Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H00032 Eucalyptus grandis HOM05D006001 ORTHO05D006714 1.5e-186 656.0 328 100.0
Eucgr.L02666 Eucalyptus grandis HOM05D006001 ORTHO05D006714 6.5e-185 650.6 328 99.4
PGR042G0630 Punica granatum HOM05D006001 ORTHO05D006714 9.7e-56 221.5 345 45.2
Thecc.08G071800 Theobroma cacao HOM05D006001 ORTHO05D006714 3.6e-50 203.0 372 39.8
Manes.18G058066 Manihot esculenta HOM05D006001 ORTHO05D006714 2.4e-46 190.3 347 43.8
Haze_22467 Corylus avellana HOM05D006001 ORTHO05D006714 4.7e-42 176.0 367 39.5
Cfa013804 Carpinus fangiana HOM05D006001 ORTHO05D006714 5.2e-41 172.6 369 39.0
Duzib128G1071 Durio zibethinus HOM05D006001 ORTHO05D006714 6.7e-41 172.2 375 38.9
Dinv42605 Davidia involucrata HOM05D006001 ORTHO05D006714 3.3e-40 169.9 335 38.8
QL09p017955 Quercus lobata HOM05D006001 ORTHO05D006714 3.3e-40 169.9 347 39.2
Potri.002G111500 Populus trichocarpa HOM05D006001 ORTHO05D006714 4.4e-40 169.5 345 39.7
Potri.005G153300 Populus trichocarpa HOM05D006001 ORTHO05D006714 9.7e-40 168.3 337 41.2
COL.COLO4_35255 Corchorus olitorius HOM05D006001 ORTHO05D006714 1.8e-38 164.1 347 38.3
Duzib106G1137 Durio zibethinus HOM05D006001 ORTHO05D006714 2.4e-38 163.7 369 39.0
Prupe.1G533200 Prunus persica HOM05D006001 ORTHO05D006714 3.1e-38 163.3 419 33.9
Cpa.g.c29936.2 Carica papaya HOM05D006001 ORTHO05D006714 7.0e-38 162.2 372 37.6
TWI12G0152 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 1.6e-37 161.0 298 40.3
GSVIVG01009188001 Vitis vinifera HOM05D006001 ORTHO05D006714 2.0e-37 160.6 351 37.3
Haze_22468 Corylus avellana HOM05D006001 ORTHO05D006714 7.7e-37 158.7 386 36.5
CiPaw.03G148200 Carya illinoinensis HOM05D006001 ORTHO05D006714 1.3e-36 157.9 372 36.3
Atru.chr13.1002 Acer truncatum HOM05D006001 ORTHO05D006714 1.7e-36 157.5 375 35.5
CiPaw.07G164600 Carya illinoinensis HOM05D006001 ORTHO05D006714 2.7e-34 150.2 374 36.1
Sabra02G0088000 Salix brachista HOM05D006001 ORTHO05D006714 3.0e-33 146.7 348 37.9
Peaxi162Scf00160g00103 Petunia axillaris HOM05D006001 ORTHO05D006714 4.0e-33 146.4 387 36.4
QL12p023212 Quercus lobata HOM05D006001 ORTHO05D006714 8.8e-33 145.2 350 38.0
TAR381G0479 Trochodendron aralioides HOM05D006001 ORTHO05D006714 8.8e-33 145.2 339 38.3
Cc00_g15770 Coffea canephora HOM05D006001 ORTHO05D006714 1.5e-32 144.4 347 36.9
Ciclev10001506m.g Citrus clementina HOM05D006001 ORTHO05D006714 3.4e-32 143.3 379 34.0
MD08G1199700 Malus domestica HOM05D006001 ORTHO05D006714 4.8e-31 139.4 349 33.5
Gohir.D05G322800 Gossypium hirsutum HOM05D006001 ORTHO05D006714 8.3e-31 138.7 354 36.7
Gorai.009G346500 Gossypium raimondii HOM05D006001 ORTHO05D006714 8.3e-31 138.7 353 37.1
