6
THA.LOC104813041 Tarenaya hassleriana HOM05D003177 ORTHO05D003481 2.6e-24 115.9 133 48.1
arahy.Tifrunner.gnm1.ann1.BRX1G6 Arachis hypogaea HOM05D003177 ORTHO05D003481 3.4e-24 115.5 124 52.4
PSO541G2106 Papaver somniferum HOM05D003177 ORTHO05D003481 2.9e-23 112.5 127 47.2
PSO675G6436 Papaver somniferum HOM05D003177 ORTHO05D003481 2.4e-22 109.4 126 46.8
unitig_749.g13972 Utricularia gibba HOM05D003177 ORTHO05D003481 2.4e-22 109.4 120 45.0
Aqoxy4G02069 Aquilegia oxysepala HOM05D003177 ORTHO05D003481 5.4e-22 108.2 134 44.8
HPP92_004136 Vanilla planifolia HOM05D003177 ORTHO05D003481 5.4e-22 108.2 126 48.4
TPR.G36748 Trifolium pratense HOM05D003177 ORTHO05D003481 3.5e-21 105.5 100 51.0
Aa31LG9G9680 Aethionema arabicum HOM05D003177 ORTHO05D003481 8.6e-20 100.9 135 43.0
vmacro11767 Vaccinium macrocarpon HOM05D003177 ORTHO05D003481 7.3e-19 97.8 132 48.5
HanXRQChr05g0159201 Helianthus annuus HOM05D003177 ORTHO05D003481 6.2e-18 94.7 84 54.8
Zm00001eb231370 Zea mays HOM05D003177 ORTHO05D003481 6.8e-17 91.3 143 41.3
Oeu007628.1 Olea europaea HOM05D003177 ORTHO05D003481 8.9e-17 90.9 82 59.8
Actinidia10706 Actinidia chinensis HOM05D003177 ORTHO05D003481 2.6e-16 89.4 82 59.8
Hma1.2p1_1546F.1_g289990 Hydrangea macrophylla HOM05D003177 ORTHO05D003481 5.8e-16 88.2 82 61.0
Medtr4g133410 Medicago truncatula HOM05D003177 ORTHO05D003481 2.9e-15 85.9 98 44.9
BcaNung02254 Brassica carinata HOM05D003177 ORTHO05D003481 8.3e-15 84.3 88 48.9
Medtr7g025580 Medicago truncatula HOM05D003177 ORTHO05D003481 4.6e-13 78.6 104 44.2
Medtr5g034890 Medicago truncatula HOM05D003177 ORTHO05D003481 1.7e-12 76.6 114 40.4
Medtr7g025530 Medicago truncatula HOM05D003177 ORTHO05D003481 3.0e-12 75.9 98 44.9
DCAR_032350 Daucus carota HOM05D003177 ORTHO05D003481 5.1e-12 75.1 103 43.7
ECA240G3581 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.2e-10 70.5 133 34.6
Medtr7g025525 Medicago truncatula HOM05D003177 ORTHO05D003481 3.6e-10 68.9 70 48.6
DCAR_015959 Daucus carota HOM05D003177 ORTHO05D003481 1.5e-08 63.5 74 45.9


User provided reference genes

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