Oeu063699.1 Olea europaea HOM05D006001 ORTHO05D006714 8.3e-31 138.7 349 39.0
MBI16_g12475_MAGBIO Magnolia biondii HOM05D006001 ORTHO05D006714 1.1e-30 138.3 352 36.4
CSS0018086 Camellia sinensis var. sinensis HOM05D006001 ORTHO05D006714 4.1e-30 136.3 407 31.9
MELO3C021835.2 Cucumis melo HOM05D006001 ORTHO05D006714 1.6e-29 134.4 353 38.0
Gohir.A05G320600 Gossypium hirsutum HOM05D006001 ORTHO05D006714 1.6e-29 134.4 352 35.8
CANSAT11G1699 Cannabis sativa HOM05D006001 ORTHO05D006714 3.5e-29 133.3 329 38.3
Sc04g0007160 Simmondsia chinensis HOM05D006001 ORTHO05D006714 3.5e-29 133.3 328 35.7
TWI56G0486 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 7.7e-29 132.1 365 35.1
PSO210G5625 Papaver somniferum HOM05D006001 ORTHO05D006714 8.5e-28 128.6 336 38.1
A01p15870 Brassica napus HOM05D002298 ORTHO05D006714 4.2e-27 126.3 336 36.3
Nitab4.5_0000354g0120 Nicotiana tabacum HOM05D006001 ORTHO05D006714 4.2e-27 126.3 365 34.5
ClCG09G016810 Citrullus lanatus HOM05D006001 ORTHO05D006714 1.2e-26 124.8 351 36.5
PSO170G4643 Papaver somniferum HOM05D006001 ORTHO05D006714 2.1e-26 124.0 327 38.2
CsaV3_2G036230 Cucumis sativus L. HOM05D006001 ORTHO05D006714 8.0e-26 122.1 336 37.2
THA.LOC104806890 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 1.4e-25 121.3 354 35.9
CAN.G1700.2 Capsicum annuum HOM05D006001 ORTHO05D006714 3.0e-25 120.2 370 33.8
BcaC09g50862 Brassica carinata HOM05D006001 ORTHO05D006714 5.2e-25 119.4 351 34.8
MELO3C008828.2 Cucumis melo HOM05D006001 ORTHO05D006714 6.8e-25 119.0 343 35.9
Glyma.02G215100 Glycine max HOM05D006001 ORTHO05D006714 6.8e-25 119.0 360 32.8
CARHR231890 Cardamine hirsuta HOM05D006001 ORTHO05D006714 2.0e-24 117.5 348 35.6
Oeu034401.1 Olea europaea HOM05D006001 ORTHO05D006714 2.0e-24 117.5 382 33.5
Carub.0007s1657 Capsella rubella HOM05D006001 ORTHO05D006714 3.4e-24 116.7 360 35.0
arahy.Tifrunner.gnm1.ann1.5459VI Arachis hypogaea HOM05D006001 ORTHO05D006714 5.7e-24 115.9 331 35.0
BolC1t01909H Brassica oleracea HOM05D002298 ORTHO05D006714 2.2e-23 114.0 342 35.1
Nn6g34170 Nelumbo nucifera HOM05D006001 ORTHO05D006714 2.2e-23 114.0 345 33.6
AT4G24500 Arabidopsis thaliana HOM05D006001 ORTHO05D006714 8.3e-23 112.1 355 34.6
BraA01t01521Z Brassica rapa HOM05D002298 ORTHO05D006714 8.3e-23 112.1 346 35.3
SGA_v2.0_scaffold24G10238 Striga asiatica HOM05D006001 ORTHO05D006714 8.3e-23 112.1 329 34.0
Hund26817 Selenicereus undatus HOM05D006001 ORTHO05D006714 3.1e-22 110.2 361 33.2
SGA_v2.0_scaffold20G09128 Striga asiatica HOM05D006001 ORTHO05D006714 3.1e-22 110.2 331 33.8
Actinidia19626 Actinidia chinensis HOM05D006001 ORTHO05D006714 5.4e-22 109.4 402 30.6
LjContig00408g0013719 Lotus japonicus HOM05D006001 ORTHO05D006714 5.4e-22 109.4 347 30.5
C01p19810 Brassica napus HOM05D002298 ORTHO05D006714 2.7e-21 107.1 342 34.2
Psat2g065160 Pisum sativum HOM05D006001 ORTHO05D006714 4.5e-21 106.3 359 33.1
Aqoxy5G01371 Aquilegia oxysepala HOM05D006001 ORTHO05D006714 7.8e-21 105.5 423 28.4
RcHm_v2.0_Chr7g0235791 Rosa chinensis HOM05D006001 ORTHO05D006714 7.8e-21 105.5 438 29.5
arahy.Tifrunner.gnm1.ann1.X0SJ4P Arachis hypogaea HOM05D006001 ORTHO05D006714 1.0e-20 105.1 362 32.6
Thhalv10025760m.g Eutrema salsugineum HOM05D006001 ORTHO05D006714 1.0e-20 105.1 345 33.9
AL7G28720 Arabidopsis lyrata HOM05D006001 ORTHO05D006714 1.3e-20 104.8 342 33.3
PGSC0003DMG400002050 Solanum tuberosum HOM05D006001 ORTHO05D006714 3.8e-20 103.2 390 30.0
TAR376G0788 Trochodendron aralioides HOM05D006001 ORTHO05D006714 3.8e-20 103.2 225 37.8
Sp7g22490 Schrenkiella parvula HOM05D006001 ORTHO05D006714 5.0e-20 102.8 347 34.9
DCAR_023481 Daucus carota HOM05D006001 ORTHO05D006714 1.5e-19 101.3 444 28.6
A03p55330 Brassica napus HOM05D006001 ORTHO05D006714 1.9e-19 100.9 348 34.8
Migut.C00706 Erythranthe guttata HOM05D006001 ORTHO05D006714 2.5e-19 100.5 351 32.2
Aa31LG4G9600 Aethionema arabicum HOM05D006001 ORTHO05D006714 3.3e-19 100.1 371 32.6
Lj4A738G22 Lonicera japonica HOM05D006001 ORTHO05D006714 9.5e-19 98.6 420 29.8
Sopen12g030020 Solanum pennellii HOM05D006001 ORTHO05D006714 9.5e-19 98.6 389 30.1
Sopen04g030170 Solanum pennellii HOM05D006001 ORTHO05D006714 1.6e-18 97.8 330 34.8
Medtr5g066450 Medicago truncatula HOM05D006001 ORTHO05D006714 2.1e-18 97.4 341 34.6
Solyc04g076410.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 2.1e-18 97.4 328 35.4
BraA03t14592Z Brassica rapa HOM05D006001 ORTHO05D006714 4.7e-18 96.3 351 32.5
Ca_05452_v3 Cicer arietinum L. HOM05D006001 ORTHO05D006714 6.1e-18 95.9 334 33.2
PGSC0003DMG400009339 Solanum tuberosum HOM05D006001 ORTHO05D006714 2.3e-17 94.0 336 31.8
BcaC06g32880 Brassica carinata HOM05D006001 ORTHO05D006714 5.2e-17 92.8 339 32.7
HanXRQChr03g0093751 Helianthus annuus HOM05D006001 ORTHO05D006714 1.2e-16 91.7 341 29.9
BolC7t45854H Brassica oleracea HOM05D006001 ORTHO05D006714 2.6e-16 90.5 353 32.9
Lsat_1_v5_gn_3_133380 Lactuca sativa HOM05D006001 ORTHO05D006714 2.9e-15 87.0 351 31.6
unitig_578.g16728 Utricularia gibba HOM05D006001 ORTHO05D006714 3.7e-15 86.7 354 32.2
Glyma.14G182400 Glycine max HOM05D006001 ORTHO05D006714 8.3e-15 85.5 377 28.6
Rhsim07G0212300 Rhododendron simsii HOM05D006001 ORTHO05D006714 8.3e-15 85.5 398 28.1
FAN08G3160 Fragaria x ananassa HOM05D006001 ORTHO05D006714 3.2e-14 83.6 437 27.2
FAN18G3411 Fragaria x ananassa HOM05D006001 ORTHO05D006714 1.2e-13 81.6 451 26.4
Nn5g29866 Nelumbo nucifera HOM05D006001 ORTHO05D006714 4.6e-13 79.7 291 32.3
VMungo1127G1493 Vigna mungo HOM05D006001 ORTHO05D006714 1.7e-12 77.8 139 37.4
SalBow7G4402 Salvia bowleyana HOM05D006001 ORTHO05D006714 2.3e-12 77.4 391 29.4
HPP92_021096 Vanilla planifolia HOM05D006001 ORTHO05D006714 3.0e-12 77.0 340 31.8
CDE04G0496 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 5.0e-12 76.3 329 32.5
THA.LOC104799788 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 3.3e-11 73.6 288 30.9
Phvul.008G182500 Phaseolus vulgaris HOM05D006001 ORTHO05D006714 7.3e-11 72.4 406 26.4
EL10Ac1g00506 Beta vulgaris HOM05D034668 ORTHO05D006714 1.6e-10 71.2 400 28.8
Sed0021655 Sechium edule HOM05D006001 ORTHO05D006714 1.6e-10 71.2 77 54.5
Zm00001eb089620 Zea mays HOM05D034158 ORTHO05D037074 2.1e-10 70.9 326 30.7
TPR.G34712 Trifolium pratense HOM05D006001 ORTHO05D006714 3.1e-09 67.0 348 29.3
CDE06G1720 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 5.2e-09 66.2 153 39.2
Sed0021215 Sechium edule HOM05D006001 ORTHO05D006714 5.2e-09 66.2 142 44.4
SHI11237 Sapria himalayana HOM05D006001 ORTHO05D006714 6.8e-09 65.9 173 34.1
FvH4_5g34870 Fragaria vesca HOM05D006001 ORTHO05D006714 1.2e-08 65.1 448 24.8
Nitab4.5_0019796g0010 Nicotiana tabacum HOM05D006001 ORTHO05D006714 2.0e-08 64.3 264 30.3
FAN13G1830 Fragaria x ananassa HOM05D006001 ORTHO05D006714 3.4e-08 63.5 442 26.0
Solyc12g087990.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 5.8e-08 62.8 220 35.0
Lalb_Chr17g0344581 Lupinus albus HOM05D006001 ORTHO05D006714 1.3e-07 61.6 326 30.4
HanXRQChr13g0425801 Helianthus annuus HOM05D006001 ORTHO05D006714 3.7e-07 60.1 78 48.7
Lj6g0019377 Lotus japonicus HOM05D006001 ORTHO05D006714 4.9e-07 59.7 289 29.8
SEGI_15482 Sequoiadendron giganteum HOM05D006001 ORTHO05D006714 1.1e-06 58.5 188 33.5
CAN.G475.17 Capsicum annuum HOM05D006001 ORTHO05D006714 1.9e-06 57.8 72 43.1
DCAR_002596 Daucus carota HOM05D006001 ORTHO05D006714 1.9e-06 57.8 163 35.6
DCAR_000919 Daucus carota HOM05D006001 ORTHO05D006714 3.2e-06 57.0 163 35.0
Nitab4.5_0000131g0110 Nicotiana tabacum HOM05D006001 ORTHO05D006714 3.2e-06 57.0 324 26.2
Os02g0510300 Oryza sativa ssp. japonica HOM05D034158 ORTHO05D037074 4.1e-06 56.6 202 31.7
ECA240G2279 Erigeron canadensis HOM05D006001 ORTHO05D006714 5.4e-06 56.2 344 25.9
HanXRQChr13g0425671 Helianthus annuus HOM05D006001 ORTHO05D006714 5.4e-06 56.2 84 45.2


User provided reference genes

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